Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F204 I0 R1	1155	255.8	8356456	95.7%	7997128	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP009273	1,214,456	T→C	35.2%	N6N (AAT→AAC)	ymgF →	inner membrane division septum protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	1,214,456	0	T	C	35.2%	235.9 / 253.1	219	N6N (AAT→AAC)	ymgF	inner membrane division septum protein
Reads supporting (aligned to +/- strand): ref base T (71/71); new base C (31/46); total (102/117)
Fisher's exact test for biased strand distribution p-value = 2.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 222 total aligned reads displayed.

AAAATTGATCAGTAAGGCCATAGTGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTAATGCCCTTGTTTGGCTGGCGATCAA  >  CP009273/1214307‑1214605

    ttGATCAGTAAGGCCATAGTGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTgg                                                                                                                                                   <  1:810098/150‑1 (MQ=255)

     tGATCAGTAAGGCCATAGTGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGa                                                                                                                                                  >  1:374651/1‑150 (MQ=255)

       aTCAGTAAGGCCATAGTGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGatt                                                                                                                                                <  1:4043350/150‑1 (MQ=255)

        tCAGTAAGGCCATAGTGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGatta                                                                                                                                               >  1:1543634/1‑150 (MQ=255)

           gTAAGGCCATAGTGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCCTTAGTAGCATGAACAATAGTAATAACCTGGATTAgtt                                                                                                                                            >  1:1165303/1‑150 (MQ=255)

           gTAAGGCCATAGTGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTAttt                                                                                                                                            <  2:1644762/150‑1 (MQ=255)

           gTAAGGCCATAGTGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTAttt                                                                                                                                            <  1:2670414/150‑1 (MQ=255)

             aaGGCCATAGTGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCa                                                                                                                                          <  2:2115410/150‑1 (MQ=255)

             aaGGCCATAGTGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCACTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGATTGAAAGTTTTGACAGGATTTCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCa                                                                                                                                          <  1:3407260/150‑1 (MQ=255)

              aGGCCATAGTGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCAc                                                                                                                                         <  1:1207206/150‑1 (MQ=255)

               ggCCATAGTGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCAct                                                                                                                                        >  1:2786353/1‑150 (MQ=255)

                  cATAGTGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCActctc                                                                                                                                     <  1:3267466/150‑1 (MQ=255)

                   aTAGTGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCActctct                                                                                                                                    <  1:3451590/150‑1 (MQ=255)

                     aGTGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCtat                                                                                                                                  >  1:865794/1‑150 (MQ=255)

                       tGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTatat                                                                                                                                >  1:1234853/1‑150 (MQ=255)

                        gCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTGATAACCTGGATTATTTCACTCTCTATATc                                                                                                                               <  1:1373653/150‑1 (MQ=255)

                         cGGTGTAATTATAGACAGCT‑ATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCat                                                                                                                             <  2:1935613/150‑1 (MQ=255)

                          tgtgtAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCat                                                                                                                             >  2:2704891/2‑150 (MQ=255)

                          ggTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCat                                                                                                                             >  1:1649202/1‑150 (MQ=255)

                             gtAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATAtt                                                                                                                          <  2:3092508/150‑1 (MQ=255)

                             gtAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATAtt                                                                                                                          <  2:3945374/150‑1 (MQ=255)

                             gtAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATAtt                                                                                                                          <  2:302943/150‑1 (MQ=255)

                                  tataGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCa                                                                                                                     <  2:225438/150‑1 (MQ=255)

                                   ataGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCAt                                                                                                                    >  1:2374870/1‑150 (MQ=255)

                                    taGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCAtt                                                                                                                   >  1:1048430/1‑150 (MQ=255)

                                       aCAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCa                                                                                                                >  2:2414205/1‑150 (MQ=255)

                                         aGCTAATTAGCTCGTTGCCTCTTGTTACTATTTTTCATTATTTTGTTTGATATAATTGTTTGATAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCAtt                                                                                                              <  1:3910499/150‑1 (MQ=255)

                                          gCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCAttt                                                                                                             <  2:798218/150‑1 (MQ=255)

                                            tAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTAt                                                                                                           <  2:3739506/150‑1 (MQ=255)

