Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F204 I0 R1 1155 255.8 8356456 95.7% 7997128 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,605,105 C→T 43.0% intergenic (‑168/+59) uxaB ← / ← yneF altronate oxidoreductase, NAD‑dependent/putative membrane‑bound diguanylate cyclase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,605,1050CT43.0% 134.9 / 296.4 214intergenic (‑168/+59)uxaB/yneFaltronate oxidoreductase, NAD‑dependent/putative membrane‑bound diguanylate cyclase
Reads supporting (aligned to +/- strand):  ref base C (66/56);  new base T (55/37);  total (121/93)
Fisher's exact test for biased strand distribution p-value = 4.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01

Only 100 of 215 total aligned reads displayed.

CATACAACCTGTTTGAATTGGTACGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGACACGTATCGGCTTCGACCATC  >  CP009273/1604960‑1605254
                                                                                                                                                 |                                                                                                                                                     
 aTACAACCTGTTTGAATTGGTACGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGa                                                                                                                                                  <  2:2386902/150‑1 (MQ=255)
 aTACAACCTGTTTGAATTGGTACGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGa                                                                                                                                                  <  2:2386844/150‑1 (MQ=255)
 aTACAACCTGTTTGAATTGGTACGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGa                                                                                                                                                  >  1:206153/1‑150 (MQ=255)
   aCAACCTGTTTGAATTGGTACGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATc                                                                                                                                                <  2:3274454/150‑1 (MQ=255)
   aCAACCTGTTTGAATTGGTACGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATc                                                                                                                                                <  2:3274391/150‑1 (MQ=255)
    cAACCTGTTTGAATTGGTACGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCa                                                                                                                                               >  1:3888338/1‑150 (MQ=255)
    cAACCTGTTTGAATTGGTACGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCa                                                                                                                                               >  2:1124127/1‑150 (MQ=255)
         tGTTTGAATTGGTACGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAg                                                                                                                                          <  2:1010293/150‑1 (MQ=255)
          gTTTGAATTGGTACGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGt                                                                                                                                         >  1:441250/1‑150 (MQ=255)
           tttGAATTGGTACGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTg                                                                                                                                        >  1:2305113/1‑150 (MQ=255)
           tttGAATTGGTACGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTg                                                                                                                                        <  2:906048/150‑1 (MQ=255)
              gAATTGGTACGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTa                                                                                                                                     >  1:2565124/1‑150 (MQ=255)
              gAATTGGTACGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTa                                                                                                                                     <  2:2828101/150‑1 (MQ=255)
                  tGGTACGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAac                                                                                                                                 <  2:3178587/150‑1 (MQ=255)
                      aCGACAGGTTAGCAAACTTTAATACGACGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACAt                                                                                                                             <  1:377676/150‑1 (MQ=255)
                       cGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACAtt                                                                                                                            <  1:2965605/150‑1 (MQ=255)
                        gACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTg                                                                                                                           >  2:2689118/1‑150 (MQ=255)
                          cAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCa                                                                                                                         >  1:3713109/1‑150 (MQ=255)
                           aGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCAt                                                                                                                        >  1:1398418/1‑150 (MQ=255)
                             gTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTc                                                                                                                      >  2:1393856/1‑150 (MQ=255)
                             gTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTc                                                                                                                      >  2:848827/1‑150 (MQ=255)
                              ttAGCAAACTTTAATCCGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCa                                                                                                                     <  1:175688/150‑1 (MQ=255)
                                aGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCaaa                                                                                                                   >  1:3450466/1‑150 (MQ=255)
                                  cAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATc                                                                                                                 >  1:1980627/1‑150 (MQ=255)
                                  cAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATc                                                                                                                 <  2:2620888/150‑1 (MQ=255)
                                   aaaCTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATcg                                                                                                                <  2:3767666/150‑1 (MQ=255)
                                    aaCTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATcgc                                                                                                               >  2:2956632/1‑150 (MQ=255)
                                       tttAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATcgcgcg                                                                                                            <  1:98201/150‑1 (MQ=255)
                                         tAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTa                                                                                                          >  1:2783447/1‑150 (MQ=255)
                                           aTACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAAt                                                                                                        >  2:2901761/1‑150 (MQ=255)
                                            tACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATg                                                                                                       <  1:2471346/150‑1 (MQ=255)
