Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
155 |
25.8 |
2285122 |
88.0% |
2010907 |
104.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260479 |
1,841,200 |
+G |
intergenic (‑2736/‑2680) |
h16_A1684 ← / → ycaC |
conserved hypothetical protein/YcaC related amidohydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260479 | 1,841,197 | 1 | . | G | 97.2%
| 134.3
/ ‑2.9
| 36 | intergenic (‑2733/‑2683) | h16_A1684/ycaC | conserved hypothetical protein/YcaC related amidohydrolase |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (18/17); total (19/17) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GATCTCGAAGAAGCGTCGGCGGCAATGCGCCCAGCATCCGCCCTCGATGATCCGGCCGGTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCA‑GG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGGTAGCCCCATAGATGGGCCTGCCGCG > AM260479/1841067‑1841319
|
gATCTCGAAGAAGCGTCGGCGGCAATGCGCCCAGCATCCGCCCTCGATGATCCGGCCGGTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCA‑gg‑g > 2:1139337/1‑134 (MQ=255)
gcggcAATGCGCCCAGCATCCGCCCTCGATGATCCGGCCGGTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCgg > 1:889067/1‑133 (MQ=255)
ggcAATGCGCCCAGCATCCGCCCTCGATGATCCGGCCGGTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGAt > 1:703336/1‑134 (MQ=255)
gcAATGCGCCCAGCATCCGCCCTCGATGATCCGGCCGGTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGAtt > 1:728113/1‑134 (MQ=255)
aaTGCGCCCAGCATCCGCCCTCGATGATCCGGCCGGTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTcc < 2:728113/134‑1 (MQ=255)
tGCGCCCAGCATCCGCCCTCGATGATCCGGCCGGTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCcgc < 2:889067/134‑1 (MQ=255)
ccAGCATCCGCCCTCGATGATCCGGCCGGTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACt < 2:439022/134‑1 (MQ=255)
gTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGAc < 1:347488/134‑1 (MQ=255)
tACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGAcc > 2:142926/1‑134 (MQ=255)
tACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGAcc > 1:792080/1‑134 (MQ=255)
gcgcATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCg > 2:588489/1‑134 (MQ=255)
gcgcATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCg > 2:882968/1‑134 (MQ=255)
tCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGAcc < 1:1037170/120‑1 (MQ=255)
tCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCA‑GGAGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGAcc > 2:1037170/1‑120 (MQ=255)
ccGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCg < 1:1137011/134‑1 (MQ=255)
cGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGc < 1:670061/134‑1 (MQ=255)
ggCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCg < 1:142926/133‑1 (MQ=255)
cgccTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGa < 2:792080/134‑1 (MQ=255)
cTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAgg > 1:1104617/1‑133 (MQ=255)
tGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGccc < 1:285901/122‑1 (MQ=255)
tGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGccc > 2:285901/1‑122 (MQ=255)
tGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAgg > 1:1066809/1‑132 (MQ=255)
cAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGccc > 1:350253/1‑120 (MQ=255)
cAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGccc < 2:350253/120‑1 (MQ=255)
tGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCcgc > 2:1134108/1‑50 (MQ=255)
tGATAGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCcgc < 1:1134108/50‑1 (MQ=255)
aGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGGTAGCCCCATAGATggg > 1:405391/1‑132 (MQ=255)
aGTCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGGTAGCCCCATAGATggg < 2:405391/132‑1 (MQ=255)
tCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGaa < 1:414186/47‑1 (MQ=39)
tCGCGCAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGaa > 2:414186/1‑47 (MQ=39)
cAGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGGTAGCCCCATAGATGGGCCTGCcgcg > 2:1087115/1‑134 (MQ=255)
aGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCtggt > 2:985781/1‑64 (MQ=255)
aGGAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCtggt < 1:985781/64‑1 (MQ=255)
ggAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAg < 2:218499/49‑1 (MQ=38)
ggAAGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAg > 1:218499/1‑49 (MQ=38)
aaGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCtggt > 2:416902/1‑61 (MQ=255)
aaGTTCAGGG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCtggt < 1:416902/61‑1 (MQ=255)
|
