Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
149 |
26.7 |
2337422 |
87.5% |
2045244 |
105.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260480 |
433,189 |
A→C |
R133R (CGA→CGC) |
h16_B0381 → |
Acetyl‑CoA acetyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260480 | 433,189 | 0 | A | C | 100.0%
| 221.8
/ NA
| 56 | R133R (CGA→CGC) | h16_B0381 | Acetyl‑CoA acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (28/28); total (28/28) |
ATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGATACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCGC > AM260480/433061‑433318
|
aTGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACgg > 2:103446/1‑134 (MQ=255)
tgtgCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGc > 1:405028/1‑134 (MQ=255)
ggCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACg > 2:29410/1‑127 (MQ=255)
ggCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACg < 1:29410/127‑1 (MQ=255)
cTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGcc > 2:948205/1‑134 (MQ=255)
cTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGcc > 1:522540/1‑134 (MQ=255)
tGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCAc < 2:235005/134‑1 (MQ=255)
tGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTc < 2:522540/134‑1 (MQ=255)
tGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCACCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTc < 2:953993/134‑1 (MQ=255)
aTGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCt > 2:1045246/1‑134 (MQ=255)
aTGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCt < 1:290584/134‑1 (MQ=255)
aTGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGCCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCt < 1:830032/134‑1 (MQ=255)
aTGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATg > 1:945729/1‑134 (MQ=255)
ctgctgCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGt > 1:957517/1‑115 (MQ=255)
ctgctgCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGt < 2:957517/115‑1 (MQ=255)
ctgctgCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTg < 2:405028/134‑1 (MQ=255)
ttGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACg < 1:1163951/84‑1 (MQ=255)
ttGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGACCCGCGCGGCCGCTaag > 2:1163951/1‑82 (MQ=255)
ccGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCt < 2:945729/133‑1 (MQ=255)
cAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGcc < 1:1045246/133‑1 (MQ=255)
cAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGcc < 1:103446/133‑1 (MQ=255)
ggtggcggGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGc > 1:1051848/1‑133 (MQ=255)
tggcggGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCAc > 2:87944/1‑134 (MQ=255)
tggcggGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCAc > 1:808836/1‑134 (MQ=255)
tggcggGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCAc < 1:87944/134‑1 (MQ=255)
ggcgggcgGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGa > 2:1115548/1‑90 (MQ=255)
ggcgggcgGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGa < 1:1115548/90‑1 (MQ=255)
gcgggcggCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCt < 2:808836/134‑1 (MQ=255)
aTGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGt > 2:1040956/1‑73 (MQ=255)
aTGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGt < 1:1040956/73‑1 (MQ=255)
gAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCAc < 1:500172/63‑1 (MQ=255)
gAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCAc > 2:500172/1‑63 (MQ=255)
gAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGctacta < 1:948205/134‑1 (MQ=255)
gATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTgg > 2:682849/1‑95 (MQ=255)
gATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTgg > 2:103356/1‑95 (MQ=255)
gATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTgg < 1:682849/95‑1 (MQ=255)
gATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTgg < 1:103356/95‑1 (MQ=255)
ccAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTc > 1:880430/1‑134 (MQ=255)
gcgcCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAg < 2:1138219/54‑1 (MQ=255)
gcgcCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAg > 1:1138219/1‑54 (MQ=255)
tCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAg < 2:1025879/125‑1 (MQ=255)
tCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAg > 1:1025879/1‑125 (MQ=255)
ccGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCa < 2:1051848/133‑1 (MQ=255)
gcgcgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCt > 2:235247/1‑90 (MQ=255)
gcgcgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCt < 1:235247/90‑1 (MQ=255)
cgcgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATggg > 2:288091/1‑134 (MQ=255)
cgcgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATggg > 1:419826/1‑134 (MQ=255)
cgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACt < 2:989707/53‑1 (MQ=255)
cgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACt > 1:989707/1‑53 (MQ=255)
cgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTcgccgc > 2:521650/1‑114 (MQ=255)
cgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTcgccgc < 1:521650/114‑1 (MQ=255)
cgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGcc < 2:419826/134‑1 (MQ=255)
cgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGcc > 1:239200/1‑134 (MQ=255)
gCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTc < 1:975758/38‑1 (MQ=38)
gCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTc > 2:975758/1‑38 (MQ=38)
gCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCcgc > 1:549614/1‑134 (MQ=255)
|
ATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGATACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCGC > AM260480/433061‑433318
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGCCACCACTATCAGCAAGATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGATACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCGCGAGGCACAGGATGCGTA > AM260480/433042‑433335
|
GGCCACCACTATCAGCAAGATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCT > GWNJ‑0478:712:GW2002102894th:2:1212:13820:39858/1‑149 (MQ=60)
GGCCACCACTATCAGCAAGATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCT > GWNJ‑0478:712:GW2002102894th:2:1115:18140:56771/1‑149 (MQ=60)
CAGCACTATCAGCAAGATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGG < GWNJ‑0478:712:GW2002102894th:2:1115:10693:76331/150‑1 (MQ=60)
CCACTATCAGCAAGATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCT > GWNJ‑0478:712:GW2002102894th:2:1208:14882:46161/1‑150 (MQ=60)
GCTATCAGCAAGATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTAC < GWNJ‑0478:712:GW2002102894th:2:2203:4418:56636/150‑1 (MQ=60)
CAGCAAGATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCT > GWNJ‑0478:712:GW2002102894th:2:1215:18510:55851/1‑150 (MQ=60)
gtgtctcgtgggctcggagatgtgtataagagacaGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGC < GWNJ‑0478:712:GW2002102894th:2:2216:15346:80089/115‑1 (MQ=60)
AGATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGC < GWNJ‑0478:712:GW2002102894th:2:1103:12918:89089/150‑1 (MQ=60)
gacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGAC < GWNJ‑0478:712:GW2002102894th:2:1212:4067:49959/94‑1 (MQ=60)
gagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGT < GWNJ‑0478:712:GW2002102894th:2:2211:12608:98297/104‑1 (MQ=60)
CCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGT > GWNJ‑0478:712:GW2002102894th:2:2205:4529:70556/1‑150 (MQ=60)
tgttgtgttttttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTAC < GWNJ‑0478:712:GW2002102894th:2:2202:1845:98341/60‑1 (MQ=60)
GATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTG < GWNJ‑0478:712:GW2002102894th:2:1201:8170:41786/150‑1 (MQ=60)
GATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGCCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTG < GWNJ‑0478:712:GW2002102894th:2:2114:18489:14950/150‑1 (MQ=60)
ATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTctgtc > GWNJ‑0478:712:GW2002102894th:2:2209:19152:37643/1‑145 (MQ=60)
tttttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGC < GWNJ‑0478:712:GW2002102894th:2:2206:15705:38186/68‑1 (MQ=60)
cgtgggctcggagatgtgtataagagacagCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGA < GWNJ‑0478:712:GW2002102894th:2:2214:16359:66580/120‑1 (MQ=60)
gctcggagatgtgtataagagacagGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAG < GWNJ‑0478:712:GW2002102894th:2:2106:8299:60103/125‑1 (MQ=60)
gctcggagatgtgtataagagacagGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAG < GWNJ‑0478:712:GW2002102894th:2:1106:6500:44681/125‑1 (MQ=60)
CACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCC > GWNJ‑0478:712:GW2002102894th:2:2210:3846:55799/1‑149 (MQ=60)
CCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACC > GWNJ‑0478:712:GW2002102894th:2:2115:20511:18264/1‑150 (MQ=60)
GCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTG < GWNJ‑0478:712:GW2002102894th:2:1106:14536:45060/149‑1 (MQ=60)
GCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTG < GWNJ‑0478:712:GW2002102894th:2:2210:17059:21742/149‑1 (MQ=60)
GTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTAC < GWNJ‑0478:712:GW2002102894th:2:1107:18417:53967/150‑1 (MQ=60)
cgtgggctcggagatgtgtataagagacagGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGC < GWNJ‑0478:712:GW2002102894th:2:1115:15004:58117/120‑1 (MQ=60)
GCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCG > GWNJ‑0478:712:GW2002102894th:2:2201:8777:71149/1‑150 (MQ=60)
GGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGC < GWNJ‑0478:712:GW2002102894th:2:2205:8759:85109/150‑1 (MQ=60)
GAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttg > GWNJ‑0478:712:GW2002102894th:2:2215:11209:68491/1‑84 (MQ=60)
ACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGC > GWNJ‑0478:712:GW2002102894th:2:2211:17108:21695/1‑149 (MQ=60)
agacagGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCAT < GWNJ‑0478:712:GW2002102894th:2:1215:21093:52109/144‑1 (MQ=60)
CCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGC > GWNJ‑0478:712:GW2002102894th:2:1209:1724:30277/1‑150 (MQ=60)
GTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttg > GWNJ‑0478:712:GW2002102894th:2:2207:16210:19477/1‑83 (MQ=60)
GTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCG > GWNJ‑0478:712:GW2002102894th:2:1115:5047:77031/1‑150 (MQ=60)
ACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCGCG > GWNJ‑0478:712:GW2002102894th:2:1214:4758:83189/1‑150 (MQ=60)
GTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCAAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCGCGAGGC > GWNJ‑0478:712:GW2002102894th:2:1214:12273:56405/1‑149 (MQ=60)
GGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCGCGActgtctcttatac > GWNJ‑0478:712:GW2002102894th:2:2114:1492:63745/1‑137 (MQ=60)
CCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCGCGAGGCACAGGATGCGTA < GWNJ‑0478:712:GW2002102894th:2:1201:6782:25810/150‑1 (MQ=60)
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GGCCACCACTATCAGCAAGATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGATACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCGCGAGGCACAGGATGCGTA > AM260480/433042‑433335
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
