Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
149 |
26.7 |
2337422 |
87.5% |
2045244 |
105.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260479 |
787,882 |
+T |
intergenic (‑662/+630) |
h16_A0728 ← / ← h16_A0729 |
response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260479 | 787,879 | 1 | . | T | 100.0%
| 129.8
/ NA
| 34 | intergenic (‑659/+633) | h16_A0728/h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (15/19); total (15/19) |
TCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAGTGCGTG > AM260479/787747‑788006
|
tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAaggaaaaggaaa > 1:955353/1‑134 (MQ=255)
ccGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCt < 2:518166/134‑1 (MQ=255)
cGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTg > 1:647221/1‑134 (MQ=255)
ttgCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAAt > 2:505899/2‑134 (MQ=255)
cGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCt < 1:994918/134‑1 (MQ=255)
cGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCt < 2:499159/134‑1 (MQ=255)
cGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCt > 2:994918/1‑134 (MQ=255)
ggTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCt > 2:738181/1‑111 (MQ=255)
ggTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCt < 1:738181/111‑1 (MQ=255)
gTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGtt < 2:873472/134‑1 (MQ=255)
ccccTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTcc < 2:955353/133‑1 (MQ=255)
cTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCtt > 1:252581/1‑134 (MQ=255)
cTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTg < 1:843939/133‑1 (MQ=255)
tCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCt < 2:787338/78‑1 (MQ=255)
tCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCt > 1:787338/1‑78 (MQ=255)
aaCGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAAtt < 1:464867/70‑1 (MQ=255)
aaCGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAAtt > 2:464867/1‑70 (MQ=255)
aaCGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTcc < 2:221784/91‑1 (MQ=255)
aaCGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTcc > 1:221784/1‑91 (MQ=255)
aaCGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATc > 2:239753/1‑105 (MQ=255)
aaCGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATc < 1:239753/105‑1 (MQ=255)
aaCGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCgcagca > 2:983668/1‑134 (MQ=255)
cGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg < 2:501645/108‑1 (MQ=255)
cGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg > 1:501645/1‑108 (MQ=255)
tGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCg > 2:989952/1‑134 (MQ=255)
gCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGc < 2:241751/104‑1 (MQ=255)
gCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGc > 1:241751/1‑104 (MQ=255)
aTCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAAtt < 2:647221/133‑1 (MQ=255)
tCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg < 1:989952/134‑1 (MQ=255)
tCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg < 2:252581/134‑1 (MQ=255)
tCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg < 1:983668/134‑1 (MQ=255)
ttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGAt > 2:266509/1‑76 (MQ=255)
ttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGAt < 1:266509/76‑1 (MQ=255)
ttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCg > 1:1013066/1‑114 (MQ=255)
ttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCg < 2:1013066/114‑1 (MQ=255)
aggaaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATc < 2:910481/70‑1 (MQ=255)
aggaaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATc > 1:910481/1‑70 (MQ=255)
aggaaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg > 2:616650/1‑75 (MQ=255)
aggaaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg < 1:616650/75‑1 (MQ=255)
aggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCg < 1:506160/97‑1 (MQ=255)
aggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCg > 2:506160/1‑97 (MQ=255)
aggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAGTGCGTg > 2:429362/1‑134 (MQ=255)
|
TCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAGTGCGTG > AM260479/787747‑788006
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACTGATCTTCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAG > AM260479/787739‑788000
|
gtgtataagagacagACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGC < GWNJ‑0478:712:GW2002102894th:2:2116:18387:26234/135‑1 (MQ=60)
GATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGG > GWNJ‑0478:712:GW2002102894th:2:2104:9538:50946/1‑150 (MQ=60)
aagagacaggtgtgtTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTG < GWNJ‑0478:712:GW2002102894th:2:2111:7700:61790/135‑1 (MQ=60)
acgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAA < GWNJ‑0478:712:GW2002102894th:2:1210:3920:71813/101‑1 (MQ=60)
CCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGT < GWNJ‑0478:712:GW2002102894th:2:2207:6941:48744/150‑1 (MQ=60)
GTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTC > GWNJ‑0478:712:GW2002102894th:2:1114:17766:44046/1‑150 (MQ=60)
tttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagCAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACA < GWNJ‑0478:712:GW2002102894th:2:2112:17534:24765/72‑1 (MQ=60)
GTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGtctcttatacacatctccgagcccacgagacactcgct > GWNJ‑0478:712:GW2002102894th:2:2112:11224:11965/1‑111 (MQ=60)
attagcgagtgtctcgtgggctcggagatgtgtataagagacagGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATT < GWNJ‑0478:712:GW2002102894th:2:1116:12230:12887/106‑1 (MQ=60)
gtgtataagagacaGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTAT < GWNJ‑0478:712:GW2002102894th:2:1115:10584:79934/136‑1 (MQ=60)
tttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTAT < GWNJ‑0478:712:GW2002102894th:2:2116:19123:11495/72‑1 (MQ=60)
TCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATAT < GWNJ‑0478:712:GW2002102894th:2:2114:18926:81699/149‑1 (MQ=60)
gattagcgagtgtctcgtgggctcggagatgtgtataagagacagTCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGC < GWNJ‑0478:712:GW2002102894th:2:2102:4422:69181/105‑1 (MQ=60)
GACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTctgtctcttatacacatctccgagcccac > GWNJ‑0478:712:GW2002102894th:2:1112:9066:91316/1‑121 (MQ=60)
CATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCctgtctcttat > GWNJ‑0478:712:GW2002102894th:2:1212:6931:56957/1‑138 (MQ=60)
ATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCtgtctcttatacac > GWNJ‑0478:712:GW2002102894th:2:1115:2990:89169/1‑135 (MQ=60)
cggagatgtgtataagagacagGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTA < GWNJ‑0478:712:GW2002102894th:2:1212:4492:80073/127‑1 (MQ=60)
GATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTActgtct > GWNJ‑0478:712:GW2002102894th:2:2208:7474:50249/1‑144 (MQ=60)
ATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAG < GWNJ‑0478:712:GW2002102894th:2:2206:8444:84277/150‑1 (MQ=60)
ATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAG < GWNJ‑0478:712:GW2002102894th:2:2207:6024:20769/150‑1 (MQ=60)
TCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATctgtctcttatacacatctccgagcccacgagacactcgctaatctcgt > GWNJ‑0478:712:GW2002102894th:2:2202:13031:57305/1‑100 (MQ=60)
|
ACTGATCTTCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAG > AM260479/787739‑788000
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
