Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
154 |
26.6 |
2069536 |
90.2% |
1866721 |
108.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260479 |
406,488 |
G→T |
L70I (CTC→ATC) |
h16_A0388 ← |
ABC‑type transporter, ATPase component: HAAT family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260479 | 406,488 | 0 | G | T | 100.0%
| 121.7
/ NA
| 33 | L70I (CTC→ATC) | h16_A0388 | ABC‑type transporter, ATPase component: HAAT family |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (15/18); total (15/18) |
AATACCGAGGCTTCCTGCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGAGCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGAGCCATAGCGTTTCTTC > AM260479/406364‑406606
|
aaTACCGAGGCTTCCTGCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAg > 1:542952/1‑132 (MQ=255)
ttCCTGCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCt > 1:883353/1‑134 (MQ=255)
gCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGccc > 1:85031/1‑134 (MQ=255)
gCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCcgcg < 1:180822/134‑1 (MQ=255)
aGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGccc < 2:85031/134‑1 (MQ=255)
aTGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAg > 1:438794/1‑134 (MQ=255)
aTGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAg > 1:671704/1‑134 (MQ=255)
tGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAgg > 2:175053/1‑134 (MQ=255)
cgcgcgcTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGa > 2:388085/1‑134 (MQ=255)
gcTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGaccacc > 2:506601/1‑134 (MQ=255)
cTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCt < 2:542952/134‑1 (MQ=255)
cTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCt > 1:760326/1‑134 (MQ=255)
cTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCt < 1:175053/134‑1 (MQ=255)
gCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGt < 2:480576/95‑1 (MQ=255)
gCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGt > 1:480576/1‑95 (MQ=255)
aTGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTcgagcga < 2:760326/134‑1 (MQ=255)
aTGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTcgagc < 2:883353/132‑1 (MQ=255)
aTGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTcgagc < 2:1024868/132‑1 (MQ=255)
ccGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGt > 1:703047/1‑118 (MQ=255)
ccGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGt < 2:703047/118‑1 (MQ=255)
cGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAaggagg < 2:13562/60‑1 (MQ=255)
cGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAaggagg > 1:13562/1‑60 (MQ=255)
gTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGa < 2:167175/134‑1 (MQ=255)
cACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCg < 2:438794/134‑1 (MQ=255)
tCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGa < 1:506601/134‑1 (MQ=255)
gCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCg > 1:55629/1‑125 (MQ=255)
gCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCg < 2:55629/125‑1 (MQ=255)
ccAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTc > 1:566489/1‑79 (MQ=255)
ccAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTc < 2:566489/79‑1 (MQ=255)
ccAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGt < 2:534245/118‑1 (MQ=255)
ccAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGt > 1:534245/1‑118 (MQ=255)
cgcCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGAGCCATAGCGTttct < 1:686347/134‑1 (MQ=255)
ccaccaGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGAGCCATAGCGTttcttc < 2:671704/134‑1 (MQ=255)
|
AATACCGAGGCTTCCTGCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGAGCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGAGCCATAGCGTTTCTTC > AM260479/406364‑406606
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTCTCTTCGACGTTGAGCTTGCGGAATACCGAGGCTTCCTGCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGAGCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGAGCCATAGCGTTTCTTCAGGTGGCGCACGACCAGCGTGCTGCCGCCG > AM260479/406339‑406636
|