                                               gCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAAt                                                                                                    <  2:1056215/150‑1 (MQ=255)
                                                ccGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATa                                                                                                   <  1:3358250/150‑1 (MQ=255)
                                                ccGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATa                                                                                                   <  1:3409015/150‑1 (MQ=255)
                                                 cGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATaa                                                                                                  <  1:3154331/150‑1 (MQ=255)
                                                  gAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATaaa                                                                                                 <  1:99334/150‑1 (MQ=255)
                                                  gAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATaaa                                                                                                 >  1:77064/1‑150 (MQ=255)
                                                  gAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATaaa                                                                                                 >  2:1456202/1‑150 (MQ=255)
                                                   aaCCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAg                                                                                                <  2:4035504/150‑1 (MQ=255)
                                                     ccccTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGAt                                                                                              >  2:4120704/1‑150 (MQ=255)
                                                      cccTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATg                                                                                             >  2:1407773/1‑150 (MQ=255)
                                                       ccTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGt                                                                                            >  2:3650964/1‑150 (MQ=255)
                                                       ccTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGt                                                                                            >  1:2778937/1‑150 (MQ=255)
                                                        cTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTc                                                                                           <  2:4139142/150‑1 (MQ=255)
                                                        cTGTTTTGATCAACTACTGATGCTTAATGATCAGTTTTATGAGAAAAGTGGGGAGCGGATCATTGTTTAATCTAGGAAAAAAGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGAGCGTAATGAATAAAGATGTc                                                                                           <  2:2059923/150‑1 (MQ=255)
                                                           ttttGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGa                                                                                        <  2:1496838/150‑1 (MQ=255)
                                                             ttGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACa                                                                                      >  2:232351/1‑150 (MQ=255)
                                                                  cAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTc                                                                                 >  1:1169592/1‑150 (MQ=255)
                                                                   aaCTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACCACTTcc                                                                                >  2:2531900/1‑150 (MQ=255)
                                                                   aaCTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTcc                                                                                >  1:3777943/1‑150 (MQ=255)
                                                                   aaCTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTcc                                                                                >  2:428330/1‑150 (MQ=255)
                                                                     cTCCAGATGATAAAGGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGTTTTAATCGAGGAAAAACGCCTTTTCCTGGAACAAAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATTAAAGACAACTTccac                                                                              >  2:1778221/1‑148 (MQ=255)
                                                                      tCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCa                                                                             <  1:2507143/150‑1 (MQ=255)
                                                                       ccTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCAc                                                                            <  2:757060/150‑1 (MQ=255)
                                                                         tgatgaTTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAATCGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCg                                                                          >  1:2073933/1‑150 (MQ=255)
                                                                          gatgatTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGt                                                                         >  1:381223/1‑150 (MQ=255)
                                                                           atgatTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTa                                                                        >  2:3594504/1‑150 (MQ=255)
                                                                             gatTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGATGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTTATGAATAAATATGTCAGACAACTTCCTCACCGTAAc                                                                      <  2:3082463/150‑1 (MQ=255)
                                                                              atTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACg                                                                     >  1:2416931/1‑150 (MQ=255)
                                                                              atTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACg                                                                     >  1:4108373/1‑150 (MQ=255)
                                                                              atTAATGAGCAGTTTTATGAGAAAAGTGTGGCGAGGATCATTGTTTAATCTAGGAAAAACTCCTTATCCTGTATCATAAAGTGTTAGAACACATTGCATTCAAATCGCGCGTAAAGAATAAAGATGTCATACAACTTCCTCACCGTAACg                                                                     >  2:2244589/1‑150 (MQ=255)
                                                                                  aTGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATa                                                                 >  1:1427829/1‑150 (MQ=255)
                                                                                  aTGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATa                                                                 >  1:1427791/1‑150 (MQ=255)
                                                                                    gAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGt                                                               >  2:2105064/1‑150 (MQ=255)
                                                                                        aGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTg                                                           <  2:645201/150‑1 (MQ=255)
                                                                                        aGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTg                                                           >  1:1618231/1‑150 (MQ=255)
                                                                                           tttATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTa                                                        <  1:2213769/150‑1 (MQ=255)