                                                tAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTg                                                                                                       <  2:3295536/150‑1 (MQ=255)

                                                  gCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGAt                                                                                                     >  2:235392/1‑150 (MQ=255)

                                                   cTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATc                                                                                                    <  1:685494/150‑1 (MQ=255)

                                                    tCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCa                                                                                                   >  2:201888/1‑150 (MQ=255)

                                                     cGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTATCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCAc                                                                                                  >  2:919251/1‑150 (MQ=255)

                                                     cGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCAc                                                                                                  <  2:3889933/150‑1 (MQ=255)

                                                      gTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCAcc                                                                                                 <  2:1073266/150‑1 (MQ=255)

                                                       ttGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCAccc                                                                                                <  1:3000790/150‑1 (MQ=255)

                                                        tGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACcct                                                                                               <  2:944803/150‑1 (MQ=255)

                                                        tGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACcct                                                                                               >  2:3849400/1‑150 (MQ=255)

                                                         gCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACcctc                                                                                              <  1:591692/150‑1 (MQ=255)

                                                         gCCTCGTGTTACTATTGTTCATTATTTTGTTTGCTAGAATTGTTTGACAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACcctc                                                                                              <  1:477561/150‑1 (MQ=255)

                                                               tGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTc                                                                                        >  2:3653641/1‑150 (MQ=255)

                                                                 ttACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCAt                                                                                      <  1:4136412/150‑1 (MQ=255)

                                                                    cTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCt                                                                                   <  1:4128452/150‑1 (MQ=255)

                                                                      aTTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTATCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCATTa                                                                                 >  1:3667170/1‑150 (MQ=255)

                                                                      aTTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTa                                                                                 <  1:1203466/150‑1 (MQ=255)

                                                                      aTTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTa                                                                                 <  2:366680/150‑1 (MQ=255)

                                                                       ttGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTAt                                                                                <  2:3174764/150‑1 (MQ=255)

                                                                       ttGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTAt                                                                                <  2:3792872/150‑1 (MQ=255)

                                                                          ttCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGc                                                                             >  1:1995471/1‑150 (MQ=255)

                                                                            cATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCaa                                                                           >  2:348768/1‑150 (MQ=255)

                                                                             attattTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCaaa                                                                          >  1:2603766/1‑150 (MQ=255)

                                                                             attattTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCaaa                                                                          <  1:1336118/150‑1 (MQ=255)

                                                                               tattTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAAc                                                                        <  2:2737657/150‑1 (MQ=255)

                                                                                  tttgtttgCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCa                                                                     <  2:1183840/150‑1 (MQ=255)

                                                                                    tgtttgCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGt                                                                   >  2:3687495/1‑150 (MQ=255)

                                                                                    tgtttgCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGt                                                                   >  1:3818762/1‑150 (MQ=255)

                                                                                     gtttgCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTa                                                                  >  2:3236355/1‑150 (MQ=255)

                                                                                      tttgCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTAc                                                                 >  2:4129872/1‑150 (MQ=255)

                                                                                       ttgCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTAcc                                                                <  1:3877413/150‑1 (MQ=255)

                                                                                       ttgCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTAcc                                                                <  1:3944942/150‑1 (MQ=255)

                                                                                        tgCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCg                                                               >  2:2482521/1‑150 (MQ=255)

                                                                                        tgCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCg                                                               >  2:51262/1‑150 (MQ=255)

                                                                                         gCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCgg                                                              >  2:3247128/1‑150 (MQ=255)

                                                                                          cTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCggg                                                             >  2:4176681/1‑150 (MQ=255)

                                                                                            ataATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCt                                                           >  1:1271053/1‑150 (MQ=255)

                                                                                            ataATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCt                                                           <  2:1234566/150‑1 (MQ=255)

                                                                                               aTTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCAAGTACCGGGCTggg                                                        >  1:3224255/1‑150 (MQ=255)

                                                                                                   tttGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGaa                                                    <  1:2076917/150‑1 (MQ=255)

                                                                                                   tttGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGaa                                                    <  2:1510439/150‑1 (MQ=255)

                                                                                                   tttGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGaa                                                    <  1:230279/150‑1 (MQ=255)

