Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F50 I1 R2
|
775 |
327.3 |
10718052 |
97.2% |
10417946 |
138.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP025268 |
3,743,290 |
+C |
intergenic (‑66/‑116) |
yiaJ ← / → galK |
IclR family transcriptional regulator YiaJ/galactokinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP025268 | 3,743,289 | 1 | . | C | 98.1%
| 350.7
/ ‑0.2
| 107 | intergenic (‑65/‑117) | yiaJ/galK | IclR family transcriptional regulator YiaJ/galactokinase |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base C (42/63); total (44/63) |
| Fisher's exact test for biased strand distribution p-value = 1.67e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
Only 100 of 112 total aligned reads displayed.
GGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAA‑C‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAACCCAGGAGGCAGATCATGAGTCTGAAAGAA > NZ_CP025268/3743155‑3743420
|
ggCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAA‑ccaat < 2:3655390/140‑5 (MQ=255)
ggCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAA‑ccaat < 1:4126085/140‑5 (MQ=255)
ggCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAA‑ccaat < 1:2780634/140‑5 (MQ=255)
gCTTCCGGCTGGACGCTCTTTTTCCTGCGCCCTCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAA‑ccaatt < 2:4800042/140‑6 (MQ=255)
ttCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGa < 2:3853957/140‑1 (MQ=255)
ccGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCCTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGAtt > 2:2598167/1‑140 (MQ=255)
ggCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATCTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTTAtttt > 2:2444204/1‑140 (MQ=255)
tGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTAt < 1:4087996/140‑1 (MQ=255)
tGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTAt < 1:4922263/140‑1 (MQ=255)
ggACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATg > 1:1051179/1‑140 (MQ=255)
ggACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATg > 1:2650835/1‑140 (MQ=255)
ctctTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCttt < 1:2000527/140‑1 (MQ=255)
ctctTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCttt < 1:4585270/140‑1 (MQ=255)
tctTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCtttt > 1:76654/1‑140 (MQ=255)
tctTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCtttt > 2:121582/1‑140 (MQ=255)
ttttCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGaa < 1:4700410/140‑1 (MQ=255)
ttttCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGaa < 2:4509907/140‑1 (MQ=255)
ttCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAAt > 1:5273416/1‑140 (MQ=255)
ttCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAAt < 1:3805654/140‑1 (MQ=255)
tCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAAtt < 2:1320312/140‑1 (MQ=255)
cTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATtca < 2:2137334/140‑1 (MQ=255)
tGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAATTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATtcat < 2:4725331/140‑1 (MQ=255)
gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATtcatc < 1:2262988/140‑1 (MQ=255)
gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATtcatc > 1:1043969/1‑140 (MQ=255)
gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATtcatc > 2:3004743/1‑140 (MQ=255)
gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATtcatc > 1:2584491/1‑140 (MQ=255)
cgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATtcatca < 1:2012919/140‑1 (MQ=255)
cgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATtcatca < 1:2013862/140‑1 (MQ=255)
cgcCATCTCGTTCTCTTTGTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATtcatca < 2:4065242/140‑1 (MQ=255)
gcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATCACC‑AATTGATTTTTATGTCTTTTGAAATTCATCaa < 1:3925224/140‑1 (MQ=255)
gcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCaa < 1:3334651/140‑1 (MQ=255)
gcCATCTCGTTCTCTTGTTTTCCCATCACTTCATTCCCCACTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGTCGTAGATCACGCTCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCaa < 2:4429373/140‑1 (MQ=255)
ttCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgc > 1:3153279‑M1/1‑133 (MQ=255)
ttCTCTTTTTTTCCCATAACTTCTTTCCCCATTTTGTCACGACCTGATAGTAAAGCAAAGTGTGCCGTAGTACACGATCTCAACAGATAATTTATAA‑CAAATTGCTTTTTAGGTCTTTTGAAATTCATCAATcagattgc > 2:3877444/1‑133 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:4035346‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:2780701‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:4623346‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:2455713‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:1486‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:3502756‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:3608950‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTACTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:4926487‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTGCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTCTAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:3504064‑M1/140‑9 (MQ=255)
tcccttttTTTCCCATCCCTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATATCGACAGATAATTGATAACC‑AGTTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:2096446‑M1/137‑9 (MQ=255)
cctcttTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:2135311‑M1/139‑9 (MQ=255)
tttttttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCGCGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgt > 1:3356912‑M1/1‑128 (MQ=255)
tttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaa < 2:1725262‑M1/140‑17 (MQ=255)
tttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaa < 2:1348575‑M1/140‑17 (MQ=255)
tttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaa < 2:3941429‑M1/140‑17 (MQ=255)
tttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaa < 2:524106‑M1/140‑17 (MQ=255)
tCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaa < 2:2556966‑M1/140‑19 (MQ=255)
aTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtga > 2:3989450‑M1/1‑118 (MQ=255)
aTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtga > 2:1791851‑M1/1‑118 (MQ=255)
tcccttctttccCCATTCTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 2:4425620‑M1/137‑24 (MQ=255)
tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 1:4118425‑M1/140‑24 (MQ=255)
tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 1:4623904‑M1/140‑24 (MQ=255)
tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 1:229740‑M1/140‑24 (MQ=255)
tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 2:1989418‑M1/140‑24 (MQ=255)
tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 1:426781‑M1/140‑24 (MQ=255)
tCACTTCTTTCCACATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 2:4327834‑M1/140‑24 (MQ=255)
tcttTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgata < 2:2370663‑M1/140‑29 (MQ=255)
cttTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatat > 2:1844489‑M1/1‑111 (MQ=255)
tCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACTATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatt > 2:4139494‑M1/1‑108 (MQ=255)
cccATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg > 1:858764‑M1/1‑106 (MQ=255)
cccATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg > 1:858462‑M1/1‑106 (MQ=255)
ttttGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaat < 2:344775‑M1/140‑39 (MQ=255)
tttGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatc < 1:4293983‑M1/140‑40 (MQ=255)
tttGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatc > 2:4293983‑M1/1‑101 (MQ=255)
tttGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatc < 1:467125‑M1/140‑40 (MQ=255)
tttGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatc > 2:1956778‑M1/1‑101 (MQ=255)
tCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc > 1:3612241‑M1/1‑92 (MQ=255)
tCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgctaaaaagtgatcgatatatttcaaatcaagtttcgc > 2:5336774‑M1/1‑92 (MQ=255)
tAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaa > 1:2032332‑M1/1‑83 (MQ=255)
aGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaat > 2:4376133‑M1/1‑82 (MQ=255)
gcgcAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCacattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatt > 2:4020398‑M1/1‑81 (MQ=255)
gcgcAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAA‑CGAATTGATTTTTATGTCTTTTGAAATTCATCCATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatt > 2:4714564‑M1/1‑81 (MQ=255)
cgcAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattt > 2:1183337‑M1/1‑80 (MQ=255)
cAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatttta > 2:576606‑M1/1‑78 (MQ=255)
tgtgCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagcca > 1:27654‑M1/1‑73 (MQ=255)
tgCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaa > 2:1041663‑M1/1‑71 (MQ=255)
gCCGTAGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaa > 1:2337799‑M1/1‑70 (MQ=255)
tAGTTCACGATCTCGACAGGTAATTTATAACC‑AAACGATTTTTATGTCTTGTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcagattgaaattttaagccaaaaaagc > 2:1123396‑M1/1‑66 (MQ=255)
aGTTCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcg < 2:2209581‑M1/140‑76 (MQ=255)
ttCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 1:5249339‑M1/1‑63 (MQ=255)
ttCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 1:3579401‑M1/1‑63 (MQ=255)
ttCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 2:4099035‑M1/1‑63 (MQ=255)
ttCACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 2:2776022‑M1/1‑63 (MQ=255)
cACGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatca > 1:4932749‑M1/1‑61 (MQ=255)
aCGATCTCGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaa < 1:4622266‑M1/140‑81 (MQ=255)
aTCTCGCCAGATAATTTATAACC‑GATTGATTTTTATGTCTTTTGAAATTCATCCATCagattgccttgttaaaaagtcatcgatatacttgaaatcaagtttcacatattgaaattttaagccaaaaaagcgatcaaaaa < 2:4745447‑M1/140‑84 (MQ=255)
cGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca > 2:2206089‑M1/1‑53 (MQ=255)
cGACAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca > 2:3126634‑M1/1‑53 (MQ=255)
aCAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 2:2584491‑M1/140‑90 (MQ=255)
aCAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAAGAagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgaatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 2:4854600‑M1/140‑90 (MQ=255)
tagATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaagg < 1:4728471‑M1/139‑91 (MQ=255)
cAGATAATTTATAACC‑AATTGCTTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaacagcgatcaaaaaaacaagg < 1:820447‑M1/140‑91 (MQ=255)
cAGATAATTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaagg < 1:1317487‑M1/140‑91 (MQ=255)
aaTTTGTAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaacgtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcc < 2:4709640‑M1/140‑96 (MQ=255)
aaTTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcc < 1:977112‑M1/140‑96 (MQ=255)
aTTTATAACC‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcct < 1:3825325‑M1/140‑97 (MQ=255)
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GGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATAA‑C‑AATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAACCCAGGAGGCAGATCATGAGTCTGAAAGAA > NZ_CP025268/3743155‑3743420
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AA‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAACCCA > NZ_CP025268/3743140‑3743394
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CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTTGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AA‑C < SRR14920189.1549201/151‑1 (MQ=60)
CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AA‑C < SRR14920189.257602/151‑1 (MQ=60)
CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AA‑C < SRR14920189.3547948/151‑1 (MQ=60)
CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AA‑C < SRR14920189.1538057/151‑1 (MQ=60)
GGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATG > SRR14920189.1053599/1‑151 (MQ=60)
GGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATG < SRR14920189.2786848/151‑1 (MQ=60)
GGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATG > SRR14920189.2656786/1‑151 (MQ=60)
GGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATG < SRR14920189.4136254/151‑1 (MQ=60)
CGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTT > SRR14920189.79052/1‑151 (MQ=60)
CGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTT > SRR14920189.76908/1‑151 (MQ=60)
TGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAA < SRR14920189.4098071/151‑1 (MQ=60)
TGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAA < SRR14920189.4934678/151‑1 (MQ=60)
TGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAA < SRR14920189.3182487/151‑1 (MQ=60)
GGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAAT > SRR14920189.5286369/1‑151 (MQ=60)
CTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATC < SRR14920189.2005139/151‑1 (MQ=60)
CTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATC > SRR14920189.4080019/1‑151 (MQ=60)
CTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATC > SRR14920189.1046371/1‑151 (MQ=60)
CTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATC < SRR14920189.4596635/151‑1 (MQ=60)
CTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATC > SRR14920189.2590335/1‑151 (MQ=60)
TTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920189.4712216/151‑1 (MQ=60)
TTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCag < SRR14920189.3814574/151‑3 (MQ=60)
GCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgc > SRR14920189.3160707/1‑144 (MQ=60)
GCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgc < SRR14920189.2268184/151‑8 (MQ=60)
CGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < SRR14920189.2017564/151‑9 (MQ=60)
CGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < SRR14920189.2018508/151‑9 (MQ=60)
GCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATCAC‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcct < SRR14920189.3934936/151‑10 (MQ=60)
GCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcct < SRR14920189.3342632/151‑10 (MQ=60)
ATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCGCGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgt > SRR14920189.3364943/1‑139 (MQ=60)
TTCTC‑TTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaag < SRR14920189.2164657/151‑20 (MQ=60)
TCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaag < SRR14920189.1490/151‑20 (MQ=60)
TCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaag < SRR14920189.4634834/151‑20 (MQ=60)
TCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaag < SRR14920189.3617423/151‑20 (MQ=60)
CCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaag < SRR14920189.2140260/151‑20 (MQ=60)
TCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg < SRR14920189.4646328/151‑35 (MQ=60)
TCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg > SRR14920189.860536/1‑117 (MQ=60)
TCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg < SRR14920189.427875/151‑35 (MQ=60)
TCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg < SRR14920189.4128587/151‑35 (MQ=60)
TCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg > SRR14920189.860839/1‑117 (MQ=60)
TCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg < SRR14920189.230383/151‑35 (MQ=60)
TCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg < SRR14920189.4635402/151‑35 (MQ=60)
ATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc > SRR14920189.3620720/1‑103 (MQ=60)
TTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcat < SRR14920189.468342/151‑51 (MQ=60)
TTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcat < SRR14920189.4304580/151‑51 (MQ=60)
CGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaa > SRR14920189.2037019/1‑94 (MQ=60)
GTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagcca > SRR14920189.27768/1‑84 (MQ=60)
GCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaa > SRR14920189.2343134/1‑81 (MQ=60)
GTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920189.5262259/1‑74 (MQ=60)
GTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920189.3587828/1‑74 (MQ=60)
GTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920189.4945175/1‑72 (MQ=60)
ACGATCTCGACAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920189.4633744/60‑1 (MQ=60)
TAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920189.4740522/50‑1 (MQ=60)
CAGATAATTTAT‑AACCAATTGCTTTTTATGTCTTTTGAAATTCATCAATC < SRR14920189.822445/50‑1 (MQ=51)
CAGATAATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920189.1320455/50‑1 (MQ=60)
AATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920189.979393/45‑1 (MQ=60)
ATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920189.3834465/44‑1 (MQ=60)
ATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920189.3067746/1‑44 (MQ=60)
ATTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920189.3067734/1‑44 (MQ=60)
TTTAT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920189.3486946/1‑43 (MQ=60)
AT‑AACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920189.5237619/40‑1 (MQ=60)
CAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920189.1421756/1‑35 (MQ=60)
CAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920189.1284518/1‑35 (MQ=60)
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CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAT‑AA‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAACCCA > NZ_CP025268/3743140‑3743394
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
