Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F50 I1 R3
|
779 |
308.9 |
10220750 |
96.7% |
9883465 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP025268 |
3,743,290 |
+C |
intergenic (‑66/‑116) |
yiaJ ← / → galK |
IclR family transcriptional regulator YiaJ/galactokinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP025268 | 3,743,289 | 1 | . | C | 99.1%
| 372.3
/ ‑3.3
| 115 | intergenic (‑65/‑117) | yiaJ/galK | IclR family transcriptional regulator YiaJ/galactokinase |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (64/50); total (64/51) |
| Fisher's exact test for biased strand distribution p-value = 4.43e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.35e-01 |
Only 100 of 121 total aligned reads displayed.
ACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAACCCAGGAGGCAGATCATGAGTCTGAAAGAAAAA > NZ_CP025268/3743150‑3743423
|
aCTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATa‑a > 1:3888623/1‑140 (MQ=255)
aCTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATa‑a > 1:3803514/1‑140 (MQ=255)
ctctGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑c < 1:1412387/140‑1 (MQ=255)
tctGGCTTCCGGCTGGACGCTCTTGTTCCTGCGCCATCTCTTTCTCTTTTTTTCCCTTCACTTCTTTCCCCATTGTGTGGCGGCCTGATGGGCGCGCAAAGTTGGCCGTAGTTCACGATCTCGATGGATGATTTAGA‑A‑cc > 2:2816221/1‑139 (MQ=255)
ggCTTCCGGCTTGACGGTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCAACCCTTATTGCCCCATTTTGGCGCGTCCTGATGGTGGAGCAAAGTGTGCAGTAGGTCACGAACTAGAAAGATAAGTTATA‑A‑ctaat > 2:60688/1‑136 (MQ=255)
ccGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGAtt > 1:729003/1‑140 (MQ=255)
ccGGCTGGACGCTCTGTTTCCTGCGCCGTCTCGTTCTGTTTTTCTCCCGTGACTTCTTTACCCATTTTGTCGCGTCCTGATGGGAGCGCAAAGGGTGCCGTAGGTCACGCTCCTGGCAGATAATTGAGA‑ACCAATTGagt > 2:3174960/1‑138 (MQ=255)
cGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGAttt > 1:1053564/1‑140 (MQ=255)
tGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTAt < 1:4693082/140‑1 (MQ=255)
ggACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATg > 2:1492761/1‑140 (MQ=255)
ttttCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGaa < 1:3381819/140‑1 (MQ=255)
ttttCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGaa < 2:4604877/140‑1 (MQ=255)
tCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAAtt < 1:2994157/140‑1 (MQ=255)
tGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATtcat < 1:458177/140‑1 (MQ=255)
gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATtcatc > 1:1673632/1‑140 (MQ=255)
gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATtcatc < 2:258294/140‑1 (MQ=255)
gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATtcatc > 1:4277869/1‑140 (MQ=255)
gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATtcatc > 2:4477226/1‑140 (MQ=255)
gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATtcatc < 1:679228/140‑1 (MQ=255)
tctcGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCag > 1:2955368‑M1/1‑138 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:1263929‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:3474799‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:4010759‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:2376907‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:3786616‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:4278471‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:1325138‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:1897379‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCAATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:2004775‑M1/140‑9 (MQ=255)
ctctTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcct < 1:1155665‑M1/140‑10 (MQ=255)
ctctTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcct < 1:2441791‑M1/140‑10 (MQ=255)
ttttttCCCATCACTTCTTTCACCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgtt < 2:2027612‑M1/140‑14 (MQ=255)
cccATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaag < 2:4626246‑M1/140‑20 (MQ=255)
ccATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagt < 1:1973658‑M1/140‑21 (MQ=255)
aTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTTATTTTTATGTCTTTTGAAATTCATCAATGagattgccttgttaaaaagtga > 2:481916‑M1/1‑118 (MQ=255)
aTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtga < 2:243805‑M1/140‑23 (MQ=255)
aTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtga > 1:4998032‑M1/1‑118 (MQ=255)
tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATACC‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 1:1137701‑M1/140‑24 (MQ=255)
tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 2:2391483‑M1/140‑24 (MQ=255)
tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 1:1723183‑M1/140‑24 (MQ=255)
tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 1:2955731‑M1/140‑24 (MQ=255)
tttCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatata > 2:3652474‑M1/1‑110 (MQ=255)
cccATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg > 2:596007‑M1/1‑106 (MQ=255)
cccATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg < 1:4941367‑M1/140‑35 (MQ=255)
cccATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg > 2:595504‑M1/1‑106 (MQ=255)
cccATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGGTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTCTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg < 1:4150417‑M1/140‑35 (MQ=255)
aTTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaa > 1:573562‑M1/1‑103 (MQ=255)
ttttGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaat < 1:1114045‑M1/140‑39 (MQ=255)
tttGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatc > 1:3656283‑M1/1‑101 (MQ=255)
cTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcat > 2:1393131‑M1/1‑90 (MQ=255)
tGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattg < 1:4810570‑M1/140‑55 (MQ=255)
tAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaa > 1:191651‑M1/1‑83 (MQ=255)
aGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaat > 2:2758963‑M1/1‑82 (MQ=255)
aGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATCTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaat > 1:1228904‑M1/1‑82 (MQ=255)
gcgcAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatt > 1:4263155‑M1/1‑81 (MQ=255)
cAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatttta < 1:1216273‑M1/140‑63 (MQ=255)
aaaagTGTGCCGTAGTTCACGATCTCGACAGATAATTTAGA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatttta < 1:3830795‑M1/139‑63 (MQ=255)
aaaGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaa > 1:1963141‑M1/1‑77 (MQ=255)
aGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagc > 1:1524699‑M1/1‑75 (MQ=255)
tgCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCACTTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaa > 2:1830733‑M1/1‑71 (MQ=255)
tgCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGAGTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaa > 2:1515215‑M1/1‑71 (MQ=255)
aGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcg < 2:1853022‑M1/140‑76 (MQ=255)
gTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcga > 2:641213‑M1/1‑64 (MQ=255)
ttCACGATCTCGCCAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatgttaagccaaaaaagcgat > 2:1446434‑M1/1‑63 (MQ=255)
ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 1:4485326‑M1/1‑63 (MQ=255)
ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 2:2877732‑M1/1‑63 (MQ=255)
ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 2:4481505‑M1/1‑63 (MQ=255)
ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 2:2763296‑M1/1‑63 (MQ=255)
ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 1:3588671‑M1/1‑63 (MQ=255)
ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 1:4026836‑M1/1‑63 (MQ=255)
ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 1:2387545‑M1/1‑63 (MQ=255)
ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 1:512802‑M1/1‑63 (MQ=255)
ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 2:1446433‑M1/1‑63 (MQ=255)
cACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatca > 1:3416601‑M1/1‑61 (MQ=255)
aCGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaa < 1:1501898‑M1/140‑81 (MQ=255)
aCGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaa < 2:1301333‑M1/140‑81 (MQ=255)
aCGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaa < 2:1301755‑M1/140‑81 (MQ=255)
cGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaa > 2:4761011‑M1/1‑59 (MQ=255)
tctcGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaa > 1:2241057‑M1/1‑56 (MQ=255)
cGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttagaaagtgatcgatatatttgaaatcaagtttcgcatatggaaattttaagccaaaaaagcgatcaaaaaaaca > 2:4532541‑M1/1‑53 (MQ=255)
cGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca > 2:4104634‑M1/1‑53 (MQ=255)
cGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca > 1:1087328‑M1/1‑53 (MQ=255)
cGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca > 1:214759‑M1/1‑53 (MQ=255)
cGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca > 2:4906653‑M1/1‑53 (MQ=255)
cGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca > 1:4626807‑M1/1‑53 (MQ=255)
cGACAGATAATTTATA‑ACCAATTGATTTTTAGGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagctatcaaaaaaaca > 2:3882901‑M1/1‑53 (MQ=255)
cGACAGATAATTTATA‑ACCAATTGATTTTTAAGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca > 2:3882913‑M1/1‑53 (MQ=255)
aCAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 1:3349513‑M1/140‑90 (MQ=255)
aCAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 1:190319‑M1/140‑90 (MQ=255)
aCAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 2:1769017‑M1/140‑90 (MQ=255)
aCAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 1:1485261‑M1/140‑90 (MQ=255)
aCAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgacatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 2:1622259‑M1/140‑90 (MQ=255)
aCAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccctgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 1:4076022‑M1/140‑90 (MQ=255)
aGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaagga < 1:232404‑M1/140‑92 (MQ=255)
gATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgataaaaaaaacaaggaa > 1:4613418‑M1/1‑48 (MQ=255)
aTAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaag > 1:3338567‑M1/1‑47 (MQ=255)
aaTTTATA‑ACCAATTGATTTGTATGTCTTTTGACATTCATCAATCagattgccttgttaaaaagtgatcgatatattagaaatcaaggttcgcatattgaaattgtaagccaaaccagcgatcaaaaaaacaaggaagcc < 2:4213836‑M1/140‑96 (MQ=255)
aTTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcct > 1:1309496‑M1/1‑44 (MQ=255)
aTTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcct > 1:1308622‑M1/1‑44 (MQ=255)
tata‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgagattttaagccaaaaaagcgatcaaaaaaacaaggaagcctggg < 1:2989633‑M1/140‑100 (MQ=255)
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ACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAACCCAGGAGGCAGATCATGAGTCTGAAAGAAAAA > NZ_CP025268/3743150‑3743423
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAACCCA > NZ_CP025268/3743140‑3743394
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CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑C < SRR14920166.2316665/151‑1 (MQ=60)
CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑C < SRR14920166.378218/151‑1 (MQ=60)
CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑C < SRR14920166.1814637/151‑1 (MQ=60)
gctcAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCCTTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CC < SRR14920166.54412/147‑1 (MQ=60)
GCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CC < SRR14920166.3459344/151‑1 (MQ=60)
GCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CC < SRR14920166.676809/151‑1 (MQ=60)
GCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTATTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGCTAATTTATA‑A‑CC < SRR14920166.4084871/151‑1 (MQ=60)
AAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAAT > SRR14920166.4173879/1‑151 (MQ=60)
GACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATT > SRR14920166.730635/1‑151 (MQ=60)
GACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATT > SRR14920166.244395/1‑151 (MQ=60)
GACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATT < SRR14920166.2359768/151‑1 (MQ=60)
ACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTT > SRR14920166.1055770/1‑151 (MQ=60)
CTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTT < SRR14920166.1415249/151‑1 (MQ=60)
CTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTC > SRR14920166.1184435/1‑151 (MQ=60)
CGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTT > SRR14920166.4955346/1‑151 (MQ=60)
TGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAA < SRR14920166.4703361/151‑1 (MQ=60)
CTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATC > SRR14920166.1677049/1‑151 (MQ=60)
CTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATC > SRR14920166.4287251/1‑151 (MQ=60)
CTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAA > SRR14920166.3989100/1‑151 (MQ=60)
TTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920166.3389023/151‑1 (MQ=60)
TTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCag > SRR14920166.2961650/1‑149 (MQ=60)
TCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCaga < SRR14920166.3000504/151‑4 (MQ=60)
TGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattg < SRR14920166.459239/151‑7 (MQ=60)
GCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgc < SRR14920166.680764/151‑8 (MQ=60)
CTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgtta > SRR14920166.1437597/1‑137 (MQ=60)
GTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaa > SRR14920166.4614656/1‑134 (MQ=60)
TCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaag < SRR14920166.3482136/151‑20 (MQ=60)
TCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaag < SRR14920166.4019541/151‑20 (MQ=60)
TCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaag < SRR14920166.2381737/151‑20 (MQ=60)
TCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaag < SRR14920166.4287853/151‑20 (MQ=60)
CTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagt < SRR14920166.2446758/151‑21 (MQ=60)
CTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagc < SRR14920166.1158074/151‑21 (MQ=60)
CTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtga > SRR14920166.5008726/1‑129 (MQ=60)
TCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatat > SRR14920166.2190152/1‑122 (MQ=60)
CCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatat < SRR14920166.1977796/151‑32 (MQ=60)
TCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATACC‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg < SRR14920166.1140080/151‑35 (MQ=60)
TCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg < SRR14920166.3329453/151‑35 (MQ=60)
TCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg < SRR14920166.2962015/151‑35 (MQ=60)
TCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg < SRR14920166.1726685/151‑35 (MQ=60)
CTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaa > SRR14920166.574872/1‑114 (MQ=60)
TCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatc > SRR14920166.3664106/1‑112 (MQ=60)
CCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagttt < SRR14920166.4951971/151‑46 (MQ=60)
CCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGGTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTCTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagttt < SRR14920166.4159502/151‑46 (MQ=60)
TTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgca < SRR14920166.1116379/151‑50 (MQ=60)
CGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaa > SRR14920166.192129/1‑94 (MQ=60)
GTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATCTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaat > SRR14920166.1231417/1‑93 (MQ=60)
TCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatt > SRR14920166.4272510/1‑92 (MQ=60)
TATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaa > SRR14920166.1967215/1‑88 (MQ=60)
TGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagc < SRR14920166.4820993/151‑66 (MQ=60)
TGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagc > SRR14920166.1527802/1‑86 (MQ=60)
GCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaa > SRR14920166.356105/1‑81 (MQ=60)
CAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920166.1218769/78‑1 (MQ=60)
CAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920166.1758557/78‑1 (MQ=60)
AAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAGA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920166.3839162/78‑1 (MQ=60)
GTGTGCGGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.3596184/1‑74 (MQ=60)
GTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.513962/1‑74 (MQ=60)
GTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.4035636/1‑74 (MQ=60)
GTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.4495153/1‑74 (MQ=60)
GTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.2392393/1‑74 (MQ=60)
GTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.3423849/1‑72 (MQ=60)
GTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.2245642/1‑67 (MQ=60)
GTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.4636980/1‑64 (MQ=60)
GTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.1089584/1‑64 (MQ=60)
GTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.215293/1‑64 (MQ=60)
ACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920166.1504951/60‑1 (MQ=60)
CGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.4623564/1‑59 (MQ=60)
GATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.3345699/1‑58 (MQ=60)
CTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.1312132/1‑55 (MQ=60)
CTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.1311258/1‑55 (MQ=60)
ACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920166.4084930/51‑1 (MQ=60)
ACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920166.1488275/51‑1 (MQ=60)
ACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920166.190794/51‑1 (MQ=60)
ACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920166.3356659/51‑1 (MQ=60)
AGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920166.232971/49‑1 (MQ=60)
ATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.1810923/1‑44 (MQ=60)
ATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.3672229/1‑44 (MQ=60)
ATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.4963752/1‑44 (MQ=60)
TATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920166.2995974/41‑1 (MQ=60)
ATA‑ACCAATTGATCTTTATGTCTTTTGAAATTCATCAATC < SRR14920166.4487037/40‑1 (MQ=54)
A‑C‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.3319021/1‑37 (MQ=60)
C‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.1363887/1‑36 (MQ=60)
CAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920166.182675/1‑35 (MQ=60)
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CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAACCCA > NZ_CP025268/3743140‑3743394
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
