Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F50 I1 R2
|
870 |
341.9 |
11209456 |
97.2% |
10895591 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP025268 |
3,743,290 |
+C |
intergenic (‑66/‑116) |
yiaJ ← / → galK |
IclR family transcriptional regulator YiaJ/galactokinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP025268 | 3,743,289 | 1 | . | C | 96.0%
| 391.2
/ 8.7
| 125 | intergenic (‑65/‑117) | yiaJ/galK | IclR family transcriptional regulator YiaJ/galactokinase |
| Reads supporting (aligned to +/- strand): ref base . (1/4); new base C (65/55); total (66/59) |
| Fisher's exact test for biased strand distribution p-value = 1.88e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 129 total aligned reads displayed.
TCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAACCCAGGAGGCAGATCATGAGTCTGAAAGAA > NZ_CP025268/3743152‑3743420
|
tctGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGAGAGATAATTTATA‑A‑cc > 1:5296452/1‑139 (MQ=255)
tctGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑cc > 1:2593072/1‑139 (MQ=255)
ggCTTCCTGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑ccaat < 2:5594513/140‑5 (MQ=255)
ggCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGGTCTCTTTTTTTCCCATCCCTTCTTTCCCCCTTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCCCGATCTCGACAGATAATTTATC‑A‑ccaat > 2:2951425/1‑136 (MQ=255)
ccGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGAtt > 2:1073472/1‑140 (MQ=255)
cGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGAttt > 2:5145946/1‑140 (MQ=255)
tGGACGCTCTTTTTCCTGCTCCATCTCGTTCTATTTTTTCCCCATCACCTCTTTCCCCATTCTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGCTCTCGACTGATAATTTCTA‑ACCAATTGATTTTTAt < 2:1170335/140‑1 (MQ=255)
ggACGCTCTTTTTCCTTCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATg > 1:4898651/1‑140 (MQ=255)
ttttCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGaa < 1:5604670/140‑1 (MQ=255)
ttttCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGaa < 1:4281791/140‑1 (MQ=255)
ttgtCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGaa < 1:28386/137‑1 (MQ=255)
gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATtcatc > 2:5058710/1‑140 (MQ=255)
gcgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATtcatc > 1:2797776/1‑140 (MQ=255)
cgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATtcatca < 1:1920328/140‑1 (MQ=255)
cgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATtcatca > 2:3456817/1‑140 (MQ=255)
cgcCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATtcatca < 1:4064278/140‑1 (MQ=255)
tctcGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCag > 1:3025118‑M1/1‑138 (MQ=255)
ttCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgc > 1:4571486‑M1/1‑133 (MQ=255)
ttCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgc > 2:472393‑M1/1‑133 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCCATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:5026918‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:4152177‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:4558034‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:2571572‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:5237483‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 1:1996917‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:3060853‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:3061127‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:1806417‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:4787470‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:4897248‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < 2:5315727‑M1/140‑9 (MQ=255)
tctcTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAGA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATAAATCagattgcc < 1:1780237‑M1/140‑9 (MQ=255)
tctcTTTTTTTCACATCGCTTCTTGCCCCATTTTGTCGCGTCCTGCTGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAAGTTATAGC‑CAATTGATTTTTATGTCTTTTGAAATTAATCAATCagattgcc < 2:4756395‑M1/140‑9 (MQ=255)
tttttttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgt > 1:45422‑M1/1‑128 (MQ=255)
tttttttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgt > 2:2639960‑M1/1‑128 (MQ=255)
tttttttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgt < 1:5145946‑M1/140‑13 (MQ=255)
tttCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaa < 1:5156644‑M1/140‑17 (MQ=255)
tgccatCACTTCTTTCCCCATTTTGTCGCGTCCTGATGATAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattcccttgttaaaaa < 2:5521003‑M1/138‑19 (MQ=255)
cATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtg < 2:2797776‑M1/140‑22 (MQ=255)
aTCACTTCTTTCCCCATTTTGTCGCGTCCTGCTGGTAGCGCCAAGTGTGCCGTAGTTCACGCGCTCGACAGATAATTGATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCGTCAATCaaattgccttgttaaaaagtga > 2:446964‑M1/1‑118 (MQ=255)
aTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtga > 1:735724‑M1/1‑118 (MQ=255)
aTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtga > 1:1461514‑M1/1‑118 (MQ=255)
aTCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtga > 2:5268692‑M1/1‑118 (MQ=255)
tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgct < 1:3654368‑M1/140‑24 (MQ=255)
tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 2:2593072‑M1/140‑24 (MQ=255)
tCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < 1:478142‑M1/140‑24 (MQ=255)
ttcttTCCCCATGTTGACGCGTCCTCATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATATC‑CATTTGATTTTGGTGTCTGTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgat < 2:4332193‑M1/140‑28 (MQ=255)
tCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAATTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatt > 1:212872‑M1/1‑108 (MQ=255)
tCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatt > 2:4020126‑M1/1‑108 (MQ=255)
tCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatt > 2:783852‑M1/1‑108 (MQ=255)
tCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatt > 1:2563708‑M1/1‑108 (MQ=255)
tCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTCTGCCGTAGTTCACGATCGCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaattgatcgatatatt > 2:4846257‑M1/1‑108 (MQ=255)
tttGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatc < 2:3263497‑M1/140‑40 (MQ=255)
tCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc > 1:3915693‑M1/1‑92 (MQ=255)
tCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc > 1:3180714‑M1/1‑92 (MQ=255)
tCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc > 1:3180505‑M1/1‑92 (MQ=255)
tCCTGATGGTAGCGCAAAGGGTGCCGTAGTTCACGATCTCGACAGATAATTTATACC‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCagatttccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc > 1:3218374‑M1/1‑92 (MQ=255)
ccTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGCTCTCGACAGTTAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAATTTCGTCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcacgtttcgca < 2:3355400‑M1/140‑50 (MQ=255)
ggTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattga < 1:5010842‑M1/140‑56 (MQ=255)
aGCGCAAAGTGTTCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaat > 2:5520827‑M1/1‑82 (MQ=255)
aGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaat > 1:2180657‑M1/1‑82 (MQ=255)
cAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaatttta < 1:1073472‑M1/140‑63 (MQ=255)
aaGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTGTTAGGTCTTTTGAAATGCATCAATCagattgccttgtaaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaag > 2:4329586‑M1/1‑76 (MQ=255)
aGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagc > 2:2948445‑M1/1‑75 (MQ=255)
aGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagc > 2:2948524‑M1/1‑75 (MQ=255)
ggtgcCGTAGTTCACTATCTCGTCAGGTAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagagtgccttgtgaaaaattgaactatatatttgaaatcaagtttcgtatatggaaattttaagtca > 2:1738135‑M1/2‑73 (MQ=255)
gCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaa > 2:2084349‑M1/1‑70 (MQ=255)
gCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaa > 2:1052734‑M1/1‑70 (MQ=255)
ccGTAGTTCACGCTCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaa > 2:5522364‑M1/1‑69 (MQ=255)
aGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcg > 2:2728703‑M1/1‑65 (MQ=255)
aGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcg > 2:5349125‑M1/1‑65 (MQ=255)
aGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttggtaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcg > 2:2728702‑M1/1‑65 (MQ=255)
ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatttatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 2:4477860‑M1/1‑63 (MQ=255)
ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 1:3455420‑M1/1‑63 (MQ=255)
ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 1:3596263‑M1/1‑63 (MQ=255)
ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 2:2190448‑M1/1‑63 (MQ=255)
ttCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgat > 1:3923522‑M1/1‑63 (MQ=255)
cACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatca < 1:5268692‑M1/140‑80 (MQ=255)
cACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatca > 1:722598‑M1/1‑61 (MQ=255)
cGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaa > 2:67850‑M1/1‑59 (MQ=255)
cGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaa > 1:585970‑M1/1‑59 (MQ=255)
gATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaa > 1:4191487‑M1/1‑58 (MQ=255)
gATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaa > 1:2304648‑M1/1‑58 (MQ=255)
aTCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaa < 1:2189295‑M1/140‑84 (MQ=255)
cGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca > 2:2671481‑M1/1‑53 (MQ=255)
cGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca > 2:5334767‑M1/1‑53 (MQ=255)
cGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAACTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaaca > 2:5104479‑M1/1‑53 (MQ=255)
aCAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 1:1321159‑M1/140‑90 (MQ=255)
aCAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 1:2992556‑M1/140‑90 (MQ=255)
aCAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 1:4751268‑M1/140‑90 (MQ=255)
aCAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaag < 1:1448632‑M1/140‑90 (MQ=255)
cAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatctgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaagg < 2:1613586‑M1/140‑91 (MQ=255)
aagATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatgttgaaattttaagccaaaaaagcgatcaaaaaaacaagg < 2:1614675‑M1/139‑91 (MQ=255)
aGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaagga < 2:4288280‑M1/140‑92 (MQ=255)
aGATAATGTATA‑ACCAACTTATCTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtgtcgcatattgaaattttaagccaaaaacgcgatcaaaaaaacaagga < 2:4383875‑M1/140‑92 (MQ=255)
aaTTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcc < 2:3488478‑M1/140‑96 (MQ=255)
aaTTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcc < 1:2639960‑M1/140‑96 (MQ=255)
aTTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcct > 1:3623412‑M1/1‑44 (MQ=255)
aTTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcct < 2:2674965‑M1/140‑97 (MQ=255)
aTTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacaaggaagcct < 1:3849629‑M1/140‑97 (MQ=255)
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TCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAACCCAGGAGGCAGATCATGAGTCTGAAAGAA > NZ_CP025268/3743152‑3743420
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAA > NZ_CP025268/3743140‑3743390
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CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑C < SRR14920167.1374740/151‑1 (MQ=60)
CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑C < SRR14920167.5156086/151‑1 (MQ=60)
CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑C < SRR14920167.4366921/151‑1 (MQ=60)
CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑C < SRR14920167.4440649/151‑1 (MQ=60)
CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑C < SRR14920167.2063466/151‑1 (MQ=60)
CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑C < SRR14920167.1788052/151‑1 (MQ=60)
GCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGAGAGATAATTTATA‑A‑CC > SRR14920167.5308434/1‑151 (MQ=60)
GCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CC < SRR14920167.618294/151‑1 (MQ=60)
GCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CC > SRR14920167.2598411/1‑151 (MQ=60)
GCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CC < SRR14920167.5204666/151‑1 (MQ=60)
GCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CC < SRR14920167.5204933/151‑1 (MQ=60)
GCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTCTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CC < SRR14920167.4280079/151‑1 (MQ=60)
GACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATT > SRR14920167.3035120/1‑151 (MQ=60)
GGCTTCCGGCTGGACGCTCTTTTTCCTTCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATG > SRR14920167.4909773/1‑151 (MQ=60)
CTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATC > SRR14920167.2803550/1‑151 (MQ=60)
CTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATC > SRR14920167.2085248/1‑151 (MQ=60)
CTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTGATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATC > SRR14920167.5524742/1‑151 (MQ=60)
TTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920167.4291370/151‑1 (MQ=60)
TTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920167.5617103/151‑1 (MQ=60)
TTGTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920167.28486/151‑1 (MQ=60)
TTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCag > SRR14920167.3031360/1‑149 (MQ=60)
CCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagat < SRR14920167.4029547/151‑5 (MQ=60)
GCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgc > SRR14920167.4581761/1‑144 (MQ=60)
CGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < SRR14920167.4073092/151‑9 (MQ=60)
CGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgcc < SRR14920167.1924280/151‑9 (MQ=60)
ATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgt > SRR14920167.45563/1‑139 (MQ=60)
TCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCCATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaag < SRR14920167.5038431/151‑20 (MQ=60)
TCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaag < SRR14920167.2001068/151‑20 (MQ=60)
TCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaag < SRR14920167.4161449/151‑20 (MQ=60)
TCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaag < SRR14920167.5249385/151‑20 (MQ=60)
TCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaag < SRR14920167.1783869/151‑20 (MQ=60)
TCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaag < SRR14920167.4568275/151‑20 (MQ=60)
TCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTAGA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATaaatcagattgccttgttaaaaag < SRR14920167.1783901/151‑25 (MQ=60)
CTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtga > SRR14920167.1464483/1‑129 (MQ=60)
CTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtga > SRR14920167.4297864/1‑129 (MQ=60)
CTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtga > SRR14920167.737379/1‑129 (MQ=60)
CTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtga > SRR14920167.4995629/1‑129 (MQ=60)
TTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgat < SRR14920167.5157696/151‑24 (MQ=60)
TTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgat < SRR14920167.5168411/151‑28 (MQ=60)
TTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgat < SRR14920167.5168438/151‑28 (MQ=60)
CATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAATTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatt > SRR14920167.213407/1‑119 (MQ=60)
CATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatt > SRR14920167.3666683/1‑119 (MQ=60)
CATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatt > SRR14920167.830867/1‑119 (MQ=60)
CATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatt > SRR14920167.2568992/1‑119 (MQ=60)
TCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgctcgatatatttg < SRR14920167.3662304/151‑35 (MQ=60)
TCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg < SRR14920167.479260/151‑35 (MQ=60)
TCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttg > SRR14920167.3407588/1‑117 (MQ=60)
ATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc > SRR14920167.3924034/1‑103 (MQ=60)
ATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc > SRR14920167.3187423/1‑103 (MQ=60)
ATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc > SRR14920167.3187632/1‑103 (MQ=60)
ATTTTGTCGCGTCCTGATGGTAGCGCAAAGGGTGCCGTAGTTCACGATCTCGACAGATAATTTATACC‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCagatttccttgttaaaaagtgatcgatatatttgaaatcaagtttcgc > SRR14920167.3225359/1‑103 (MQ=60)
GTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaat > SRR14920167.2185297/1‑93 (MQ=60)
GTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaat > SRR14920167.2455195/1‑93 (MQ=60)
GGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATCagattgccttgttaaaaagtgatcgatatatttgaaatcaagtttcgcatattgaaattttaagcc < SRR14920167.5022337/151‑67 (MQ=60)
CAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920167.1075656/78‑1 (MQ=60)
GTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.3931879/1‑74 (MQ=60)
GTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.3604123/1‑74 (MQ=60)
GTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.3463066/1‑74 (MQ=60)
GTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.724240/1‑72 (MQ=60)
GCCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.587305/1‑70 (MQ=60)
CCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.2309492/1‑69 (MQ=60)
CCGTAGTTCACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.4200818/1‑69 (MQ=60)
CACGATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920167.5280643/61‑1 (MQ=60)
ATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920167.2193945/57‑1 (MQ=60)
ATCTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920167.2709203/57‑1 (MQ=60)
CTCGACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.3631302/1‑55 (MQ=60)
ACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920167.2998723/51‑1 (MQ=60)
ACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920167.4761926/51‑1 (MQ=60)
ACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920167.1451538/51‑1 (MQ=60)
ACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920167.4762016/51‑1 (MQ=60)
ACAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920167.1323850/51‑1 (MQ=60)
CAGATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.3838869/1‑50 (MQ=60)
GATAATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.4674565/1‑48 (MQ=60)
AATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920167.2645393/45‑1 (MQ=60)
AATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.4226104/1‑45 (MQ=60)
ATTTATA‑ACCAATTGATTTTTATGTCTTTTGACATTCATCAATC > SRR14920167.4272040/1‑44 (MQ=57)
ATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.1170621/1‑44 (MQ=60)
ATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC < SRR14920167.3857864/44‑1 (MQ=60)
ATTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.1232040/1‑44 (MQ=60)
TTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.580040/1‑43 (MQ=60)
TTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.647159/1‑43 (MQ=60)
TTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.1411407/1‑43 (MQ=60)
TTTATA‑ACCAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.888681/1‑43 (MQ=60)
CAATTGATTTTTATGTCTTTTGAAATTCATCAATC > SRR14920167.3064018/1‑35 (MQ=60)
CAATTGATTTTTATGTCTTTTGAAATTAATCAATC < SRR14920167.371540/35‑1 (MQ=59)
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CGCGAAACAGACTCTGGCTTCCGGCTGGACGCTCTTTTTCCTGCGCCATCTCGTTCTCTTTTTTTCCCATCACTTCTTTCCCCATTTTGTCGCGTCCTGATGGTAGCGCAAAGTGTGCCGTAGTTCACGATCTCGACAGATAATTTATA‑A‑CAATTGATTTTTATGTCTTTTGAAATTCATCAATCCTGTTGACAATTAATCATCGGCATAGTATATCGGCATAGTATAATACGACAAGGTGAGGAACTAAA > NZ_CP025268/3743140‑3743390
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
