Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F361 I0 R1
|
1353 |
250.7 |
8230166 |
96.0% |
7900959 |
148.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
361,692 |
G→T |
41.7% |
Q18K (CAG→AAG) |
lacI ← |
DNA‑binding transcriptional repressor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 361,692 | 0 | G | T | 41.7%
| 9399.1
/ inf
| 8960 | Q18K (CAG→AAG) | lacI | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base G (2513/2707); new base T (1825/1908); total (4344/4616) |
| Fisher's exact test for biased strand distribution p-value = 4.93e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.43e-01 |
Only 100 of 9071 total aligned reads displayed.
GCAACGCCAATCAGCAACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTGTCAACGTAAATGCATGCCGCT > CP009273/361544‑361840
|
aaCGCCAATCAGCAACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCTCCACGCGGG‑AAACGGTCTGAt > 2:355582/1‑149 (MQ=255)
aaCGCCAATCAGCAACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTAt > 2:1911835/1‑149 (MQ=255)
aaCGCCAATCAGCAACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGAt < 2:2896615/149‑1 (MQ=255)
aaCGCCAATCAGCAACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGAt > 1:3618966/1‑149 (MQ=255)
cGCCAATCAGCAACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATaa < 1:65281/149‑1 (MQ=255)
gCCAATCAGCAACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTACCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAag > 1:718639/1‑149 (MQ=255)
cAATCAGCAACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAagag > 1:2949369/1‑149 (MQ=255)
aaTCAGCAACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAATCGTGGCTGGCCTGGTTCACCACGCTGG‑AAACGGTCTGATAAgaga < 2:3339695/149‑1 (MQ=255)
aTCAGCAACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCTGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGac > 1:3959680/1‑149 (MQ=255)
aTCAGCAACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGac > 2:2040562/1‑149 (MQ=255)
aTCAGCAACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCGGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGac > 1:2868415/1‑149 (MQ=255)
cAGCAACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCTCCACGCGGG‑AAACGGTCTGATAAGAGacac < 2:3919381/149‑1 (MQ=255)
aGCAACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTTGTTCACCAAGCGGG‑AAACGGTCTGATAAGAGACAcc < 2:457750/149‑1 (MQ=255)
aaCGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑CAACGGTCTGATAAGAGACACCGGc > 2:3843648/1‑149 (MQ=255)
aCGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCa > 2:3183001/1‑149 (MQ=255)
aCGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGGCTTATAAGAGACACCGGCa > 1:3891057/1‑149 (MQ=255)
cGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCTCCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCAt < 2:3486677/149‑1 (MQ=255)
gACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATa < 1:85512/149‑1 (MQ=255)
cTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTCATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATAct > 2:2809519/1‑149 (MQ=255)
cTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACCCCGGCATAct > 2:852103/1‑149 (MQ=255)
gTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCTCCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATActct < 2:3100912/149‑1 (MQ=255)
tttGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCTCCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTg < 1:4042472/149‑1 (MQ=255)
tttGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTg > 1:2284614/1‑149 (MQ=255)
tttGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCAGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTg < 2:650526/149‑1 (MQ=255)
ttGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCTCCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGc < 1:318091/149‑1 (MQ=255)
ttGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGc < 2:2732887/149‑1 (MQ=255)
cGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACAt < 1:3326316/149‑1 (MQ=255)
gCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATc > 1:1367148/1‑149 (MQ=255)
gtgCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGtt < 2:3701612/149‑1 (MQ=255)
tgCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTa < 2:160685/149‑1 (MQ=255)
aCGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTgg > 2:1418581/1‑149 (MQ=255)
gTTGGGAATGTCATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTca > 2:2185575/1‑149 (MQ=255)
gTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGTCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTca > 1:3674854/1‑149 (MQ=255)
gTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTATca > 2:2444205/1‑149 (MQ=255)
tGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCTCGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTcaca < 1:1445515/149‑1 (MQ=255)
gggAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCTCCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACAt < 1:2653305/149‑1 (MQ=255)
gggAATGTAATTCAGCTCCGCCATCGCCGCGTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑GAACGGTCGTATAAGAGACACCGGCATACTCTGCGACATCGGATAACGTTACTGGTTTCACAt > 1:1850951/1‑149 (MQ=255)
ggAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACAtt > 2:1076618/1‑149 (MQ=255)
ggAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACAtt > 1:1536305/1‑149 (MQ=255)
ggAATGTAATTCAGCTCCGCCATCGCCGCTTCCACCTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACAtt < 1:2134369/149‑1 (MQ=255)
gAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCTCCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTc > 2:1358374/1‑149 (MQ=255)
aaTGTAATTCAGCTCCGCCATCGCCGCGTGCACTTTTTCCCGCGTTTTCGCAGAAACGGGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCGGATAAGAGACACCGGCATACTCTGGGACATCGTATAACGTTACTGGTTTCACATTca > 1:3820872/1‑149 (MQ=255)
aTGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCTCCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTcac > 1:1616461/1‑149 (MQ=255)
gTAATTCAGCTCCGCCATCGCCGCGTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTcacca > 2:718538/1‑149 (MQ=255)
