Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
152 |
24.9 |
2083062 |
91.6% |
1908084 |
109.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260480 |
1,636,494 |
+T |
intergenic (‑100/‑189) |
h16_B1459 ← / → h16_B1460 |
response regulator containing sigma54 activator and Fis‑type DNA‑binding domains/MFS transporter, OFA family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260480 | 1,636,494 | 1 | . | T | 95.2%
| 150.5
/ 0.1
| 42 | intergenic (‑100/‑189) | h16_B1459/h16_B1460 | response regulator containing sigma54 activator and Fis‑type DNA‑binding domains/MFS transporter, OFA family |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base T (20/20); total (21/21) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.85e-01 |
ATCGGGCGGGTTGCTTTGTCTTTCGCTCATCACTTTAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTG‑GCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTTGGGCATGGCTTTTGCTGA > AM260480/1636365‑1636613
|
aTCGGGCGGGTTGCTTTGTCTTTCGCTCATCACTTTAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTgtgcc > 1:588764/1‑130 (MQ=255)
tGTCTTTCGCTCATCACTTTAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTG‑GCCCGGGCAACg > 1:170519/1‑126 (MQ=255)
tGTCTTTCGCTCATCACTTTAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTG‑GCCCGGGCAACg < 2:170519/126‑1 (MQ=255)
cTTTAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACgg < 1:235950/112‑1 (MQ=255)
cTTTAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACgg > 2:235950/1‑112 (MQ=255)
cGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGa > 1:535173/1‑113 (MQ=255)
cGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGa < 2:535173/113‑1 (MQ=255)
cGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGcc > 2:322688/1‑134 (MQ=255)
ggCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCaa < 2:179412/122‑1 (MQ=255)
ggCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCaa > 1:179412/1‑122 (MQ=255)
ggCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCg > 1:317043/1‑134 (MQ=255)
ggCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCg > 1:901812/1‑134 (MQ=255)
gCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCgg < 2:588764/134‑1 (MQ=255)
aaGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTg > 1:157084/1‑80 (MQ=255)
aaGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTg < 2:157084/80‑1 (MQ=255)
aaGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGgcg > 1:307902/1‑134 (MQ=255)
ggAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGgcgcgc < 2:317043/134‑1 (MQ=255)
cTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCcgc > 1:350496/1‑134 (MQ=255)
aGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGc > 2:38016/1‑129 (MQ=255)
aGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGc < 1:38016/129‑1 (MQ=255)
aGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCcgcgc > 2:401123/1‑134 (MQ=255)
cGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGa < 2:350496/134‑1 (MQ=255)
cGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGa < 1:322688/134‑1 (MQ=255)
aGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGACCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGgcgcgc < 2:540241/118‑1 (MQ=255)
aGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGACCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGgcgcgc > 1:540241/1‑118 (MQ=255)
gCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACggg < 1:663552/71‑1 (MQ=255)
gCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACggg > 2:663552/1‑71 (MQ=255)
cGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTgacg < 1:912013/134‑1 (MQ=255)
ttGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAgg < 2:307902/133‑1 (MQ=255)
gggAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGAt > 2:872460/1‑134 (MQ=255)
ttAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTgcgc < 2:543087/82‑1 (MQ=255)
ttAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTgcgc > 1:543087/1‑82 (MQ=255)
aaaCCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGgcgcgc < 2:920856/90‑1 (MQ=255)
aaaCCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGgcgcgc > 1:920856/1‑90 (MQ=255)
aaaCCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCt > 1:394602/1‑134 (MQ=255)
ccGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGgcgc < 2:587253/85‑1 (MQ=255)
ccGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGgcgc > 1:587253/1‑85 (MQ=255)
ccGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTTgg > 1:508768/1‑134 (MQ=255)
aGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTTGGGCa < 2:394602/134‑1 (MQ=255)
aGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTTGGGCa < 1:92703/134‑1 (MQ=255)
ggccgCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCtccgt > 2:211514/1‑45 (MQ=255)
ggccgCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCtccgt < 1:211514/45‑1 (MQ=255)
ggccgCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTgc > 1:690680/1‑120 (MQ=255)
ggccgCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTgc < 2:690680/120‑1 (MQ=255)
acaTGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTTGGGCATGGCTTTTGCTGa < 2:508768/134‑1 (MQ=255)
|
ATCGGGCGGGTTGCTTTGTCTTTCGCTCATCACTTTAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTG‑GCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTTGGGCATGGCTTTTGCTGA > AM260480/1636365‑1636613
