Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
154 |
26.6 |
2069536 |
90.2% |
1866721 |
108.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260479 |
3,905,524 |
G→C |
A1285G (GCC→GGC) |
putA ← |
bifunctional proline dehydrogenase and proline oxidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260479 | 3,905,524 | 0 | G | C | 100.0%
| 163.0
/ NA
| 42 | A1285G (GCC→GGC) | putA | bifunctional proline dehydrogenase and proline oxidase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (15/27); total (15/27) |
AGGGTTGCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGGCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGTCGGCCACCAT > AM260479/3905403‑3905651
|
aGGGTTGCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCga < 2:34563/134‑1 (MQ=255)
ttGCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCgatgat > 2:955145/1‑134 (MQ=255)
ttGCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCgatgat < 2:466246/134‑1 (MQ=255)
gCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATc < 2:254026/133‑1 (MQ=255)
gATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGgc < 2:884682/134‑1 (MQ=255)
catcaAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCg > 2:438402/1‑134 (MQ=255)
catcaAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCg > 1:798694/1‑134 (MQ=255)
atcaAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc < 1:147566/134‑1 (MQ=255)
atcaAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc < 2:257686/134‑1 (MQ=255)
aaaCTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCa < 2:798694/133‑1 (MQ=255)
tGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCa < 1:171170/123‑1 (MQ=255)
tGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCa > 2:171170/1‑123 (MQ=255)
cccgcGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCg > 2:912790/1‑126 (MQ=255)
cccgcGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCg < 1:912790/126‑1 (MQ=255)
cTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGc < 1:180826/134‑1 (MQ=255)
tgtTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCg < 1:533222/134‑1 (MQ=255)
aCCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc < 1:955145/134‑1 (MQ=255)
aCCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc < 2:319072/134‑1 (MQ=255)
aCCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc < 2:313852/134‑1 (MQ=255)
aCCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc < 2:313829/134‑1 (MQ=255)
gAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTcc > 1:703510/1‑134 (MQ=255)
gcgcTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTgc > 2:591415/1‑107 (MQ=255)
gcgcTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTgc < 1:591415/107‑1 (MQ=255)
gcgcTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTgca < 1:978202/134‑1 (MQ=255)
cAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc > 2:245438/1‑75 (MQ=255)
cAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc < 1:245438/75‑1 (MQ=255)
aGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTc > 2:710070/1‑134 (MQ=255)
atatTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCcgccgc < 1:65983/134‑1 (MQ=255)
ttCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc < 2:299231/92‑1 (MQ=255)
ttCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc > 1:299231/1‑92 (MQ=255)
ttCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGt < 1:578025/134‑1 (MQ=255)
ttCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGt < 2:1006462/134‑1 (MQ=255)
tGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCa < 2:842002/46‑1 (MQ=255)
tGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCa > 1:842002/1‑46 (MQ=255)
tGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCa > 1:406395/1‑46 (MQ=255)
tGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCa < 2:406395/46‑1 (MQ=255)
cgcCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc < 2:8646/42‑1 (MQ=255)
cgcCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGc > 1:8646/1‑42 (MQ=255)
cgcCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc < 2:17798/78‑1 (MQ=255)
cgcCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAtc > 1:17798/1‑78 (MQ=255)
cgcCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGTCGGccacca > 1:937948/1‑134 (MQ=255)
gcCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGTCGGCCACCAt < 2:703510/134‑1 (MQ=255)
|
AGGGTTGCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGGCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGTCGGCCACCAT > AM260479/3905403‑3905651
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGGCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGTCGGCCACCATGCGGACGCGCGATTGTACGC > AM260479/3905409‑3905671
|
GCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGC > GWNJ‑0478:712:GW2002102894th:2:2203:19290:78174/1‑150 (MQ=60)
gatgtagctccgtctcgtgggctcggagatgtgtataagagacAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACAC < GWNJ‑0478:712:GW2002102894th:2:1116:16121:37086/107‑1 (MQ=60)
CATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACAC < GWNJ‑0478:712:GW2002102894th:2:1111:19918:70892/150‑1 (MQ=60)
CAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCG < GWNJ‑0478:712:GW2002102894th:2:1113:19044:11213/149‑1 (MQ=60)
GCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGC < GWNJ‑0478:712:GW2002102894th:2:2211:16390:13580/150‑1 (MQ=60)
gtataagagacagGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAAT < GWNJ‑0478:712:GW2002102894th:2:2107:5992:13308/137‑1 (MQ=60)
tcgagcgcgatattcggttcaccttgGCGCTCGATCAGCAAACGGTTCCGGAAGGCCGGCCGGAATTAATTTTCCGGGGTTTTCCAACCCCTTTTGGCCGGCCCCAAGGGGCCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCT < GWNJ‑0478:712:GW2002102894th:2:2215:1410:45613/8‑4294967181 (MQ=60)
GCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCG < GWNJ‑0478:712:GW2002102894th:2:1113:13416:66257/150‑1 (MQ=60)
GCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCG > GWNJ‑0478:712:GW2002102894th:2:2113:8481:100904/1‑150 (MQ=60)
GTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGC < GWNJ‑0478:712:GW2002102894th:2:2103:17405:4098/150‑1 (MQ=60)
GACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCAC < GWNJ‑0478:712:GW2002102894th:2:2212:8454:61661/150‑1 (MQ=60)
AGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAG < GWNJ‑0478:712:GW2002102894th:2:2213:20905:90146/150‑1 (MQ=60)
ATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtc > GWNJ‑0478:712:GW2002102894th:2:2109:3717:101235/1‑93 (MQ=60)
CGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCtgtctcttatacacatctccgagccc > GWNJ‑0478:712:GW2002102894th:2:1205:18032:10388/1‑123 (MQ=60)
GATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGTCGGCCAC < GWNJ‑0478:712:GW2002102894th:2:1104:9897:56958/150‑1 (MQ=60)
ATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:1211:17745:77976/1‑76 (MQ=60)
ATATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:2205:16077:68100/1‑76 (MQ=60)
ATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCtgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:1101:9509:63882/1‑73 (MQ=60)
ATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCtgtctcttatatacatctccgagcccacgagacggagctac > GWNJ‑0478:712:GW2002102894th:2:1103:4363:28552/1‑109 (MQ=60)
ATTCGGTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGTCGGCCACCAT > GWNJ‑0478:712:GW2002102894th:2:2210:8479:61418/1‑150 (MQ=60)
GTTCACCTTGCGCCAGGCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGTCGGCCACCATGCGGA < GWNJ‑0478:712:GW2002102894th:2:2104:21237:22660/150‑1 (MQ=60)
GCCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaaaatgcagaaaggctatcgacacct > GWNJ‑0478:712:GW2002102894th:2:1213:8987:76555/1‑44 (MQ=60)
|
GCCTCAGCCGATCGTCATCAAACTGGCATTGCCGCCCGCGGCTGCGGTGTTGACCGAAAGCGAGCGCTCGATCAGCAAACGGTCGAGCGCGATATTCGGTTCACCTTGCGCCAGGGCCTGCACGCCGATGATCGGACCGGGGCGCACCGCCACCTGCTCGCACACCGTGCGCAGCTGGTCGGAATCTCCGTGGTGCAGCACCGCATCGATAGCGATGTCCGCCGCGGTCCAGTCGGCCACCATGCGGACGCGCGATTGTACGC > AM260479/3905409‑3905671
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
