Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F250 I1 R1
|
466 |
525.0 |
9216842 |
90.5% |
8341242 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP043523 |
1,848,351 |
A→T |
S20S (TCA→TCT) |
FTN78_chr1898 → |
Cold shock protein of CSP family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP043523 | 1,848,351 | 0 | A | T | 97.7%
| 212.7
/ ‑2.0
| 133 | S20S (TCA→TCT) | FTN78_chr1898 | Cold shock protein of CSP family |
| Reads supporting (aligned to +/- strand): ref base A (1/2); new base T (74/56); total (75/58) |
| Fisher's exact test for biased strand distribution p-value = 5.80e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
Only 100 of 155 total aligned reads displayed.
AAATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATGAGATTTACAATTTTGTCGAAAGGAAATAA‑‑ATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAAACACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACAAAAGCATA > CP043523/1848209‑1848491
|
agaTTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaaga > 2:2267170/3‑150 (MQ=11)
gaTTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagat < 2:3086872/149‑2 (MQ=11)
gaTTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagat > 2:2415529/2‑149 (MQ=11)
gaTTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagat > 1:1224109/2‑149 (MQ=11)
gaTTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagat < 2:3502652/149‑2 (MQ=11)
aTTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatg < 1:3364956/150‑3 (MQ=11)
ttttGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATGTTGTCGAAAGCAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAAAGGTTTAACGCTAATAAAGGATTTGGTCTTATAACCTCTGAAGAggg > 2:1633014/1‑150 (MQ=11)
ttGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATggtc < 2:2694156/150‑3 (MQ=11)
ttGTCATGAGTAAAATGTTTTATACATTCACTTTTCGAAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATggtc < 2:4543498/150‑3 (MQ=11)
tGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatggtca > 1:2494871/1‑144 (MQ=11)
gTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatggtcaa > 1:3821856/1‑143 (MQ=11)
gTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatggtcaa < 2:1750945/150‑8 (MQ=11)
gTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatggtcaa < 2:1746860/150‑8 (MQ=11)
gTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCtgaagatggtcaa < 2:3045762/150‑8 (MQ=11)
aTGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCAGAAGAAGGCAAAGAt > 2:3733735/1‑150 (MQ=11)
gAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGAttt > 2:4482696/1‑150 (MQ=11)
gAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGAttt > 1:2264538/1‑150 (MQ=11)
aGTAACATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACATTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTg > 2:4280462/1‑150 (MQ=2)
aGTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTg < 2:2562603/150‑1 (MQ=11)
gTAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGt > 1:1574065/1‑150 (MQ=11)
tAAAATGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAA‑‑ATATATCATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGtt < 2:4137598/150‑1 (MQ=11)
aaaaTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTc > 2:3245014/1‑150 (MQ=11)
aaaaTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTc > 1:4272953/1‑150 (MQ=11)
aaaaTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTc > 2:137802/1‑150 (MQ=11)
aaaTGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCg > 1:2666421/1‑150 (MQ=11)
tGTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACTTCTGAAGATGGTCAAGATTTGTTCGCTc < 2:3849627/150‑1 (MQ=11)
gTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATTGTCAAGATTTGTTCGCTCa < 2:4108100/150‑1 (MQ=11)
gTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCa > 2:3142922/1‑150 (MQ=11)
gTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCa > 2:3143518/1‑150 (MQ=11)
gTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCa > 2:644541/1‑150 (MQ=11)
gTTTTATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCa > 2:646039/1‑150 (MQ=11)
tttATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACt < 1:1287900/150‑1 (MQ=11)
ttATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACtt > 1:3608272/1‑150 (MQ=11)
ttATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACtt > 2:4295978/1‑150 (MQ=11)
ttATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACtt > 2:3842945/1‑150 (MQ=11)
ttATAGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGACTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACtt > 1:3596243/1‑150 (MQ=11)
tataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtc > 1:3699607/1‑150 (MQ=11)
tataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtc < 2:1782186/150‑1 (MQ=11)
tataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtc > 2:3757724/1‑150 (MQ=11)
ataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtct > 2:2568421/1‑150 (MQ=11)
ataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtct < 2:4071142/150‑1 (MQ=11)
ataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtct > 2:935224/1‑150 (MQ=11)
ataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtct < 2:3008814/150‑1 (MQ=11)
ataGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtct > 1:1630965/1‑150 (MQ=11)
taGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtctc > 1:2002837/1‑150 (MQ=11)
taGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtctc > 1:1795768/1‑150 (MQ=11)
taGATTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtctc > 1:1582742/1‑150 (MQ=11)