                                                                                                          gTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTtg                                             <  2:1724714/150‑1 (MQ=255)

                                                                                                          gTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTtg                                             >  1:2986699/1‑150 (MQ=255)

                                                                                                            tttGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTtgtg                                           >  1:462733/1‑150 (MQ=255)

                                                                                                              tGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGAc                                         >  2:2885279/1‑150 (MQ=255)

                                                                                                               gACAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACg                                        >  1:193844/1‑150 (MQ=255)

                                                                                                                 cAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGAt                                      <  1:1826855/150‑1 (MQ=255)

                                                                                                                 cAGGATTGCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGAt                                      >  2:1042197/1‑150 (MQ=255)

                                                                                                                       tGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAAttt                                >  2:1714286/1‑150 (MQ=255)

                                                                                                                        gCCATTAGTAGCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTg                               >  1:2817817/1‑150 (MQ=255)

                                                                                                                         ccATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGc                              >  1:3581530/1‑150 (MQ=255)

                                                                                                                          cATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCt                             <  1:3618816/150‑1 (MQ=255)

                                                                                                                           aTTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCtt                            >  2:251909/1‑150 (MQ=255)

                                                                                                                            ttAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTa                           >  2:3228564/1‑150 (MQ=255)

                                                                                                                             tagtagCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTaa                          <  1:759130/150‑1 (MQ=255)

                                                                                                                             tagtagCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTaa                          >  1:1090362/1‑150 (MQ=255)

                                                                                                                                 agCATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTAATGcc                      >  1:3168977/1‑150 (MQ=255)

                                                                                                                                  gCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCAATGAATTTATTCTTATCACCCTCCTGGTCATCCGTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTTCATGTGACGATAAATTTGCTTAATTccc                     >  1:1936335/1‑150 (MQ=255)

                                                                                                                                   cATGAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTAATGCCCt                    <  2:614971/150‑1 (MQ=255)

                                                                                                                                   aaTGATCTATAGTAATAATCTTGATTATTTAACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCATCCTGGTCATCGTTATTTCAAAAACCAGTACCGGGATTGGAGTAGTTCTTGTGAGGATAAATTTGCTTAATGCCCt                    <  2:3629214/149‑1 (MQ=255)

                                                                                                                                     tGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTAATGCCCTTg                  >  1:3122541/1‑150 (MQ=255)

                                                                                                                                      gAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTAATGCCCTTGt                 >  2:2859269/1‑150 (MQ=255)

                                                                                                                                      gAACAATAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTAATGCCCTTGt                 <  1:2912776/150‑1 (MQ=255)

                                                                                                                                       aaCAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTAATGCCCTTGtt                >  2:759953/1‑150 (MQ=255)

                                                                                                                                          aaTAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTAATGCCCTTGTTtgg             <  2:2766358/150‑1 (MQ=255)

                                                                                                                                          aaTAGTAATAACCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTAATGCCCTTGTTtgg             <  1:1112828/150‑1 (MQ=255)

                                                                                                                                             aGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTAATGCCCTTGTTtggctg          >  1:2051733/1‑150 (MQ=255)

                                                                                                                                             aGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTAATGCCCTTGTTtggctg          <  1:1756099/150‑1 (MQ=255)

                                                                                                                                               taataaCCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTAATGCCCTTGTTtggctggc        >  1:3799642/1‑150 (MQ=255)

                                                                                                                                                     tCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTAATGCCCTTGTTTGGCTGGCGATCaa  >  2:1930271/1‑150 (MQ=255)

AAAATTGATCAGTAAGGCCATAGTGCGGTGTAATTATAGACAGCTAATTAGCTCGTTGCCTCTTGTTACTATTGTTCATTATTTTGTTTGCTATAATTGTTTGAAAGTTTTGACAGGATTGCCATTAGTAGCATGAACAATAGTAATAATCTGGATTATTTCACTCTCTATATCATATTTTCCATTGCATTTATGCTGATCACCCTCCTGGTCATCCTTATTGCAAAACCCAGTACCGGGCTGGGAGAAGTGCTTGTGACGATAAATTTGCTTAATGCCCTTGTTTGGCTGGCGATCAA  >  CP009273/1214307‑1214605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A