Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
154 |
26.6 |
2069536 |
90.2% |
1866721 |
108.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260479 |
787,882 |
+T |
intergenic (‑662/+630) |
h16_A0728 ← / ← h16_A0729 |
response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260479 | 787,879 | 1 | . | T | 100.0%
| 140.6
/ NA
| 38 | intergenic (‑659/+633) | h16_A0728/h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (18/20); total (18/20) |
TCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAGTGCGTG > AM260479/787747‑788006
|
tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAaggaaaaggaaa > 1:163130/1‑134 (MQ=255)
cGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑t > 2:229262/1‑134 (MQ=255)
cGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑tttt < 2:189820/134‑2 (MQ=255)
cGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTg > 2:410630/1‑134 (MQ=255)
cGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCt < 1:410630/134‑1 (MQ=255)
ggTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGa < 2:163130/133‑1 (MQ=255)
ccTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTcc < 2:800003/131‑1 (MQ=255)
ccTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTcc > 1:800003/1‑131 (MQ=255)
ccTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCt > 2:473873/1‑134 (MQ=255)
gCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACAt > 1:868147/1‑134 (MQ=255)
tCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGtt > 2:981867/1‑116 (MQ=255)
tCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGtt < 1:981867/116‑1 (MQ=255)
tCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTg > 2:436880/1‑134 (MQ=255)
ttCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg < 1:229262/133‑1 (MQ=255)
ttCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg < 1:870192/133‑1 (MQ=255)
ttCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg < 1:473873/133‑1 (MQ=255)
tCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTc > 2:644823/1‑118 (MQ=255)
tCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTc < 1:644823/118‑1 (MQ=255)
tCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCgg > 1:936237/1‑133 (MQ=255)
aCATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTg < 1:330153/121‑1 (MQ=255)
aCATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTg > 2:330153/1‑121 (MQ=255)
aaCGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTg > 1:336926/1‑74 (MQ=255)
aaCGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTg < 2:336926/74‑1 (MQ=255)
cGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCAtt > 1:956386/1‑134 (MQ=255)
ggCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑tttt < 2:398177/37‑2 (MQ=255)
ggCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑tttt > 1:398177/1‑36 (MQ=255)
aaTCCTTTGATAACAAAAGGTAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTTCGCTACTGATACATCTGGCg > 1:662971/1‑92 (MQ=255)
aaTCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg < 2:662971/92‑1 (MQ=255)
aTCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAAtt < 2:924436/133‑1 (MQ=255)
tCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg < 1:436880/134‑1 (MQ=255)
tCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg < 2:936237/134‑1 (MQ=255)
tCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg < 2:868147/134‑1 (MQ=255)
tCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATGTCTATATTGCAGCGCAGCATTCGACGAGCGGGTAATTAg > 1:641512/1‑134 (MQ=255)
tttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGc > 1:347264/1‑117 (MQ=255)
tttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGc < 2:347264/117‑1 (MQ=255)
ttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGAtt < 2:707256/91‑1 (MQ=255)
ttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGAtt > 1:707256/1‑91 (MQ=255)
ttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAg > 2:619977/1‑119 (MQ=255)
ttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAg < 1:619977/119‑1 (MQ=255)
tGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGgcg < 2:641512/132‑1 (MQ=255)
tAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGgc < 1:981611/128‑1 (MQ=255)
tAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGgc > 2:981611/1‑128 (MQ=255)
aaCAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGa > 1:487655/1‑134 (MQ=255)
aggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAGTGCGTg > 2:869085/1‑134 (MQ=255)
|
TCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAGTGCGTG > AM260479/787747‑788006
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAGTG > AM260479/787747‑788002
|
TCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCC < GWNJ‑0478:712:GW2002102894th:2:2111:15766:72882/147‑1 (MQ=60)
gcctccatttcttcttttttttttttttcaagcagaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGG < GWNJ‑0478:712:GW2002102894th:2:2109:1905:11856/56‑1 (MQ=60)
tttttttttttcaagcagtagcctgtatttttttttttcaagcagaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGC < GWNJ‑0478:712:GW2002102894th:2:2208:11780:34334/45‑1 (MQ=60)
CCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGT < GWNJ‑0478:712:GW2002102894th:2:1210:2652:2748/150‑1 (MQ=60)
GGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTT > GWNJ‑0478:712:GW2002102894th:2:2203:21211:86700/1‑150 (MQ=60)
acagCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACAT < GWNJ‑0478:712:GW2002102894th:2:2214:5942:11487/146‑1 (MQ=60)
GTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATC > GWNJ‑0478:712:GW2002102894th:2:2206:16021:33031/1‑150 (MQ=60)
agGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGG < GWNJ‑0478:712:GW2002102894th:2:2109:1963:56111/148‑1 (MQ=60)
GTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGG > GWNJ‑0478:712:GW2002102894th:2:2210:11933:51088/1‑149 (MQ=60)
aagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTAT < GWNJ‑0478:712:GW2002102894th:2:2209:18325:67715/91‑1 (MQ=60)
acggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagTAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATAT < GWNJ‑0478:712:GW2002102894th:2:1206:17825:93641/94‑1 (MQ=60)
TCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATAT < GWNJ‑0478:712:GW2002102894th:2:1207:20257:14640/149‑1 (MQ=60)
GTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGC < GWNJ‑0478:712:GW2002102894th:2:1215:6595:54140/149‑1 (MQ=60)
GTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGC < GWNJ‑0478:712:GW2002102894th:2:2206:3017:46885/149‑1 (MQ=60)
GTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGC < GWNJ‑0478:712:GW2002102894th:2:1114:9991:44703/149‑1 (MQ=60)
GACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTcctgtctcttatacacatctccgagcccacgagacggagctacatct > GWNJ‑0478:712:GW2002102894th:2:1207:10931:57340/1‑103 (MQ=60)
CATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTC > GWNJ‑0478:712:GW2002102894th:2:2212:15268:68676/1‑150 (MQ=60)
GAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:1211:2676:32141/1‑67 (MQ=60)
GTGCCAGATATGGCTAATCCTTTGATAACAAAAGGTAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTTCGCTACTGATACATCTGGCGGGATTTCTATATTGCctgtctcttatacacatctccgagccc > GWNJ‑0478:712:GW2002102894th:2:2111:10013:63556/1‑122 (MQ=60)
GCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATGTCTATATTGCAGCGCAGCATTCGACGAGCGGGTAATTAGG > GWNJ‑0478:712:GW2002102894th:2:2109:1525:36354/1‑150 (MQ=60)
GGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGC < GWNJ‑0478:712:GW2002102894th:2:2106:12743:99303/150‑1 (MQ=60)
AGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCtg > GWNJ‑0478:712:GW2002102894th:2:1206:2508:21324/1‑148 (MQ=60)
GATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCctgtctcttatacacatctccgagcccac > GWNJ‑0478:712:GW2002102894th:2:2112:4488:24410/1‑121 (MQ=60)
GGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaagtcgaggaaggatatgacaacg > GWNJ‑0478:712:GW2002102894th:2:1105:6665:82164/1‑52 (MQ=60)
GGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGAT > GWNJ‑0478:712:GW2002102894th:2:1214:20837:26309/1‑150 (MQ=60)
ATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAG < GWNJ‑0478:712:GW2002102894th:2:1213:2382:52326/150‑1 (MQ=60)
CCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAGTG < GWNJ‑0478:712:GW2002102894th:2:2214:15496:9778/150‑1 (MQ=60)
|
TCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAGTG > AM260479/787747‑788002
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