taGACTCACTTTTCGCAAAATAAGATTTACAATTTTGTCGAAAGGAAATAAATATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTtctc < 1:2986538/150‑1 (MQ=2)
tgAACTAA‑‑ATAT‑T‑ATAGAAAATTAAACATTAATATGGTTTAACGCAGATAAAAGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGATTTATTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAAACACTTGATGAAGGTCaaaa < 2:2219729/149‑1 (MQ=11)
aaTGGAACAGTAAAATGGTTTAAAGCAGATAAAGGATTTGGCTTTATAACTTCAGAAGAAGGAAAAGATTTGTTCGCTCACTTCTAAGAAATCAAATCTGATGGATTCAAAAAAAATAATGAAAATAAAAAAGTTGAATTTGATGTTgaa < 2:2630883/150‑1 (MQ=11)
acgctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAg < 1:4602485/143‑1 (MQ=11)
acgctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAg < 1:4602586/143‑1 (MQ=11)
acgctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAg < 2:1611462/143‑1 (MQ=11)
gctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCa < 1:685339/145‑1 (MQ=11)
gctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCa > 2:44493/6‑150 (MQ=11)
gctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCa > 2:3223076/6‑150 (MQ=11)
gctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCa > 1:3027120/6‑150 (MQ=11)
gctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCa > 1:1488145/6‑150 (MQ=11)
gctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCa > 1:4207196/6‑150 (MQ=11)
gctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCGCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCa > 1:2965246/6‑150 (MQ=11)
ctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAg < 2:3659452/146‑1 (MQ=11)
ctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAg < 1:1779661/146‑1 (MQ=11)
ctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAg < 1:1137934/146‑1 (MQ=11)
ctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAg > 2:3694693/5‑150 (MQ=11)
ctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAg > 2:372375/5‑150 (MQ=11)
ctactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAg < 1:1137935/146‑1 (MQ=11)
tactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGt > 1:519820/4‑150 (MQ=11)
tactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGt > 1:223541/4‑150 (MQ=11)
tactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGt < 1:2780538/147‑1 (MQ=11)
tactAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGt < 1:2864756/147‑1 (MQ=11)
actAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGtt > 2:4456208/3‑150 (MQ=11)
actAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGtt > 1:2934640/3‑150 (MQ=11)
actAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGtt > 2:2402706/3‑150 (MQ=11)
ctAAAGGATTTGGTTTTATTTCCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTa < 2:3076032/149‑1 (MQ=11)
ctAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTa > 2:3767783/2‑150 (MQ=11)
ctAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTa < 1:2051800/149‑1 (MQ=11)
ctAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTa > 1:1374286/2‑150 (MQ=11)
ctAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTGGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTa < 1:4179824/149‑1 (MQ=11)
tAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACGTCAAGCAGTTaa > 1:3385310/1‑150 (MQ=11)
tAAAGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTaa < 2:1604503/150‑1 (MQ=11)
aaaGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAat < 2:2532782/150‑1 (MQ=11)
aaaGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAat < 1:3201877/150‑1 (MQ=11)
aaaGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAat > 1:891168/1‑150 (MQ=11)
aaGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAata < 2:2264538/150‑1 (MQ=11)
aaGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAata < 1:4295978/150‑1 (MQ=11)
aGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAatat > 1:2875145/1‑150 (MQ=11)
aGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAatat < 2:26117/150‑1 (MQ=11)
aGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAatat < 2:25702/150‑1 (MQ=11)
aGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAatat > 1:4013613/1‑150 (MQ=11)
aGGATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAatan < 2:1501426/150‑2 (MQ=11)
gATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATca < 1:3324966/150‑1 (MQ=11)
gATTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATca < 1:1346135/150‑1 (MQ=11)
aTTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATcac < 1:1046277/150‑1 (MQ=11)
aTTTGGTTTTATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATcac < 1:2451788/150‑1 (MQ=11)
ggttttATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACaaaa < 2:2150218/147‑1 (MQ=11)
gttttATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACAAAAg < 2:2002837/148‑1 (MQ=11)
gttttATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACAAAAg < 1:1633014/148‑1 (MQ=11)
ttttATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACAAAAGc < 1:1112688/149‑1 (MQ=11)
ttattaCCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACAAAAGCAt > 1:526567/1‑150 (MQ=11)
tATTACCTCTGAAGATGGTCAAGATTTGTTCGCTCACTTCTCATCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACAAAAGCATa < 2:1280217/150‑1 (MQ=11)
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AAATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATGAGATTTACAATTTTGTCGAAAGGAAATAA‑‑ATAT‑T‑ATGGCAAATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGCAAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAAACACTTGATGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGACCTCAAGCAGTTAATATCACAAAAGCATA > CP043523/1848209‑1848491
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