                                                                                                gagaAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGtt                                                   <  1:1388633/150‑1 (MQ=255)
                                                                                                 agaAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTg                                                  >  2:1904150/1‑150 (MQ=255)
                                                                                                 agaAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTg                                                  >  2:2988224/1‑150 (MQ=255)
                                                                                                     aaGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGcc                                              <  1:2438871/150‑1 (MQ=255)
                                                                                                        tgtgGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCAt                                           >  1:3577044/1‑150 (MQ=255)
                                                                                                               cgGATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCAAAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCAtcttactt                                    >  1:1007106/1‑150 (MQ=255)
                                                                                                                ggATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTttcttc                                   <  1:1290616/150‑1 (MQ=255)
                                                                                                                ggATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTttcttc                                   <  2:341796/150‑1 (MQ=255)
                                                                                                                 gATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCg                                  <  2:2926380/150‑1 (MQ=255)
                                                                                                                 gATCATGGTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGATGGTACGGTTGCGCCCATCTTTCTTCg                                  >  2:2545925/1‑150 (MQ=255)
                                                                                                                  aTCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGa                                 <  2:3328051/150‑1 (MQ=255)
                                                                                                                   tCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAg                                >  2:2445797/1‑150 (MQ=255)
                                                                                                                        gTTTAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATa                           <  1:265036/150‑1 (MQ=255)
                                                                                                                        gTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATa                           <  2:1982848/150‑1 (MQ=255)
                                                                                                                         tttAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATAc                          >  1:658699/1‑150 (MQ=255)
                                                                                                                         tttAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATAc                          <  1:3985752/150‑1 (MQ=255)
                                                                                                                         tttAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATAc                          <  2:1199408/150‑1 (MQ=255)
                                                                                                                           tAATCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAg                        >  1:299792/1‑150 (MQ=255)
                                                                                                                              tCGAGGAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGaca                     >  1:1042384/1‑150 (MQ=255)
                                                                                                                              tCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGaca                     >  1:1507572/1‑150 (MQ=255)
                                                                                                                                  ggAAAAACGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGACACGTa                 >  1:1909699/1‑150 (MQ=255)
                                                                                                                                    aaaaaCGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGACACGTATc               >  1:2492150/1‑150 (MQ=255)
                                                                                                                                     aaaaCGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGACACGTATCg              >  1:3303800/1‑150 (MQ=255)
                                                                                                                                     aaaaCGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACGTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGACACGTATCg              <  1:1096777/150‑1 (MQ=255)
                                                                                                                                      aaaCGCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGACACGTATCgg             >  1:3138559/1‑150 (MQ=255)
                                                                                                                                        aCGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGACACGTATCGGCt           >  1:313895/1‑150 (MQ=255)
                                                                                                                                          gCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGACACGTATCGGCTTc         <  1:2175826/150‑1 (MQ=255)
                                                                                                                                          gCCTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGACACGTATCGGCTTc         <  1:1631290/150‑1 (MQ=255)
                                                                                                                                          gCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGACACGTATCGGCTTc         <  2:348072/150‑1 (MQ=255)
                                                                                                                                          gCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGACACGTATCGGCTTc         >  2:75718/1‑150 (MQ=255)
                                                                                                                                          gCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGACACGTATCGGCTTc         >  2:75731/1‑150 (MQ=255)
                                                                                                                                           ccTTTTTCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGACACGTATCGGCTTCg        >  1:3279174/1‑150 (MQ=255)
                                                                                                                                              tttCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGACACGTATCGGCTTCGAcc     >  2:3357428/1‑150 (MQ=255)
                                                                                                                                                 |                                                                                                                                                     
CATACAACCTGTTTGAATTGGTACGACAGGTTAGCAAACTTTAATACGCCGAACCCCTGTTTTGATCAACTCCTGATGATTAATGAGCAGTTTTATGAGAAAAGTGTGGCGCGGATCATGGTTTAATCGAGGAAAAACGCCTTTTCCTGGATCATAAAGTGGTAGAACACATTGCATTCAAATCGCGCGTAATGAATAAAGATGTCAGACAACTTCCTCACCGTAACGCATAGTGCTGGTACGGTTGCGCCCATCTTTCTTCGAGCGATACAGACACGTATCGGCTTCGACCATC  >  CP009273/1604960‑1605254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A