Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F21 I1 R7	781	589.5	21734725	98.3%	21365234	134.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP025268	1,620,861	T→C	A93A (GCT→GCC)	yneK →	putative protein YneK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP025268	1,620,861	0	T	C	100.0%	569.2 / NA	163	A93A (GCT→GCC)	yneK	putative protein YneK
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (92/71); total (92/71)

Only 100 of 163 total aligned reads displayed.

GTCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCTAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGC  >  NZ_CP025268/1620726‑1620997

gTCTTTAAACATCAACTCAGCCACAATAATGATATTTAATAACCTTGACCACTTATCAGATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTCTACAATGAACTGGGTCAGTTTAAACTCTCTTATCCCGCCAGGa                                                                                                                                      >  2:7983160/1‑140 (MQ=255)

gTCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGa                                                                                                                                      >  1:3706357/1‑140 (MQ=255)

gTCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGa                                                                                                                                      >  1:3706307/1‑140 (MQ=255)

gTCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGa                                                                                                                                      >  2:7983147/1‑140 (MQ=255)

            cAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGAcaca                                                                                                                          >  1:9203221/1‑140 (MQ=255)

            cAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGAcaca                                                                                                                          >  1:4921001/1‑140 (MQ=255)

                      acaAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAatat                                                                                                                <  2:8546376/140‑1 (MQ=255)

                         aaaaaGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGa                                                                                                             <  1:10077656/140‑1 (MQ=255)

                             aGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAAttt                                                                                                         <  2:9415731/140‑1 (MQ=255)

                                 atTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAgg                                                                                                     <  2:3706357/140‑1 (MQ=255)

                                 atTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAgg                                                                                                     <  2:3706307/140‑1 (MQ=255)

                                 atTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAgg                                                                                                     <  1:4941030/140‑1 (MQ=255)

                                 atTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAgg                                                                                                     <  1:4302707/140‑1 (MQ=255)

                                             tGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAgg                                                                                                     <  1:2198184/128‑1 (MQ=255)

                                             tGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAgg                                                                                                     <  2:3821532/128‑1 (MQ=255)

                                             tGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAgg                                                                                                     <  1:10317646/128‑1 (MQ=255)

                                             tGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAgg                                                                                                     >  1:3821532/1‑128 (MQ=255)

                                             tGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAgg                                                                                                     >  2:2198184/1‑128 (MQ=255)

                                                 aaCTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAg                                                                                     <  1:2540793/140‑1 (MQ=255)

                                                      aTCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCta                                                                                >  2:1210839/1‑140 (MQ=255)

                                                            tatTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGaa                                                                                                            >  1:9212196/1‑106 (MQ=255)

                                                             atTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGa                                                                                                                                      >  1:587905/1‑79 (MQ=255)

                                                             atTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGa                                                                                                                                      <  2:587905/79‑1 (MQ=255)

                                                             atTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATgg                                                                                                                                  <  1:4677530/83‑1 (MQ=255)

                                                             atTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATgg                                                                                                                                  >  2:4677530/1‑83 (MQ=255)

                                                             atTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATAtt                                                                                                               <  2:979266/102‑1 (MQ=255)

                                                             atTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATAtt                                                                                                               >  1:979266/1‑102 (MQ=255)

                                                             atTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTatttattt                                                                         >  1:7793966/1‑140 (MQ=255)

                                                              ttCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGaaa                                                                                                                    <  1:5054070/96‑1 (MQ=255)

                                                              ttCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGaaa                                                                                                                    >  2:5054070/1‑96 (MQ=255)

                                                              ttCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAgg                                                                                                     <  2:10637735/111‑1 (MQ=255)

                                                              ttCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTAtttattta                                                                        >  2:223831/1‑140 (MQ=255)

                                                              ttCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTAtttattta                                                                        >  2:3398360/1‑140 (MQ=255)

                                                                 agagGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGaaa                                                                                                                    >  1:3626761/1‑93 (MQ=255)

