Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
145 |
28.3 |
2389566 |
89.0% |
2126713 |
107.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260479 |
3,905,524 |
G→C |
A1285G (GCC→GGC) |
putA ← |
bifunctional proline dehydrogenase and proline oxidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260479 | 3,905,524 | 0 | G | C | 100.0%
| 178.9
/ NA
| 46 | A1285G (GCC→GGC) | putA | bifunctional proline dehydrogenase and proline oxidase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (20/26); total (20/26) |
GAGGGTTGCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGGCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGT > AM260479/3905402‑3905641
|
gAGGGTTGCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCg < 1:816205/134‑1 (MQ=255)
cAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGAcc > 2:331267/1‑134 (MQ=255)
ccGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCggg < 1:520413/134‑1 (MQ=255)
gATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGgc > 1:134575/1‑134 (MQ=255)
tcatcaAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCAcc > 2:102133/1‑134 (MQ=255)
tcatcaAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCAcc > 2:264164/1‑134 (MQ=255)
catcaAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCg > 2:1063386/1‑134 (MQ=255)
atcaAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc < 2:882653/134‑1 (MQ=255)
atcaAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc < 2:314345/134‑1 (MQ=255)
atcaAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc < 2:6247/134‑1 (MQ=255)
atcaAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc < 2:725736/134‑1 (MQ=255)
aaaCTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCAc > 2:416470/1‑134 (MQ=255)
gcccgcGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCg < 2:134575/134‑1 (MQ=255)
cTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGc < 1:1103053/134‑1 (MQ=255)
aCCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc < 1:102133/134‑1 (MQ=255)
aCCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc < 1:264164/134‑1 (MQ=255)
aCCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc < 1:416470/134‑1 (MQ=255)
ccGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc > 1:251064/1‑133 (MQ=255)
ccGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc < 2:1178313/133‑1 (MQ=255)
ccGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc < 2:251064/133‑1 (MQ=255)
ccGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc > 1:1178313/1‑133 (MQ=255)
aaaGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc < 2:1839/130‑1 (MQ=255)
aaaGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc > 1:1839/1‑130 (MQ=255)
cgcgcTCGATCAGCAAACGGTCGAGCGCGATATTCGGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc > 1:603027/2‑125 (MQ=255)
cgcgcTCGATCAGCAAACGGTCGAGCGCGATATTCGGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc < 2:603027/124‑1 (MQ=255)
cTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc < 1:1015593/84‑1 (MQ=255)
cTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc > 2:1015593/1‑84 (MQ=255)
aTCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCacac > 1:571901/1‑95 (MQ=255)
aTCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCacac < 2:571901/95‑1 (MQ=255)
aTCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCg > 1:1166032/1‑133 (MQ=255)
atatTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCcgccgc < 1:1063386/134‑1 (MQ=255)
c‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc < 1:549838/54‑1 (MQ=255)
c‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc > 2:549838/1‑54 (MQ=255)
c‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCg > 1:978138/1‑64 (MQ=255)
c‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCg < 2:978138/64‑1 (MQ=255)
ttCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGt < 1:1014343/134‑1 (MQ=255)
ccTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc > 2:464278/1‑83 (MQ=255)
ccTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc < 1:464278/83‑1 (MQ=255)
ttGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc > 1:755008/1‑81 (MQ=255)
ttGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc < 2:755008/81‑1 (MQ=255)
tGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCa < 1:152628/46‑1 (MQ=255)
tGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCa > 2:152628/1‑46 (MQ=255)
tGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTgc > 2:41746/1‑64 (MQ=255)
tGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTgc < 1:41746/64‑1 (MQ=255)
cgcCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc > 1:25730/1‑78 (MQ=255)
cgcCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc < 2:25730/78‑1 (MQ=255)
|
GAGGGTTGCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGGCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGT > AM260479/3905402‑3905641
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGAGGGTTGCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGGCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGTCGGCCACCATGCGGACGCGCGATTG > AM260479/3905401‑3905666
|
CGAGGGTTGCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGG < GWNJ‑0478:712:GW2002102894th:2:2112:12824:22715/150‑1 (MQ=60)
AGGGTTGCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCG > GWNJ‑0478:712:GW2002102894th:2:1108:16253:93316/1‑150 (MQ=60)
GCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTG < GWNJ‑0478:712:GW2002102894th:2:1212:6930:33824/150‑1 (MQ=60)
gtgtctcgtgggctcggagatgtgtataagagacagGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACAC < GWNJ‑0478:712:GW2002102894th:2:2207:20617:10850/114‑1 (MQ=60)
caagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACAC < GWNJ‑0478:712:GW2002102894th:2:1215:17310:68953/85‑1 (MQ=60)
CATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCctgtctcttatacacatctccgagcccacgagacactcg > GWNJ‑0478:712:GW2002102894th:2:2205:19199:26957/1‑111 (MQ=60)
tttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCG < GWNJ‑0478:712:GW2002102894th:2:1109:12729:89727/77‑1 (MQ=60)
acggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAT < GWNJ‑0478:712:GW2002102894th:2:1105:3721:54695/95‑1 (MQ=60)
CGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTC > GWNJ‑0478:712:GW2002102894th:2:2216:19235:24383/1‑150 (MQ=60)
CGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTC > GWNJ‑0478:712:GW2002102894th:2:1115:11007:81123/1‑150 (MQ=60)
GCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCG < GWNJ‑0478:712:GW2002102894th:2:2212:18868:68338/150‑1 (MQ=60)
CTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGT > GWNJ‑0478:712:GW2002102894th:2:1101:6096:13554/1‑150 (MQ=60)
aggtgaaccgaatatcGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGC > GWNJ‑0478:712:GW2002102894th:2:2101:4419:24191/17‑150 (MQ=60)
agtgtctcgtgggctcggagatgtgtataagagacagGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCAC < GWNJ‑0478:712:GW2002102894th:2:1211:5554:57235/113‑1 (MQ=60)
GACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCAC < GWNJ‑0478:712:GW2002102894th:2:1208:6255:9964/150‑1 (MQ=60)
GACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCAC < GWNJ‑0478:712:GW2002102894th:2:1114:13715:44355/150‑1 (MQ=60)
GACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCAC < GWNJ‑0478:712:GW2002102894th:2:1106:17168:12106/150‑1 (MQ=60)
GAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCctgtctcttatacacatctccgagc > GWNJ‑0478:712:GW2002102894th:2:1214:4060:70481/1‑125 (MQ=60)
GAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGC > GWNJ‑0478:712:GW2002102894th:2:2215:8896:68662/1‑149 (MQ=60)
GTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgt > GWNJ‑0478:712:GW2002102894th:2:2209:17208:4322/1‑94 (MQ=60)
GATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCtgtctcttatacacatctccgagcccacgagacactcg > GWNJ‑0478:712:GW2002102894th:2:2111:10924:8154/1‑112 (MQ=60)
GATATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGTCGGCCAC < GWNJ‑0478:712:GW2002102894th:2:2211:4997:67160/150‑1 (MQ=60)
ATTC‑GGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCtgtctcttatacacatctccgagcccacgagacactcgct > GWNJ‑0478:712:GW2002102894th:2:1103:5989:60694/1‑109 (MQ=60)
GTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGTCGGCCACCATGCGGA < GWNJ‑0478:712:GW2002102894th:2:2207:21104:3645/150‑1 (MQ=60)
CGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGTCGGCCACCATGCGGACGCGCGATTG > GWNJ‑0478:712:GW2002102894th:2:1101:13104:17547/1‑150 (MQ=60)
|
CGAGGGTTGCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTC‑GGTTCACCTTGCGCCAGGGCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGTCGGCCACCATGCGGACGCGCGATTG > AM260479/3905401‑3905666
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