GATCTCGAAGAAGCGTCGGCGGCAATGCGCCCAGCATCCGCCCTCGATGATCCGGCCGGTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCA‑GG‑GATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGGTAGCCCCATAGATGGGCCTGCCGCG > AM260479/1841067‑1841319
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTCGAAGAAGCGTCGGCGGCAATGCGCCCAGCATCCGCCCTCGATGATCCGGCCGGTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCA‑GGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGGTAGCCCCATAGATGGGCCTGCCGCGTGGTGGCGCGCCTGCGCTCGAGTAGTGGC > AM260479/1841070‑1841348
|
CTCGAAGAAGCGTCGGCGGCAATGCGCCCAGCATCCGCCCTCGATGATCCGGCCGGTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGG > GWNJ‑0478:712:GW2002102894th:2:2202:20989:18907/1‑149 (MQ=60)
CGAAGAAGCGTCGGCGGCAATGCGCCCAGCATCCGCCCTCGATGATCCGGCCGGTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATT > GWNJ‑0478:712:GW2002102894th:2:2109:4411:4556/1‑150 (MQ=60)
GAAGAAGCGTCGGCGGCAATGCGCCCAGCATCCGCCCTCGATGATCCGGCCGGTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTC > GWNJ‑0478:712:GW2002102894th:2:2111:4665:41257/1‑150 (MQ=60)
tttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCAC < GWNJ‑0478:712:GW2002102894th:2:2216:1472:57724/80‑1 (MQ=60)
ttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGC < GWNJ‑0478:712:GW2002102894th:2:1208:2884:91224/77‑1 (MQ=60)
CGATGATCCGGCCGGTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCC > GWNJ‑0478:712:GW2002102894th:2:2112:6221:82410/1‑150 (MQ=60)
gtgttcttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagaCA‑GGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATC < GWNJ‑0478:712:GW2002102894th:2:1211:8565:6560/70‑1 (MQ=60)
acggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATC < GWNJ‑0478:712:GW2002102894th:2:2207:14749:94477/96‑1 (MQ=60)
aagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagTGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATC < GWNJ‑0478:712:GW2002102894th:2:1209:7971:6322/91‑1 (MQ=60)
GGTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTC < GWNJ‑0478:712:GW2002102894th:2:1204:12965:7866/150‑1 (MQ=60)
GTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCC < GWNJ‑0478:712:GW2002102894th:2:2210:14936:75734/150‑1 (MQ=60)
tcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaggttcagGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCC < GWNJ‑0478:712:GW2002102894th:2:1202:13041:6031/76‑1 (MQ=60)
GCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAG < GWNJ‑0478:712:GW2002102894th:2:2216:8937:72137/150‑1 (MQ=60)
CCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGG < GWNJ‑0478:712:GW2002102894th:2:2106:3801:6863/150‑1 (MQ=60)
GCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaggcagcgct > GWNJ‑0478:712:GW2002102894th:2:1206:13372:73656/1‑63 (MQ=60)
GCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGGT > GWNJ‑0478:712:GW2002102894th:2:2215:15124:18375/1‑149 (MQ=60)
CTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGGT > GWNJ‑0478:712:GW2002102894th:2:2213:15830:30247/1‑148 (MQ=60)
GTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGGTAGCC > GWNJ‑0478:712:GW2002102894th:2:1204:14084:24734/1‑150 (MQ=60)
GTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGGTAGCC < GWNJ‑0478:712:GW2002102894th:2:1201:2695:23135/150‑1 (MQ=60)
AGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGGTAGCCC < GWNJ‑0478:712:GW2002102894th:2:1109:12662:67234/149‑1 (MQ=60)
GCAGGTAGCCATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGGTAGCCCCATAGATGGGCCT > GWNJ‑0478:712:GW2002102894th:2:1208:5148:44341/1‑150 (MQ=60)
CATGATAGTCGCGCAGGAAGTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaa > GWNJ‑0478:712:GW2002102894th:2:1112:9393:67313/1‑79 (MQ=60)
GTTCAGGGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGGTAGCCCCATAGATGGGCCTGCCGCGTGGTGGCGCGCCTGCGCTCG > GWNJ‑0478:712:GW2002102894th:2:2116:13061:43583/1‑148 (MQ=60)
GGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGGTAGCCCCATctgtctcttatacacatctccgagcccacgagacactcgctaatc > GWNJ‑0478:712:GW2002102894th:2:2213:6824:91905/1‑105 (MQ=60)
GGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGGTAGCCCCATAGATGGGCCTGCCGCGTGGTGGCGCGCCTGCGCTCGAGTAGTGGC < GWNJ‑0478:712:GW2002102894th:2:2101:4776:96414/150‑1 (MQ=60)
|
CTCGAAGAAGCGTCGGCGGCAATGCGCCCAGCATCCGCCCTCGATGATCCGGCCGGTACGGCAAAGCGCATCGTGGCCGCTGTAGGCAGCCGCCTGCAGGTAGCCATGATAGTCGCGCAGGAAGTTCA‑GGGATGGGCGCCGGCGCGGGATTCCGCGAACTCGAACAGCACCGCTGGCTGGTGGTCGACCCATAATCCGTTCTCCTGCCGCAGCCCGGCCACGAGGTAGCCCCATAGATGGGCCTGCCGCGTGGTGGCGCGCCTGCGCTCGAGTAGTGGC > AM260479/1841070‑1841348
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
