Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
154 |
26.6 |
2069536 |
90.2% |
1866721 |
108.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260480 |
433,189 |
A→C |
R133R (CGA→CGC) |
h16_B0381 → |
Acetyl‑CoA acetyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260480 | 433,189 | 0 | A | C | 100.0%
| 166.6
/ NA
| 43 | R133R (CGA→CGC) | h16_B0381 | Acetyl‑CoA acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (22/21); total (22/21) |
GATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGATACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCGC > AM260480/433060‑433318
|
gATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACg < 1:896875/134‑1 (MQ=255)
tgtgCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGc > 1:261316/1‑134 (MQ=255)
tgCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTa > 2:498986/1‑134 (MQ=255)
cGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCtt > 1:682273/1‑134 (MQ=255)
cATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTAcc < 2:622/125‑1 (MQ=255)
cATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTAcc > 1:622/1‑125 (MQ=255)
aTGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCa > 2:87105/1‑134 (MQ=255)
aTGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCa > 1:766882/1‑134 (MQ=255)
tGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTc < 2:682273/134‑1 (MQ=255)
tGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTc < 1:498986/134‑1 (MQ=255)
aTGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCt < 2:766882/134‑1 (MQ=255)
aTGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCt > 2:676763/1‑134 (MQ=255)
aTGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCt < 1:87105/134‑1 (MQ=255)
ccTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACt < 2:185791/134‑1 (MQ=255)
gCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTg < 1:990826/121‑1 (MQ=255)
gCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTg > 2:990826/1‑121 (MQ=255)
gtggcggtggcgGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGa < 2:261316/134‑1 (MQ=255)
tggcggtggcggGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGaa < 1:34850/134‑1 (MQ=255)
ggtggcggGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGAc < 1:258539/94‑1 (MQ=255)
ggtggcggGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGAc > 2:258539/1‑94 (MQ=255)
gcggcATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCAc > 1:337073/1‑71 (MQ=255)
gcggcATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCAc < 2:337073/71‑1 (MQ=255)
gcATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGt < 1:122629/75‑1 (MQ=255)
gcATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGt > 2:122629/1‑75 (MQ=255)
ccAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTc > 1:357778/1‑134 (MQ=255)
ccGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGa < 1:676763/134‑1 (MQ=255)
cccGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCa > 1:139256/1‑134 (MQ=255)
cgcgcgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCt < 2:328145/91‑1 (MQ=255)
cgcgcgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCt > 1:328145/1‑91 (MQ=255)
gcgcgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGa > 1:392927/1‑45 (MQ=255)
gcgcgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGa < 2:392927/45‑1 (MQ=255)
gcgcgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAg < 2:1033538/121‑1 (MQ=255)
gcgcgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAg > 1:1033538/1‑121 (MQ=255)
gcgcgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATgg > 2:172322/1‑134 (MQ=255)
gcgcgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATgg > 2:572051/1‑134 (MQ=255)
cgcgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCa < 2:421612/86‑1 (MQ=255)
cgcgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCa > 1:421612/1‑86 (MQ=255)
cgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGcc > 1:451554/1‑134 (MQ=255)
cgGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGcc > 2:405985/1‑134 (MQ=255)
gCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAg > 2:523811/1‑78 (MQ=255)
gCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAg < 1:523811/78‑1 (MQ=255)
gCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCcgc < 1:572051/134‑1 (MQ=255)
gCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCcgc < 2:357778/134‑1 (MQ=255)
|
GATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGATACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCGC > AM260480/433060‑433318
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCACTATCAGCAAGATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGATACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCGCGAGGCACAGGATGCGTA > AM260480/433047‑433335
|
CCACTATCAGCAAGATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCT > GWNJ‑0478:712:GW2002102894th:2:1201:16234:42705/1‑150 (MQ=60)
GCAAGATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTG > GWNJ‑0478:712:GW2002102894th:2:2110:7456:78020/1‑150 (MQ=60)
AGATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGC < GWNJ‑0478:712:GW2002102894th:2:2208:10649:14163/150‑1 (MQ=60)
GATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGC > GWNJ‑0478:712:GW2002102894th:2:1101:12218:6107/1‑149 (MQ=60)
ATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCAC > GWNJ‑0478:712:GW2002102894th:2:2116:20279:63243/1‑150 (MQ=60)
gatgtagctccgtctcgtgggctcggagatgtgtataagagacaGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGT < GWNJ‑0478:712:GW2002102894th:2:1109:17834:20834/106‑1 (MQ=60)
GTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTAC < GWNJ‑0478:712:GW2002102894th:2:1214:11474:88404/150‑1 (MQ=60)
GATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTG < GWNJ‑0478:712:GW2002102894th:2:1107:2294:93802/150‑1 (MQ=60)
ggctcggagatgtgtataagagacaGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGAC < GWNJ‑0478:712:GW2002102894th:2:1201:20582:23519/125‑1 (MQ=60)
CCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGA < GWNJ‑0478:712:GW2002102894th:2:2214:16126:60238/150‑1 (MQ=60)
ACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCtgtctcttatacacatctccgagcccacgagacggagctacatctcgt > GWNJ‑0478:712:GW2002102894th:2:1207:16256:58030/1‑102 (MQ=60)
GTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGC < GWNJ‑0478:712:GW2002102894th:2:1105:18975:42981/150‑1 (MQ=60)
gtagctccgtctcgtgggctcggagatgtgtataagagacagACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCT < GWNJ‑0478:712:GW2002102894th:2:2101:19184:38080/108‑1 (MQ=60)
GCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCG > GWNJ‑0478:712:GW2002102894th:2:1206:7216:87307/1‑150 (MQ=60)
CGCGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCAT > GWNJ‑0478:712:GW2002102894th:2:1111:10086:21870/1‑150 (MQ=60)
CGCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCctgtctcttatacacatctccgagcccac > GWNJ‑0478:712:GW2002102894th:2:1204:1440:100592/1‑121 (MQ=60)
GCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACtgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:1211:13507:2612/1‑76 (MQ=60)
GCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGG > GWNJ‑0478:712:GW2002102894th:2:2216:4597:94345/1‑150 (MQ=60)
GCCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGG < GWNJ‑0478:712:GW2002102894th:2:2110:9900:45585/150‑1 (MQ=60)
CCGTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACtgtctcttatacacatctccgagcccacgagac > GWNJ‑0478:712:GW2002102894th:2:1210:7264:65316/1‑117 (MQ=60)
GTACATCGTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCG > GWNJ‑0478:712:GW2002102894th:2:1212:16574:35392/1‑150 (MQ=60)
GTCCCGCGCGGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCGCGAGGC > GWNJ‑0478:712:GW2002102894th:2:2205:1535:65861/1‑149 (MQ=60)
GGCCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCGCGAGGCACAGGATGCG < GWNJ‑0478:712:GW2002102894th:2:2105:9259:80184/150‑1 (MQ=60)
CCGCTACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCGCGAGGCACAGGATGCGTA < GWNJ‑0478:712:GW2002102894th:2:2106:19811:97514/150‑1 (MQ=60)
|
CCACTATCAGCAAGATGTGCGGCTCGGCCATGAAGTCCGTGATGCTCGCGCATGACCTGCTGCTTGCCGGCACCTGCAACGTGGCGGTGGCGGGCGGCATGGAGTCGATGACCAACGCGCCGTACATCGTCCCGCGCGGCCGATACGGCTACCGCCTTGGGCACGGCCAGTTCCTCGACCACATGTACTGCGACGGGCTGGAGGACGCCTACGAAGGCCACCTGATGGGCTACTACGCAGACCTCGCCGCCGAGGCGCGCGGCATGGGCCGCGAGGCACAGGATGCGTA > AM260480/433047‑433335
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