                                                                 agagGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGaaa                                                                                                                    <  2:3626761/93‑1 (MQ=255)

                                                                 agagGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGACAATATTGAAttt                                                                                                         <  1:10179244/104‑1 (MQ=255)

                                                                 agagGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAAttt                                                                                                         <  1:5647938/104‑1 (MQ=255)

                                                                 agagGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAAttt                                                                                                         >  2:5647938/1‑104 (MQ=255)

                                                                 agagGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAAttt                                                                                                         >  2:10179496/1‑104 (MQ=255)

                                                                 agagGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCACTATTTATTTAGAt                                                                     >  2:400014/1‑140 (MQ=255)

                                                                  gagGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGtaat                                                                                              >  2:252888/1‑114 (MQ=255)

                                                                   agGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACaa                                                                                                                         >  1:689522/1‑86 (MQ=255)

                                                                   agGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGaaaa                                                                                                                   >  2:9533220/1‑92 (MQ=255)

                                                                   agGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGaaaa                                                                                                                   <  1:9533221/92‑1 (MQ=255)

                                                                   agGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGaaa                                                                                                                    >  1:2618578/1‑91 (MQ=255)

                                                                   agGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGaaa                                                                                                                    <  2:2618578/91‑1 (MQ=255)

                                                                   agGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATaa                                                                   >  2:4599206/1‑140 (MQ=255)

                                                                      aCTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAAttt                                                                >  1:2168804/1‑140 (MQ=255)

                                                                        ttcttTTCGGGGTAACGACACGCTATACCATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAAGATTGAATTTCAGGTCGTAATAAATTTAAGCCGTGGTTATTTATATAATTTTc                                                              >  2:3787981/1‑140 (MQ=255)

                                                                        ttcttTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAg                                                                                                                                        >  2:2204312/1‑66 (MQ=255)

                                                                        ttcttTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAg                                                                                                                                        <  1:2204336/66‑1 (MQ=255)

                                                                        ttcttTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGtaat                                                                                              <  2:125369/108‑1 (MQ=255)

                                                                        ttcttTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGtaat                                                                                              >  1:125159/1‑108 (MQ=255)

                                                                        ttcttTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGtaat                                                                                              >  1:125369/1‑108 (MQ=255)

                                                                        ttcttTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTc                                                              >  2:3418347/1‑140 (MQ=255)

                                                                        ttcttTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTc                                                              >  2:1773447/1‑140 (MQ=255)

                                                                               cGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAAttt                                                                                                         <  2:5109014/90‑1 (MQ=255)

                                                                               cGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAAttt                                                                                                         <  2:6581562/90‑1 (MQ=255)

                                                                               cGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAAttt                                                                                                         <  2:4241231/90‑1 (MQ=255)

                                                                                            cGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAgg                                                                                                     >  1:4310346/1‑81 (MQ=255)

                                                                                            cGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAgg                                                                                                     <  2:4310346/81‑1 (MQ=255)

                                                                                            cGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAat                                          >  1:6014014/1‑140 (MQ=255)

                                                                                              cTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAatat                                        >  1:5493210/1‑140 (MQ=255)

                                                                                                 taCAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGa                                                                                                                      <  2:2817258/59‑1 (MQ=255)

                                                                                                 taCAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGa                                                                                                                      >  1:2817258/1‑59 (MQ=255)

                                                                                                 taCAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATAtttt                                     >  2:4103246/1‑140 (MQ=255)

                                                                                                 taCAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATAtttt                                     >  1:5331983/1‑140 (MQ=255)

                                                                                                    aaTGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAAttt                                                                                                         <  2:2652175/69‑1 (MQ=255)

                                                                                                    aaTGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAAttt                                                                                                         >  1:2652175/1‑69 (MQ=255)

                                                                                                     aTGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTgc                                 <  1:8032762/140‑1 (MQ=255)

                                                                                                      tGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGaa                                                                                                                                >  1:10656984/1‑44 (MQ=255)

