Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
152 |
24.9 |
2083062 |
91.6% |
1908084 |
109.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260480 |
2,135,859 |
+C |
intergenic (‑237/‑97) |
h16_B1889 ← / → h16_B1890 |
transcriptional regulator, IclR‑family/APC transporter, AAT family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260480 | 2,135,857 | 1 | . | C | 100.0%
| 227.3
/ NA
| 58 | intergenic (‑235/‑99) | h16_B1889/h16_B1890 | transcriptional regulator, IclR‑family/APC transporter, AAT family |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (33/25); total (33/25) |
AAAGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTG‑CCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACGG > AM260480/2135724‑2135984
|
aaaGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg < 2:960297/134‑1 (MQ=255)
aaaGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg > 2:642678/1‑134 (MQ=255)
aaaGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg < 1:851589/134‑1 (MQ=255)
aaaGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg > 1:369660/1‑134 (MQ=255)
gAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg‑ccc < 2:369660/134‑2 (MQ=255)
aCAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg‑ccctg < 2:147945/134‑4 (MQ=255)
cAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg‑cc < 2:44569/130‑1 (MQ=255)
cAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg‑cc > 1:44569/1‑130 (MQ=255)
ttCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCta > 2:119369/1‑134 (MQ=255)
aGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg < 1:642678/134‑1 (MQ=255)
ccGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCgcctg < 2:576292/125‑1 (MQ=255)
ccGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCgcctg > 1:576292/1‑125 (MQ=255)
gagaCAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTg < 1:119369/134‑1 (MQ=255)
gTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGc < 2:997482/134‑1 (MQ=255)
aCATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATc < 1:193043/84‑1 (MQ=255)
aCATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATc > 2:193043/1‑84 (MQ=255)
cATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg > 1:647100/1‑103 (MQ=255)
cATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg < 2:647100/103‑1 (MQ=255)
cATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCaa > 2:270572/1‑134 (MQ=255)
aTGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAAc < 1:230435/134‑1 (MQ=255)
gTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACg > 2:23631/1‑133 (MQ=255)
aTAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTAcc > 2:562327/1‑134 (MQ=255)
ccATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAg < 1:543288/134‑1 (MQ=255)
tccctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATc < 1:184450/66‑1 (MQ=255)
tccctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATc > 2:184450/1‑66 (MQ=255)
tccctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGc > 1:66594/1‑132 (MQ=255)
tccctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGc > 1:707193/1‑132 (MQ=255)
tccctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGc > 1:921183/1‑132 (MQ=255)
ctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAgcg < 2:921183/134‑1 (MQ=255)
ctcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCGGTACTGGCTGCAACGCAGTACCGACAGCTAgcg < 2:66594/134‑1 (MQ=255)
tcccCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAgcg > 1:438868/1‑133 (MQ=255)
ccccGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg > 2:315351/1‑51 (MQ=255)
ccccGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTActg < 1:315351/51‑1 (MQ=255)
ccccGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTg > 1:157373/1‑105 (MQ=255)
ccccGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTg < 1:652748/105‑1 (MQ=255)
ccccGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTg > 2:652748/1‑105 (MQ=255)
ccccGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTg < 2:157373/105‑1 (MQ=255)
cccGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCgcag < 1:182543/134‑1 (MQ=255)
gggATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCgcctg < 1:256126/84‑1 (MQ=255)
gggATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCgcctg > 2:256126/1‑84 (MQ=255)
ggATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGc > 1:108802/1‑93 (MQ=255)
ggATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGc < 2:108802/93‑1 (MQ=255)
ggATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCt > 1:972831/1‑123 (MQ=255)
ggATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCt < 2:972831/123‑1 (MQ=255)
ggATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAgcgc < 2:659001/128‑1 (MQ=255)
ggATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAgcgc > 1:659001/1‑128 (MQ=255)
aaTACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTg > 2:98735/1‑87 (MQ=255)
aaTACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTg < 1:98735/87‑1 (MQ=255)
aaTACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGaca > 2:1006319/1‑133 (MQ=255)
gACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCgcctg < 2:647303/65‑1 (MQ=255)
gACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCgcctg > 1:647303/1‑65 (MQ=255)
gACCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATc > 1:432711/1‑133 (MQ=255)
aCCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATcc > 1:808094/1‑133 (MQ=255)
aCCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATcc > 1:482789/1‑133 (MQ=255)
aCCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATcc > 2:434548/1‑133 (MQ=255)
aCCACGGCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATcc > 1:266633/1‑133 (MQ=255)
ggCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAg > 2:522917/1‑111 (MQ=255)
ggCCCCAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAg < 1:522917/111‑1 (MQ=255)
cAGGCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCagag > 1:13901/1‑134 (MQ=255)
gCTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTcc < 2:432711/134‑1 (MQ=255)
cTGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCg < 2:438868/134‑1 (MQ=255)
tGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg < 2:223181/42‑1 (MQ=255)
tGGCAATTACTGCCCTGCCATCTATACCGAAGAGAAGCCGTg > 1:223181/1‑42 (MQ=255)
ttACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTg > 2:724241/1‑64 (MQ=255)
ttACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTg < 1:724241/64‑1 (MQ=255)
ttACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACgg > 2:641277/1‑134 (MQ=255)
ttACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACgg > 1:905/1‑134 (MQ=255)
ttACTGCCCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACgg > 2:142072/1‑134 (MQ=255)
|
AAAGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTG‑CCTGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACGG > AM260480/2135724‑2135984
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACATTCCAGTGAAAGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTG‑CC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACGGGCTATCCCACGGCCTGAAGC > AM260480/2135713‑2136004
|
ACATTCCAGTGAAAGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTG‑CC‑C < GWNJ‑0478:712:GW2002102894th:2:1207:7966:19558/148‑1 (MQ=60)
ATTCCAGTGAAAGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTG‑CCATGCC > GWNJ‑0478:712:GW2002102894th:2:1102:9758:7758/1‑150 (MQ=60)
GAAAGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATAC < GWNJ‑0478:712:GW2002102894th:2:2209:8424:6335/150‑1 (MQ=60)
ttcaagcagaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATAC < GWNJ‑0478:712:GW2002102894th:2:1205:4098:97160/81‑1 (MQ=60)
ggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagTGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAG < GWNJ‑0478:712:GW2002102894th:2:1113:4802:84874/96‑1 (MQ=60)
ccgtctcgtgggctcggagatgtgtataagagacagACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAG < GWNJ‑0478:712:GW2002102894th:2:1112:11914:34364/114‑1 (MQ=60)
gttttttctgtcatgtgttgttttttttttcaagcagaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGG < GWNJ‑0478:712:GW2002102894th:2:1112:9879:47120/53‑1 (MQ=60)
CAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAAC < GWNJ‑0478:712:GW2002102894th:2:2109:17277:20425/150‑1 (MQ=60)
gtgcctatacggggtataagtttcgccttcttttttcttttaagcagaagacggcatacaagatgtagttccgtctcgtgggctcggagatgtgtataagagacagC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAAC < GWNJ‑0478:712:GW2002102894th:2:2216:19335:5841/43‑1 (MQ=60)
GTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGC > GWNJ‑0478:712:GW2002102894th:2:2105:11191:82390/1‑150 (MQ=60)
ccgtctcgtgggctcggagatgtgtataagagacagAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTAC < GWNJ‑0478:712:GW2002102894th:2:1116:8945:87580/114‑1 (MQ=60)
CCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACctgtctcttatacacat > GWNJ‑0478:712:GW2002102894th:2:2109:11944:47315/1‑133 (MQ=60)
CCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTG‑CCcctgtctcatatacacatctccgagcccacgagacggagctacatctcgtatgccgtctt > GWNJ‑0478:712:GW2002102894th:2:1209:1406:25803/1‑90 (MQ=60)
GGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGC < GWNJ‑0478:712:GW2002102894th:2:1109:20282:2164/150‑1 (MQ=60)
cgtgggctcggagatgtgtataagagacagCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGC < GWNJ‑0478:712:GW2002102894th:2:1106:10980:71101/117‑1 (MQ=60)
gtgtataagagacagGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTAC < GWNJ‑0478:712:GW2002102894th:2:2109:12464:81183/135‑1 (MQ=60)
GTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTG‑CCctgcctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttg > GWNJ‑0478:712:GW2002102894th:2:2107:4786:37915/1‑80 (MQ=60)
acggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacaGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGAC < GWNJ‑0478:712:GW2002102894th:2:2112:19149:97399/95‑1 (MQ=60)
CATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCT < GWNJ‑0478:712:GW2002102894th:2:1114:14747:39568/150‑1 (MQ=60)
TGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCT > GWNJ‑0478:712:GW2002102894th:2:2211:6161:38838/1‑148 (MQ=60)
TGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCT > GWNJ‑0478:712:GW2002102894th:2:1104:15691:63295/1‑148 (MQ=60)
TGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCT > GWNJ‑0478:712:GW2002102894th:2:2113:17724:98166/1‑148 (MQ=60)
CGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGC > GWNJ‑0478:712:GW2002102894th:2:1213:5940:45459/1‑149 (MQ=60)
GGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCtgtctcttatacac > GWNJ‑0478:712:GW2002102894th:2:1110:14195:28444/1‑136 (MQ=60)
gacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagttactgcCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCAC < GWNJ‑0478:712:GW2002102894th:2:1110:7172:95066/86‑1 (MQ=60)
GGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACctgtctcttatacacatctccgagccc > GWNJ‑0478:712:GW2002102894th:2:1108:6979:36539/1‑123 (MQ=60)
GGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCAC > GWNJ‑0478:712:GW2002102894th:2:2111:16002:19553/1‑148 (MQ=60)
GGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCAC > GWNJ‑0478:712:GW2002102894th:2:2213:20421:33801/1‑148 (MQ=60)
GCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGG < GWNJ‑0478:712:GW2002102894th:2:2103:21139:44599/150‑1 (MQ=60)
CCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAAC < GWNJ‑0478:712:GW2002102894th:2:1113:14924:73462/150‑1 (MQ=60)
aagagacagATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGAT < GWNJ‑0478:712:GW2002102894th:2:1216:17277:96195/141‑1 (MQ=60)
TTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccg > GWNJ‑0478:712:GW2002102894th:2:2109:4685:48729/1‑95 (MQ=60)
TTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCC > GWNJ‑0478:712:GW2002102894th:2:1213:4120:12868/1‑149 (MQ=60)
TGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCA > GWNJ‑0478:712:GW2002102894th:2:2202:11557:10865/1‑149 (MQ=60)
TGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCA > GWNJ‑0478:712:GW2002102894th:2:1215:19854:79451/1‑149 (MQ=60)
TGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCA > GWNJ‑0478:712:GW2002102894th:2:1201:18520:61964/1‑149 (MQ=60)
GAACGACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGT > GWNJ‑0478:712:GW2002102894th:2:1103:2372:3024/1‑150 (MQ=60)
ACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaaaaagaaagcaacaataatgcgccacgaatgagc > GWNJ‑0478:712:GW2002102894th:2:1205:16112:62326/1‑40 (MQ=60)
ACCACGGCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:1115:2731:99549/1‑72 (MQ=60)
GCCCCAGGCTGGCAATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACGGG > GWNJ‑0478:712:GW2002102894th:2:1101:7605:8197/1‑150 (MQ=60)
ATTACTGCCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACctgtctcttatacacatctccgagcccacggacggagctacatctcgtatgccgtc > GWNJ‑0478:712:GW2002102894th:2:1214:18578:21610/1‑94 (MQ=60)
gcCC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACGGGCTATCCCACGGCCTGAAGC < GWNJ‑0478:712:GW2002102894th:2:1103:17685:68704/147‑1 (MQ=60)
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ACATTCCAGTGAAAGAACAATTTTTCGGAACTTCTGGTTCCAGTTTTTAAGCGATCACCGGAGACAAGTCGACATGTACGGATAGGCCATCCCTCCCCGGGATTGCAAATACTGAACGACCACGGCCCCAGGCTGGCAATTACTG‑CC‑TGCCATCTATACCGAAGAGAAGCCGTGGCGCCTGCCTTAAACGCTGTACTGGCTGCAACGCAGTACCGACAGCTAGCGCAGCACAGGAGACACAACATGATCCAACAACCAGAGTCCGGCAACGGGCTATCCCACGGCCTGAAGC > AM260480/2135713‑2136004
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
