Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
26 |
102.0 |
3326124 |
78.0% |
2594376 |
98.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP002094 |
1,238,479 |
C→A |
D34E (GAC→GAA) |
LLNZ_06550 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP002094 | 1,238,479 | 0 | C | A | 93.4%
| 322.4
/ 12.9
| 91 | D34E (GAC→GAA) | LLNZ_06550 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (5/1); new base A (40/45); total (45/46) |
| Fisher's exact test for biased strand distribution p-value = 1.11e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 |
AAAATCATTAAAGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGACGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGAAAAATGGCG > CP002094/1238381‑1238573
|
aaaaTCATTAAAGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAc < 1:223614/99‑1 (MQ=255)
aaTCATTAAAGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGa > 2:98658/1‑99 (MQ=255)
aaTCATTAAAGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGa < 1:531190/99‑1 (MQ=255)
aaTCATTAAAGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGa > 2:242991/1‑99 (MQ=255)
tCATTAAAGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAgg > 2:958184/1‑99 (MQ=255)
cATTAAAGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAggc > 2:758146/1‑99 (MQ=255)
cATTAAAGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAggc > 2:1652567/1‑99 (MQ=255)
aTTAAAGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGACGAggcg > 2:801723/1‑99 (MQ=255)
aaaGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCt > 2:294556/1‑99 (MQ=255)
aaaGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCt > 2:327840/1‑99 (MQ=255)
aaGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAggcggggg > 1:899583/1‑96 (MQ=255)
aaGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTg > 2:645108/1‑99 (MQ=255)
aGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGCACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGACGAGGCGGCTGTTGa > 2:721032/1‑99 (MQ=255)
tCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGaaa < 2:959564/99‑1 (MQ=255)
cATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACa > 2:1566685/1‑99 (MQ=255)
cATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACa > 2:1496789/1‑99 (MQ=255)
atatTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGACGAGGCGGCTGTTGAAACAg > 1:606229/1‑99 (MQ=255)
tatTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCGGGTGAAACAGc > 1:273853/1‑99 (MQ=255)
ttAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCaa > 1:103585/1‑99 (MQ=255)
ttAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCaa > 2:571574/1‑99 (MQ=255)
tAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCaaa < 2:824753/99‑1 (MQ=255)
ggAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGACGAGGCGGCTGTTGAAACAGCAAATGGc < 2:1214531/99‑1 (MQ=255)
ggAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGc > 2:446773/1‑99 (MQ=255)
ggAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGc < 1:439751/99‑1 (MQ=255)
gAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCCGTTGAAACAGCAAAAgggc > 1:185038/1‑97 (MQ=255)
aaCTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGccc < 1:1223031/99‑1 (MQ=255)
aCTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGcccc > 2:1472917/1‑98 (MQ=255)
gACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGGTGGAAAAGCAAAAGGgccccca > 1:182216/1‑95 (MQ=255)
aacgtaaacgtTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAagag < 2:59159/99‑1 (MQ=255)
aacgtaaacgtTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAagag > 2:566583/1‑99 (MQ=255)
acgtaaacgtTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCCAATGGCCCACAAagagc > 2:1175152/1‑98 (MQ=255)
acgtaaacgtTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGt < 1:271891/99‑1 (MQ=255)
cgtaaacgtTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGtt < 1:549634/99‑1 (MQ=255)
cgtaaacgtTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGtt < 2:377838/99‑1 (MQ=255)
taaacgtTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGa > 2:683996/1‑99 (MQ=255)
aaacgtTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGACGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGaa > 2:185370/1‑99 (MQ=255)
acgtTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAAt < 2:534308/99‑1 (MQ=255)
cgtTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATc > 2:1014656/1‑99 (MQ=255)
ttACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGGAACAGCAAATGGCCCACAAAGAGTTGAAATCGt > 2:1310925/1‑99 (MQ=255)
ttACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGGAAAAGCAAAAAGCCCACAAAGAGGTGGAAACGt > 1:110331/1‑99 (MQ=255)
ttACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCgg > 2:911077/1‑98 (MQ=255)
ttACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATAGCCCACAAAGAGTTGAAATCgg > 2:721565/1‑98 (MQ=255)
tACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGtt < 1:758146/99‑1 (MQ=255)
tACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGtt < 1:308655/99‑1 (MQ=255)
aCTGGAAGGTACCAGACCACCTACAACCAATTAAACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTg < 1:164728/99‑1 (MQ=255)
cTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGa < 2:635023/99‑1 (MQ=255)
ggAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATg < 2:688197/99‑1 (MQ=255)
gAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGt < 1:737287/99‑1 (MQ=255)
aaGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTc > 2:376155/1‑99 (MQ=255)
cagTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCGAATGGCCCACAAAGAGTTGAAATCGTTGATGTCg < 2:1355375/97‑1 (MQ=255)
ggTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGt > 2:56511/1‑99 (MQ=255)
tACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTaa > 2:1445470/1‑99 (MQ=255)
ccAGACCACCTACAACCAATTAGACTACGTAAGGGTGACGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAAcc > 1:945961/1‑99 (MQ=255)
aGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTc < 1:1107638/99‑1 (MQ=255)
aGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTc < 1:327840/99‑1 (MQ=255)
gacgacCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAAAAAATGGCCCACAAAGAGGTGAAATCGTTGATGTCGTAACCTCa > 2:871880/1‑99 (MQ=255)
gACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGGAACAGCAAATGGCCCACAAAAAATTGAAAGCATTGATTTCGTAACCCCa > 1:276355/1‑99 (MQ=255)
gACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCa < 2:94250/99‑1 (MQ=255)
gACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCa > 2:669746/1‑99 (MQ=255)
gACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCa < 1:245946/99‑1 (MQ=255)
gACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCa < 2:318803/99‑1 (MQ=255)
gACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCa < 2:1350884/99‑1 (MQ=255)
accaccTACAACCAATTAGACTATGTAAGGGTGAAGAGGCGGCTGTTGAAAAAGAAAATGGCCCCCAAAAGGTGGAAATGGTTGATTCGGTAAcccccg > 1:11023/1‑95 (MQ=255)
accaccTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCAc < 2:938764/99‑1 (MQ=255)
accaccTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCAc > 2:1000519/1‑99 (MQ=255)
ccaccTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACg < 1:1636249/99‑1 (MQ=255)
ccaccTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACg > 2:702909/1‑99 (MQ=255)
ccaccTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACg < 1:1397117/99‑1 (MQ=255)
ccaccTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACg < 2:1508027/99‑1 (MQ=255)
caccTACAACCAATTAGACTACGTAAGGGTGAAGACGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGt < 1:790367/99‑1 (MQ=255)
accTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTg < 2:1407346/99‑1 (MQ=255)
aCAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCACATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATgg < 1:360873/99‑1 (MQ=255)
aaCCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGt < 2:1567525/99‑1 (MQ=255)
cAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGtttt < 1:1567439/99‑1 (MQ=255)
cAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGtttt < 1:1083187/99‑1 (MQ=255)
aTTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGtttttt > 2:1239123/1‑98 (MQ=255)
aTTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTta < 1:727121/99‑1 (MQ=255)
aTTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTta < 1:1277250/99‑1 (MQ=255)
aGACCACGTAAGGGTGAAGAGGCGGCTGGTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTatat < 1:841149/99‑1 (MQ=255)
gACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATAtt < 1:170244/99‑1 (MQ=255)
gACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATAtt < 1:99475/99‑1 (MQ=255)
cTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCCCAAAGAGTTGAAATCGTTGATGTCGTAACCCCACGTGATGGGGTTTTATATTgg > 1:8018/1‑99 (MQ=255)
tACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTTTATTTGa > 1:1573606/1‑99 (MQ=255)
gTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGaaaa < 2:90161/99‑1 (MQ=255)
aaGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGAAAAAt < 1:117665/99‑1 (MQ=255)
aaGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGAAAAAt < 2:845304/99‑1 (MQ=255)
gggTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGAAAAATgg < 1:1024083/99‑1 (MQ=255)
gggTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGAAAAATgg > 2:1109500/1‑99 (MQ=255)
gggTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGAAAAATgg < 2:1149247/99‑1 (MQ=255)
ggTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGAAAAATGGc < 1:840105/99‑1 (MQ=255)
ggTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGAAAAATGGc > 2:532318/1‑99 (MQ=255)
gTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGAAAAATGGCg < 2:182216/99‑1 (MQ=255)
|
AAAATCATTAAAGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGACGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGAAAAATGGCG > CP002094/1238381‑1238573
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAAAATCATTAAAGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGACGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGAAAAATGGCGAAG > CP002094/1238380‑1238576
|
GAAAATCATTAAAGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGAACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAA > SRR7892090.945737/1‑100 (MQ=60)
AAAATCATTAAAGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGACG < SRR7892090.225720/100‑1 (MQ=60)
AATCATTAAAGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAG < SRR7892090.536008/100‑1 (MQ=60)
AAAGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGggg > SRR7892090.906368/1‑97 (MQ=60)
CAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGgcggtga > SRR7892090.592675/1‑93 (MQ=60)
CATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGACGAGGCGGCTGTTGAAACAG > SRR7892090.611531/1‑100 (MQ=60)
ATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCgggtggaaaaga > SRR7892090.90943/1‑88 (MQ=60)
ATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCGGGTGAAACAGC > SRR7892090.276486/1‑100 (MQ=60)
ATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAA > SRR7892090.104515/1‑100 (MQ=60)
ATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCgggtggaacagtcaaagg > SRR7892090.746855/1‑82 (MQ=60)
GGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCC < SRR7892090.443875/100‑1 (MQ=60)
GGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCCGTTGAAACAGCAAAagggc > SRR7892090.186730/1‑95 (MQ=60)
AACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCA < SRR7892090.1230784/100‑1 (MQ=60)
TGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGgtggaaaagcaaaagggccccca > SRR7892090.183874/1‑77 (MQ=60)
ACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTtagaccggaaaaaggccaccaaaaggt > SRR7892090.33719/1‑73 (MQ=60)
ACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTT < SRR7892090.274502/100‑1 (MQ=60)
CGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTG < SRR7892090.554591/100‑1 (MQ=60)
GTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGgggttgttggtcaatgtgggtggttaattttttt > SRR7892090.964913/1‑66 (MQ=60)
AAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGgcgttggcaacacaaaaggccccccaaaagatggaa > SRR7892090.947356/1‑64 (MQ=60)
gctgtaataggaggcacccccccccccaaaacaaattagccgACGTAAGGGTGACGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATC < SRR7892090.369415/58‑1 (MQ=60)
ACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGGTGTTGgtaaaaaaaaaagaccccacaaaaatgagaaa > SRR7892090.1445294/1‑68 (MQ=60)
CGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGACGAGGCGGCTGTTGAAAacaccaatgggcccccaaaaggagaaatag > SRR7892090.1241111/1‑70 (MQ=60)
GTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGGAAAAGCAAAAAGCCCACAAAGAGgtggaaacgt > SRR7892090.111327/1‑90 (MQ=60)
TACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTG < SRR7892090.764267/100‑1 (MQ=60)
TACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTG < SRR7892090.311629/100‑1 (MQ=60)
ACTGGAAGGTACCAGACCACCTACAACCAATTAAACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGA < SRR7892090.166182/100‑1 (MQ=60)
tcaccaaacaaacaaaacaaaaaaagtagcagtggaaagGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTC < SRR7892090.1642701/61‑1 (MQ=60)
GAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTC < SRR7892090.743345/100‑1 (MQ=60)
AGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCcgtttaaatagcaaaatgtcccccaaagattgaaaaagttttaggatc > SRR7892090.401830/1‑52 (MQ=60)
ACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGACGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACC > SRR7892090.952941/1‑100 (MQ=60)
AGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGGAACAGCAAATGGCCCACAAAAAATTGAAAGCATTGATTTCGTAACCCCA > SRR7892090.279009/1‑100 (MQ=60)
AGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCA < SRR7892090.331032/100‑1 (MQ=60)
AGACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCA < SRR7892090.1115113/100‑1 (MQ=60)
GACCACCTACAACCAATTAGACTATGTAAGGGTGAAGAGGCGGCTGTTGAAAAAGAAAATGGCCCccaaaaggtggaaatggttgattcggtaacccccg > SRR7892090.11140/1‑65 (MQ=60)
GACCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCAC < SRR7892090.248296/100‑1 (MQ=60)
CCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGT < SRR7892090.1646641/100‑1 (MQ=60)
CCACCTACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGT < SRR7892090.1405209/100‑1 (MQ=60)
CACCTACAACCAATTAGACTACGTAAGGGTGAAGACGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTG < SRR7892090.796655/100‑1 (MQ=60)
ACAACCAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCACATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGG < SRR7892090.364409/100‑1 (MQ=60)
CAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTT < SRR7892090.1090584/100‑1 (MQ=60)
CAATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTT < SRR7892090.1577133/100‑1 (MQ=60)
ATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTAT < SRR7892090.733154/100‑1 (MQ=60)
ATTAGACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTAT < SRR7892090.1285114/100‑1 (MQ=60)
AGACCACGTAAGGGTGAAGAGGCGGCTGGTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATT < SRR7892090.847729/100‑1 (MQ=60)
GACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTG < SRR7892090.100357/100‑1 (MQ=60)
GACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTG < SRR7892090.171757/100‑1 (MQ=60)
ACTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCCCAAAGAGTTGAAATCGTTGATGTCGTAACCCCACGTGATGGGGTTTTATATTGG > SRR7892090.8113/1‑100 (MQ=60)
CTACGTAAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTTTATTTGA > SRR7892090.1583363/1‑100 (MQ=60)
AAGGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGAAAAATG < SRR7892090.118737/100‑1 (MQ=60)
GGGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGAAAAATGGC < SRR7892090.1031283/100‑1 (MQ=60)
GGTGAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGAAAAATGGCG < SRR7892090.846679/100‑1 (MQ=60)
GAAGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGAAAAATGGCGAAG < SRR7892090.405618/100‑1 (MQ=60)
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GAAAATCATTAAAGCAGTCCATATTAATGGAACTGACAAACGTAAACGTTACTGGAAGGTACCAGACCACCTACAACCAATTAGACTACGTAAGGGTGACGAGGCGGCTGTTGAAACAGCAAATGGCCCACAAAGAGTTGAAATCGTTGATGTCGTAACCTCACGTGATGGGTTTTTATATTGGAAAAATGGCGAAG > CP002094/1238380‑1238576
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