                                                                                                      tGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAAttt                                                                                                         >  1:6294277/1‑67 (MQ=255)

                                                                                                      tGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAAttt                                                                                                         <  2:6294277/67‑1 (MQ=255)

                                                                                                      tGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTgcg                                >  2:7502114/1‑140 (MQ=255)

                                                                                                      tGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTgcg                                >  2:10153952/1‑140 (MQ=255)

                                                                                                       gAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTgcgc                               >  1:5547786/1‑140 (MQ=255)

                                                                                                        aaaaGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCt                              >  1:8224820/1‑140 (MQ=255)

                                                                                                        aaaaGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCt                              >  2:1548416/1‑140 (MQ=255)

                                                                                                         aaaGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTc                             >  1:4011112/1‑140 (MQ=255)

                                                                                                          aaGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTcc                            <  1:1771882/140‑1 (MQ=255)

                                                                                                           aGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTccc                           <  2:5552004/140‑1 (MQ=255)

                                                                                                           aGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTccc                           >  1:6504691/1‑140 (MQ=255)

                                                                                                              ttCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAgg                                                                                                     >  1:4063807/1‑63 (MQ=255)

                                                                                                               tCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTcccaacc                       <  2:8397006/140‑1 (MQ=255)

                                                                                                                cAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGgt                                                                                                    <  1:4225449/62‑1 (MQ=255)

                                                                                                                cAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGgt                                                                                                    >  2:4225115/1‑62 (MQ=255)

                                                                                                                cAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTA‑TTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTcccaaccca                     <  2:7557271/140‑1 (MQ=255)

                                                                                                                 aGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTAATTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTcccaaccca                     <  2:6926886/140‑1 (MQ=255)

                                                                                                                    ttAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAg                  <  2:159148/140‑1 (MQ=255)

                                                                                                                       aaCTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTg                                                                                                              >  1:3615172/1‑45 (MQ=255)

                                                                                                                       aaCTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTccc                           <  1:8217394/128‑1 (MQ=255)

                                                                                                                       aaCTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTccc                           >  2:8217393/1‑128 (MQ=255)

                                                                                                                       aaCTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACACAAAGCCt               >  2:1342431/1‑140 (MQ=255)

                                                                                                                        aCTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTg              <  1:4575723/140‑1 (MQ=255)

                                                                                                                             cTTATCCCGCCAGGAATGGAAGACACAAAGAAAATAtt                                                                                                               <  1:223396/38‑1 (MQ=255)

                                                                                                                             cTTATCCCGCCAGGAATGGAAGACACAAAGAAAATAtt                                                                                                               >  2:223396/1‑38 (MQ=255)

                                                                                                                             cTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAgg                                                                                                     <  2:10482565/48‑1 (MQ=255)

                                                                                                                             cTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAgg                                                                                                     >  1:10482566/1‑48 (MQ=255)

                                                                                                                             cTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGtaata                                                                                             >  2:8660665/1‑56 (MQ=255)

                                                                                                                             cTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACt         <  1:7983148/140‑1 (MQ=255)

GTCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCTAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGC  >  NZ_CP025268/1620726‑1620997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAGTGGCGCACGTCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCTAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGT  >  NZ_CP025268/1620715‑1621001

GAGTGGCGCACGTCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGA                                                                                                                                          >  SRR14920197.3867859/1‑151 (MQ=60)

GAGTGGCGCACGTCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGA                                                                                                                                          >  SRR14920197.3867808/1‑151 (MQ=60)

 cccccccccccccccccccccccttttcaagcagaagacggcatacgagatgtagagaggtctcgtgggctcggagatgtgtataagagacaGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAA                                                                                                                                         <  SRR14920197.8583618/59‑1 (MQ=60)

 cccccccccccccccccccccccccccccccctcttttcaagcagaagacggcatacgagatgtagagaggtctcgtgggctcggagatgtgtataagagacaGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAA                                                                                                                                         <  SRR14920197.8030492/48‑1 (MQ=60)

 agaagacggcatacgagatgtagagaggtctcgtgggctcggagatgtgtataagagacagCTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAA                                                                                                                                         <  SRR14920197.7024423/90‑1 (MQ=60)

 AGTGGCGCACGTCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAA                                                                                                                                         <  SRR14920197.8044236/151‑1 (MQ=60)

  GTGGCGCACGTCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAAT                                                                                                                                        >  SRR14920197.8152434/1‑151 (MQ=60)

      cccccccccccccccccccccccccccccttttcaagcagaagacggcatacgcgatgtagagaggtctcgtgggctcggagatgtgtataagagacaGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAA                                                                                                                                    <  SRR14920197.10789331/53‑1 (MQ=60)

       cggcatacgcgatgtagagaggtctcgtgggctcggagatgtgtataagagacagCTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAG                                                                                                                                   <  SRR14920197.5320946/96‑1 (MQ=60)

       ccccccccccccccccccccccccccccttttcaagcagaagacggcatacgagatgtagagaggtctcgtgggctcggagatgtgtataagagacaGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAG                                                                                                                                   <  SRR14920197.8922419/54‑1 (MQ=60)

       GCACGTCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAG                                                                                                                                   <  SRR14920197.9675818/151‑1 (MQ=60)

         gcagaagacggcatacgagatgtagagaggtctcgtgggctcggagatgtgtataagagacagATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGAC                                                                                                                                 <  SRR14920197.2300672/88‑1 (MQ=60)

         gcagaagacggcatacgagatgtagagaggtctcgtgggctcggagatgtgtataagagacagATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGAC                                                                                                                                 <  SRR14920197.2300648/88‑1 (MQ=60)

          CGTCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACA                                                                                                                                >  SRR14920197.9817536/1‑151 (MQ=60)

            TCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACA                                                                                                                              >  SRR14920197.11122006/1‑151 (MQ=60)

            TCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACA                                                                                                                              >  SRR14920197.9595925/1‑151 (MQ=60)

            TCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACA                                                                                                                              >  SRR14920197.5134741/1‑151 (MQ=60)

            TCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACA                                                                                                                              >  SRR14920197.5945694/1‑151 (MQ=60)

            TCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACA                                                                                                                              >  SRR14920197.5794182/1‑151 (MQ=60)

             CTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAA                                                                                                                             >  SRR14920197.166643/1‑151 (MQ=60)

               agatgtagagaggtctcgtgggctcggagatgtgtataagagacagACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAG                                                                                                                           <  SRR14920197.4880506/105‑1 (MQ=60)

                 aggtctcgtgggctcggagatgtgtataagagacagaCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAA                                                                                                                         <  SRR14920197.10000161/114‑1 (MQ=60)

                  AACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGctgtctcttat                                                                                                                        >  SRR14920197.5268140/1‑140 (MQ=60)

                    ccccccccccccccccccccccccaccccccccccccacccgatggtcacagcagaattctgcatccgagatgtagagaggtctcgtgggatcggagatgtgtataagagacagCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAAT                                                                                                                      <  SRR14920197.4106446/37‑1 (MQ=60)

                      TCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATAT                                                                                                                    <  SRR14920197.391499/151‑1 (MQ=60)

                        ccccccccccccccccccccccccccccacttttcaagcagaagacggcatacgagatgtagagaggtctcgtgggctcggagatgtgtntaagagacagAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTG                                                                                                                  <  SRR14920197.10476486/51‑1 (MQ=60)

                           ccccccccccttttcaagcagaagacggcatacgagatgtagagaggtctcgtgggctcggagatgtgtataagagacagATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAAT                                                                                                               <  SRR14920197.8787908/71‑1 (MQ=60)

                             tctcgtgggctcggagatgtgtataagagacagCTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTT                                                                                                             <  SRR14920197.5273917/118‑1 (MQ=60)