aaTTCAGCTCCGCCATCGCCGCTTCCTCTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCCCGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCaccacc > 2:3029728/1‑149 (MQ=255)
aTTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCTCCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCAccc < 1:122497/149‑1 (MQ=255)
aTTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑TAACGGGCTGATAAGAGACACCGGCATACTCTGCGTCCTCGTATAACGTTACTGGTTTGACATTCACCAccc > 1:3472627/1‑149 (MQ=255)
aTTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCAccc > 2:3993752/1‑149 (MQ=255)
aTTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCAccc < 1:249452/149‑1 (MQ=255)
tCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCAccccg > 2:297225/1‑147 (MQ=255)
cAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGa < 1:4108134/149‑1 (MQ=255)
cAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGa > 2:3625010/1‑149 (MQ=255)
aGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCAAACTCTGCGACCTCGTATAACGTTACTGGTTTAACAGTCACCCCCCTGaa > 2:2103033/1‑149 (MQ=255)
aGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGaa < 2:919565/149‑1 (MQ=255)
gCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAAt > 2:1214018/1‑149 (MQ=255)
gCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAAt > 2:1292690/1‑149 (MQ=255)
cGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGAc < 1:3748396/149‑1 (MQ=255)
cGCCATCGCCGCGTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGAc < 2:4089600/149‑1 (MQ=255)
gCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGAct > 2:1007472/1‑149 (MQ=255)
cATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGActct < 1:2209787/149‑1 (MQ=255)
cATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAAAGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGActct < 1:1996448/149‑1 (MQ=255)
tCGCCGCTTCCACGTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACCCGGG‑AAACGGTCTTATAAGAGACACCGGCATACACTGCGACATCGTATAACGTTAATGGTTTCACCTTAACCACCCTGAATTGAcactct > 2:22664/1‑149 (MQ=255)
ccgcTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTcc > 2:1688596/1‑149 (MQ=255)
ccgcTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTcc < 1:1298389/149‑1 (MQ=255)
gcTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCTCCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCgg > 2:1520806/1‑149 (MQ=255)
ccACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGgcgc < 1:1096365/149‑1 (MQ=255)
ccACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGgcgc < 1:1164719/149‑1 (MQ=255)
aCTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTa < 1:1702146/149‑1 (MQ=255)
cTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCtct > 1:3250505/1‑147 (MQ=255)
tttttCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATc > 1:2782618/1‑149 (MQ=255)
ttttCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCa < 2:250093/149‑1 (MQ=255)
ttttCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCa < 2:1142971/149‑1 (MQ=255)
tCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCTCGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGc > 1:2585397/1‑149 (MQ=255)
tttCGCAGAAACGTGGCTGGCCTGGTTCACCTCGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACcgc > 2:795674/1‑149 (MQ=255)
tttCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACcgc > 1:272020/1‑149 (MQ=255)
aGATACGTGGCTGGCCTGGTTCTCCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAgg < 1:2415568/149‑1 (MQ=255)
aGAAACGTGGCTGGCCTGGTTCTCCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAgg < 2:509992/149‑1 (MQ=255)
gAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGt > 1:3034163/1‑149 (MQ=255)
aaCGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGttt < 2:2361181/149‑1 (MQ=255)
aCGTGGCTGGCCTGGTTCTCCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGtttt > 2:1849634/1‑149 (MQ=255)
aCGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGtttt > 1:3406898/1‑149 (MQ=255)
aCGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGtttt > 2:3754191/1‑149 (MQ=255)
gtggcCTGGTTCTCCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCa < 2:3263962/148‑1 (MQ=255)
tggcCTGGTTCTCCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCAt < 1:1769182/149‑1 (MQ=255)
tggcCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTATCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCAt < 1:1933080/149‑1 (MQ=255)
ccTGGTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCg > 2:58556/1‑149 (MQ=255)
tGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGAt < 1:566528/149‑1 (MQ=255)
ggTTCACCACGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATg < 2:1977161/149‑1 (MQ=255)
ggTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATg > 1:1001351/1‑149 (MQ=255)
ccacGCGGGAAAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTc < 1:2063622/149‑1 (MQ=255)
ccacGCGGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCa > 2:1770061/1‑149 (MQ=255)
ccacGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCa < 1:3101439/149‑1 (MQ=255)
aCGCGGG‑AAACGGTCTGATAAGAGACACCTGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAAt > 1:3543784‑M2/1‑148 (MQ=255)
cgcgGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAAtt > 2:266066‑M2/1‑147 (MQ=255)
cgcgGG‑AAACGGTCTTATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAAtt > 1:491552‑M2/1‑147 (MQ=255)
cgGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAAttaa > 1:932101‑M2/1‑145 (MQ=255)
ggg‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAAttaat > 2:2585397‑M2/1‑144 (MQ=255)
gg‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAAttaatt > 2:3410905‑M2/1‑143 (MQ=255)
aaCGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAAttaattaaa > 1:784582‑M2/1‑140 (MQ=255)
tGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAAttaattaaaggcatca < 1:2349496‑M2/149‑17 (MQ=255)
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GCAACGCCAATCAGCAACGACTGTTTGCCCGCCAGTTGTTGTGCCACGCGGTTGGGAATGTAATTCAGCTCCGCCATCGCCGCTTCCACTTTTTCCCGCGTTTTCGCAGAAACGTGGCTGGCCTGGTTCACCACGCGGG‑AAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTGTCAACGTAAATGCATGCCGCT > CP009273/361544‑361840
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