GTTCTCTTCGACGTTGAGCTTGCGGAATACCGAGGCTTCCTGCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGAT < GWNJ‑0478:712:GW2002102894th:2:1215:11487:55292/150‑1 (MQ=60)
agagacagGAGCTTGCGGAATACCGAGGCTTCCTGCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAG < GWNJ‑0478:712:GW2002102894th:2:1110:11834:84370/142‑1 (MQ=60)
ttcaagcagaagacggcatacgagttgtagctccgtctcgtgggctcggagatgtgtataagagacaGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAG < GWNJ‑0478:712:GW2002102894th:2:2113:17010:33984/82‑1 (MQ=60)
ACGTTGAGCTTGCGGAATACCGAGGCTTCCTGCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGA > GWNJ‑0478:712:GW2002102894th:2:2103:20028:70634/1‑148 (MQ=60)
cgtctcgtgggctcggagatgtgtataagagacagAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGG < GWNJ‑0478:712:GW2002102894th:2:2105:11301:37841/115‑1 (MQ=60)
ttttttcaagcagaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacaGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGtggtc < GWNJ‑0478:712:GW2002102894th:2:2215:20676:65917/78‑6 (MQ=60)
GCGGAATACCGAGGCTTCCTGCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTT > GWNJ‑0478:712:GW2002102894th:2:2207:11607:30417/1‑150 (MQ=60)
ATACCGAGGCTTCCTGCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGGGGTCTTGCCCG > GWNJ‑0478:712:GW2002102894th:2:1107:15841:80547/1‑150 (MQ=60)
GGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGC < GWNJ‑0478:712:GW2002102894th:2:1113:10562:66479/150‑1 (MQ=60)
AGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGG > GWNJ‑0478:712:GW2002102894th:2:1213:2177:62628/1‑150 (MQ=60)
AGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGG > GWNJ‑0478:712:GW2002102894th:2:2110:7655:15180/1‑150 (MQ=60)
CCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTC > GWNJ‑0478:712:GW2002102894th:2:2116:20255:26505/1‑150 (MQ=60)
GCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGT < GWNJ‑0478:712:GW2002102894th:2:1113:12731:33074/150‑1 (MQ=60)
CTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctg > GWNJ‑0478:712:GW2002102894th:2:1207:17672:95201/1‑88 (MQ=60)
CTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCtgtctcttatacacatctccgagc > GWNJ‑0478:712:GW2002102894th:2:1215:15309:88979/1‑126 (MQ=60)
CCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTct > GWNJ‑0478:712:GW2002102894th:2:2113:19689:98231/1‑148 (MQ=60)
CGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCtgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttc > GWNJ‑0478:712:GW2002102894th:2:1101:4237:99401/1‑91 (MQ=60)
GTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGAGCC > GWNJ‑0478:712:GW2002102894th:2:1102:5689:84290/1‑150 (MQ=60)
CGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCctgtctcttatacacatctccgagcccacgagacggagct > GWNJ‑0478:712:GW2002102894th:2:2105:1450:43330/1‑109 (MQ=60)
CGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGAGCCATAGCGCT > GWNJ‑0478:712:GW2002102894th:2:2103:1604:11337/1‑150 (MQ=60)
AGCGCCTTCGTCCAGCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGAGCCATAGCGTTTCTT < GWNJ‑0478:712:GW2002102894th:2:1216:11565:29602/150‑1 (MQ=60)
GCGCCACCAGGCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGAGCCATAGCGTTTCTTCAGGTGGCGCACGA < GWNJ‑0478:712:GW2002102894th:2:2113:8000:2926/150‑1 (MQ=60)
GCCCACGATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCtgtctcttatacacatctccgagcccacgagacggagctacatctcg > GWNJ‑0478:712:GW2002102894th:2:1208:3026:29598/1‑103 (MQ=60)
ATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaacaaaaccaaaaaaaaatgacaacataaat > GWNJ‑0478:712:GW2002102894th:2:2102:12379:65463/1‑45 (MQ=60)
ATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttg > GWNJ‑0478:712:GW2002102894th:2:2111:20051:2719/1‑84 (MQ=60)
ATCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGctgtctcttatacacatctccgagcccacgagacggagctacatctc > GWNJ‑0478:712:GW2002102894th:2:1108:2385:34345/1‑103 (MQ=60)
|
GTTCTCTTCGACGTTGAGCTTGCGGAATACCGAGGCTTCCTGCGGCAGGTACGACAGCCCCATGCGCGCGCGCTCGTGGATCGGCAGGCCGCTGATGTGGTCGCCGTCGAGCACGATATCGCCTTCGTCCAGCGCCACCAGGCCCACGAGCATGTAGAAGGAGGTGGTCTTGCCCGCGCCGTTGGGCCCAAGCAGGCCGACCACCTCGCCGCTCTTCACGTCGAGCGAGACGTCCTTGACCACCGTGCGCGAGCCATAGCGTTTCTTCAGGTGGCGCACGACCAGCGTGCTGCCGCCG > AM260479/406339‑406636
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