                              gaggtctcgtgggctcggagatgtgtataagagacagCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTC                                                                                                            <  SRR14920197.9939751/114‑1 (MQ=60)

                                 gaggtctcgtgggctcggagatgtgtataagagacagATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGG                                                                                                         <  SRR14920197.7692647/114‑1 (MQ=60)

                                  ccccccccccccccccccccattttcaagcagaagacggcatacgagatgtagagaggtctcgtgggctcggagatgtgtataagagacagGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGT                                                                                                        <  SRR14920197.233731/60‑1 (MQ=60)

                                    ttcaagcagaagacggcatacgagatgtagagaggtctcgtgggctcggagatgtgtataagagacagGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAG                                                                                                      <  SRR14920197.4817810/83‑1 (MQ=60)

                                    AAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAG                                                                                                      <  SRR14920197.10505959/151‑1 (MQ=60)

                                        gctcggagatgtgtataagagacagATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGACAATATTGAATTTCAGGTAGTAAT                                                                                                  <  SRR14920197.10612441/126‑1 (MQ=60)

                                        gctcggagatgtgtataagagacagATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGACAATATTGAATTTCAGGTAGTAAT                                                                                                  <  SRR14920197.10612179/126‑1 (MQ=60)

                                        gctcggagatgtgtataagagacagATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAAT                                                                                                  <  SRR14920197.5894215/126‑1 (MQ=60)

                                            tgggctcggagatgtgtataagagacagATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAAT                                                                                              <  SRR14920197.2668887/123‑1 (MQ=60)

                                            GTTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAAT                                                                                              <  SRR14920197.2294255/151‑1 (MQ=60)

                                            GTTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAAT                                                                                              <  SRR14920197.10756634/151‑1 (MQ=60)

                                            ATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAAT                                                                                              <  SRR14920197.5155717/151‑1 (MQ=60)

                                            ATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAAT                                                                                              <  SRR14920197.4489991/151‑1 (MQ=60)

                                             tcaagcagaagacggcatacgagatgtagagaggtctcgtgggctcggagatgtgtataagagacagATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATT                                                                                             <  SRR14920197.4408976/84‑1 (MQ=60)

                                             tcaagcagaagacggcatacgagatgtagagaggtctcgtgggctcggagatgtgtataagagacagATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATT                                                                                             <  SRR14920197.4409332/84‑1 (MQ=60)

                                             TTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATC                                                                                             >  SRR14920197.3987674/1‑151 (MQ=60)

                                                   gtgtataagagacagTCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCC                                                                                       <  SRR14920197.264514/136‑1 (MQ=60)

                                                   AACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCC                                                                                       <  SRR14920197.857505/151‑1 (MQ=60)

                                                    cccttttcaagcagaagacggcatacgagatgtagagaggtctcgtgggctcggagatgtgtataagagacagGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCC                                                                                      <  SRR14920197.9031639/78‑1 (MQ=60)

                                                      CTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGctgtctcttatacacatctccgagcccacgagacctctctacatctc                                                                                    >  SRR14920197.1260935/1‑104 (MQ=60)

                                                            AACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTctgtctcttatacacatctccga                                                                              >  SRR14920197.9605310/1‑128 (MQ=60)

                                                            AACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATT                                                                              <  SRR14920197.2652115/151‑1 (MQ=60)

                                                             ACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTctgtctcttatacacatctccgagccc                                                                             >  SRR14920197.1022362/1‑124 (MQ=60)

                                                             ACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTT                                                                             >  SRR14920197.8129636/1‑151 (MQ=60)

                                                             AATTATCATATATTCAGAGGACTTCTTTTCTGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACctgtctcttatacacatctccgagcccacgagacctctctacatctcgta                                                                             >  SRR14920197.614251/1‑101 (MQ=60)

                                                              CTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATctgtctcttatacacatc                                                                            >  SRR14920197.11090713/1‑133 (MQ=60)