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GACGCTGCCAGTTGTCGGCATCGGGCGGGTTGCTTTGTCTTTCGCTCATCACTTTAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTG‑GCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTTGGGCATGGCTTTTGCTGAACCACGCACTCCAGCCCGTCGCATC > AM260480/1636346‑1636638
|
tcaagcagaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacaGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTG < GWNJ‑0478:712:GW2002102894th:2:1105:10331:71027/83‑1 (MQ=60)
CTGCCAGTTGTCGGCATCGGGCGGGTTGCTTTGTCTTTCGCTCATCACTTTAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCC > GWNJ‑0478:712:GW2002102894th:2:2104:2594:69308/1‑150 (MQ=60)
TCGGGCGGGTTGCTTTGTCTTTCGCTCATCACTTTAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTG‑GCCCGGGCAACGGGCCTCCGT > GWNJ‑0478:712:GW2002102894th:2:1113:10063:6477/1‑150 (MQ=60)
agagacagGTCTTTCGCTCATCACTTTAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACA < GWNJ‑0478:712:GW2002102894th:2:1114:20797:69517/142‑1 (MQ=60)
acgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACAT < GWNJ‑0478:712:GW2002102894th:2:2111:17582:45754/101‑1 (MQ=60)
ttttttttcaagcagaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacaGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCC < GWNJ‑0478:712:GW2002102894th:2:1115:18475:36022/76‑1 (MQ=60)
TCACTTTAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCctgtctc > GWNJ‑0478:712:GW2002102894th:2:2101:12031:86866/1‑143 (MQ=60)
CTTTAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGG > GWNJ‑0478:712:GW2002102894th:2:1204:16045:8507/1‑150 (MQ=60)
CTTTAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGG > GWNJ‑0478:712:GW2002102894th:2:1113:3887:56181/1‑150 (MQ=60)
CTTTAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGG > GWNJ‑0478:712:GW2002102894th:2:2208:17538:19272/1‑150 (MQ=60)
TAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCtgtctcttatacacatctccgagcccacgagacggagct > GWNJ‑0478:712:GW2002102894th:2:1110:17431:26585/1‑111 (MQ=60)
TAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGC > GWNJ‑0478:712:GW2002102894th:2:1205:17989:49709/1‑150 (MQ=60)
GGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCtgtctcttatacacatctccgagcccacgagacggagctacatctc > GWNJ‑0478:712:GW2002102894th:2:1201:14604:64431/1‑104 (MQ=60)
GGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCG > GWNJ‑0478:712:GW2002102894th:2:1206:8862:27362/1‑150 (MQ=60)
GAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGACCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCct > GWNJ‑0478:712:GW2002102894th:2:2103:7778:23048/1‑148 (MQ=60)
GAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCC < GWNJ‑0478:712:GW2002102894th:2:1105:9124:64704/150‑1 (MQ=60)
GTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttg > GWNJ‑0478:712:GW2002102894th:2:2109:9173:77411/1‑83 (MQ=60)
GCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACG < GWNJ‑0478:712:GW2002102894th:2:1204:19168:47928/150‑1 (MQ=60)
CCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGC < GWNJ‑0478:712:GW2002102894th:2:2208:15393:83737/150‑1 (MQ=60)
CGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCtgtctcttatacacatctccgagcccacgagacgg > GWNJ‑0478:712:GW2002102894th:2:2103:13477:43372/1‑113 (MQ=60)
GCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCctgtctcttatacacatctccgagcccacg > GWNJ‑0478:712:GW2002102894th:2:2211:18015:36813/1‑120 (MQ=60)
GCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTT > GWNJ‑0478:712:GW2002102894th:2:1209:14746:97145/1‑150 (MQ=60)
GTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaaaaagaaccacttgcaaataaac > GWNJ‑0478:712:GW2002102894th:2:1208:20308:91201/1‑45 (MQ=60)
GTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGccctgtctcttatacacatctccgagcccacgagacg > GWNJ‑0478:712:GW2002102894th:2:2104:4267:58792/1‑113 (MQ=60)
GTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTTGGG > GWNJ‑0478:712:GW2002102894th:2:1216:19330:16244/1‑150 (MQ=60)
cgtctcgtgggctcggagatgtgtataagagacaGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTTGGGC < GWNJ‑0478:712:GW2002102894th:2:1112:18771:31603/116‑1 (MQ=60)
GAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTTGGGCATGGCT > GWNJ‑0478:712:GW2002102894th:2:2113:15519:4912/1‑150 (MQ=60)
GAGCCGGCCGCCGCACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTTGGGCATGGCTTTTGCTGAAC < GWNJ‑0478:712:GW2002102894th:2:1106:8066:33180/150‑1 (MQ=60)
ACATGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaa > GWNJ‑0478:712:GW2002102894th:2:1209:12563:63168/1‑81 (MQ=60)
TGGACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTTGGGCATGGCTTTTGCTGAACCACGCACTCCAGCCCGT > GWNJ‑0478:712:GW2002102894th:2:1210:6086:65532/1‑150 (MQ=60)
GACATTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTTGGGCATGGCTTTTGCTGAACCACGCACTCCAGCCCGTCG > GWNJ‑0478:712:GW2002102894th:2:1206:12101:14624/1‑150 (MQ=60)
TTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTTGGGCATGGCTctgtctcttatactcatctccgagcccacg > GWNJ‑0478:712:GW2002102894th:2:1208:17615:50450/1‑117 (MQ=60)
TTTTGTGCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTTGGGCATGGCTTTTGCTGAACCACGCACTCCAGCCCGTCGCATC > GWNJ‑0478:712:GW2002102894th:2:1211:8047:29822/1‑150 (MQ=60)
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GACGCTGCCAGTTGTCGGCATCGGGCGGGTTGCTTTGTCTTTCGCTCATCACTTTAGTTGTTGCGGGGCAAGGGAAGAGTCTAGCGACAGTCGGCCACCCGGCTGTATTGGGAATTAAACCGAGCCGGCCGCCGCACATGGACATTTTG‑GCCCGGGCAACGGGCCTCCGTCCGGACATTTTGTCCAAGGCTGCGCCCCGGCGCGCGGGGCCGCGCGACGCAATCCATTGACGACAAAGGGATTGCGCCTTGGGCATGGCTTTTGCTGAACCACGCACTCCAGCCCGTCGCATC > AM260480/1636346‑1636638
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