                                                                 ATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCtgtctcttatacacatctccgagcccacgagacct                                                                         >  SRR14920197.5150600/1‑116 (MQ=60)

                                                                 ATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCtgtctcttatacacatctccgagcccacgagacct                                                                         >  SRR14920197.3785125/1‑116 (MQ=60)

                                                                 ATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCtgtctcttatacacatctccgagcccacgagacct                                                                         >  SRR14920197.3784840/1‑116 (MQ=60)

                                                                   CATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGctgtctcttatacacatctccgagcccacgagacctctctaca                                                                       >  SRR14920197.720290/1‑108 (MQ=60)

                                                                   CATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCtgtctcttatacacatctccgagcccacgagacctct                                                                       >  SRR14920197.2733154/1‑114 (MQ=60)

                                                                   CATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAA                                                                       >  SRR14920197.569042/1‑151 (MQ=60)

                                                                      ATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTT                                                                    >  SRR14920197.2263527/1‑151 (MQ=60)

                                                                        ATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATctgtctcttatacacatctccgagcccacgagacctctctacatctcgtatgccgtcttctgcttgaaaa                                                                  >  SRR14920197.8394199/1‑81 (MQ=60)

                                                                        ATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGctgtctcttatacacatctccgagcccactagacctctctacaacgcgtatgccgtcttatgctt                                                                  >  SRR14920197.2770067/1‑86 (MQ=60)

                                                                        ATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTgtctcttatacacatctcc                                                                  >  SRR14920197.131026/1‑132 (MQ=60)

                                                                        ATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTgtctcttatacacatctcc                                                                  >  SRR14920197.131242/1‑132 (MQ=60)

                                                                               GGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATctgtctcttatanacatctccgagcccacgagacctctc                                                           >  SRR14920197.6867221/1‑112 (MQ=60)

                                                                               GGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATctgtctcttatacacatctccgagcccacgagacctctc                                                           >  SRR14920197.4425782/1‑112 (MQ=60)

                                                                               GGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATctgtctcttatacacatctccgagcccacgagacctctc                                                           >  SRR14920197.5331325/1‑112 (MQ=60)

                                                                                  CTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATctgtctcttatacacatctccgagcccacgagacctct                                                        >  SRR14920197.4141228/1‑113 (MQ=60)

                                                                                            GGGTAACGACACGCTATACAATGGAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGctgtctcttatacacatctccgagcccacgagacctctctacatctcgtatgccgtcttctgcttgaaaaggggggggggggggg                                              >  SRR14920197.10259326/1‑66 (MQ=60)

                                                                                            GGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATctgtctcttatacacatctccgagcccacgagacctctctacatctcg                                              >  SRR14920197.4497945/1‑103 (MQ=60)

                                                                                            GGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAAT                                              >  SRR14920197.6276202/1‑151 (MQ=60)

                                                                                              GTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATAT                                            >  SRR14920197.5732879/1‑151 (MQ=60)

                                                                                                 ACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATctgtctcttatacacatctccgagcccacgagacctctctacatctcgtatgccgtcttctgcttgaaaa                                         >  SRR14920197.2939735/1‑81 (MQ=60)

                                                                                                 ACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTT                                         >  SRR14920197.5564360/1‑151 (MQ=60)

                                                                                                    ACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATctgtctcttatacacatctccgagcccacgagacctctctacatcgcgtatgccgtcttc                                      >  SRR14920197.2768147/1‑91 (MQ=60)

                                                                                                      ACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAActgtctcttatacacatctccgagcccacgagacctctctacatctcgtatgccgtcttctgcttgaaaaggggggggggggggg                                    >  SRR14920197.11110783/1‑66 (MQ=60)

                                                                                                      ACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAActgtctcttatacacatctccgagcccacgagacctctctacatcgcgtatgccgtcttctgcttgaaaaggggggggggggggg                                    >  SRR14920197.1261340/1‑66 (MQ=60)

                                                                                                      ACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATctgtctcttatacacatctccgagcccacgagacctctctacatctcgtatgccgtcttctgcttgaaaagggggggggg                                    >  SRR14920197.7431648/1‑71 (MQ=60)

                                                                                                      ACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATctgtctcttatacacatctccgagcccacgagacctctctacatctcgtatgccgtcttctg                                    >  SRR14920197.6568316/1‑89 (MQ=60)

                                                                                                       CGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGC                                   >  SRR14920197.5789790/1‑151 (MQ=60)

                                                                                                        GCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCT                                  >  SRR14920197.8577846/1‑151 (MQ=60)

                                                                                                         CTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGActgtctcttatacacatctccgagcccacgagacctctctacatctcgtatgccgtcttctgcttgaaaaggggggggggggggggggg                                 >  SRR14920197.39261/1‑62 (MQ=60)

                                                                                                         CTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTC                                 >  SRR14920197.4185738/1‑151 (MQ=60)

                                                                                                           ATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACctgtctcttatacacatctccgagcccacgagacctctctacatctcgtatgccgtcttcagcttgaaaactcgggtggggggggggggggggggggg                               >  SRR14920197.10534846/1‑53 (MQ=60)

                                                                                                           ATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCC                               >  SRR14920197.6787401/1‑151 (MQ=60)

                                                                                                           ATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCC                               >  SRR14920197.370472/1‑151 (MQ=60)

                                                                                                              CAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATctgtctcttatacacatctccgagcccacgagacctctctacatctcgtatgccgtcttctgcttg                            >  SRR14920197.4240788/1‑85 (MQ=60)

                                                                                                                ATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCC                          <  SRR14920197.8378156/151‑1 (MQ=60)

                                                                                                                  GAAAAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGctgtctcttatacacatctccgagcccacgagacctctctacatctcgtatgccgtcttctgcttgaaaatgggggggggggggggggggggggggggggggggggg                        >  SRR14920197.9094615/1‑44 (MQ=60)

                                                                                                                     AAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGC                     <  SRR14920197.1850626/151‑1 (MQ=60)

                                                                                                                     AAGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGC                     <  SRR14920197.1848996/151‑1 (MQ=60)

                                                                                                                      GGGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCC                    <  SRR14920197.8570113/151‑1 (MQ=60)

                                                                                                                       GGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTActgtctcttatacacatctccgagcccacgagacctctctacatctcgtatgccgtcttctgcttgaaaaatgggggggggggg                   >  SRR14920197.6385273/1‑67 (MQ=60)

                                                                                                                       GGTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTActgtctcttatacacatctccgagcccacgagacctctctacatcgcgtatgccgtcttctgcttgaaaagggggggggggggg                   >  SRR14920197.3772754/1‑67 (MQ=60)

                                                                                                                        GTTCAGTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTG                  >  SRR14920197.288481/1‑151 (MQ=60)

                                                                                                                             GTTTAAACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATctgtctcttatacacatctccgagcccacgagacctctctacatcgcgtatgccgtcttctgcttgaaagggggggggggg             >  SRR14920197.10928714/1‑70 (MQ=60)

                                                                                                                                   CCTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGATATTTATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGG       <  SRR14920197.4774162/151‑1 (MQ=60)

                                                                                                                                   ACTCACTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGG       <  SRR14920197.4774510/151‑1 (MQ=60)

                                                                                                                                        CTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGT  <  SRR14920197.8326568/151‑1 (MQ=60)

                                                                                                                                        CTTATCCCGCCAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGT  <  SRR14920197.8326555/151‑1 (MQ=60)

GAGTGGCGCACGTCTTTAAACATCAACTCAGCCACAAAAAAGATATTTAATAACCTTGACAACTTATCATATATTCAGAGGACTTCTTTTCGGGGTAACGACACGCTATACAATGAAAAGGTTCAGTTTAAACTCACTTATCCCGCTAGGAATGGAAGACACAAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGT  >  NZ_CP025268/1620715‑1621001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`