Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
149 |
26.7 |
2337422 |
87.5% |
2045244 |
105.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260479 |
3,972,184 |
+C |
intergenic (‑136/‑395) |
h16_A3682 ← / → h16_A3683 |
putative methyltransferase/Hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260479 | 3,972,182 | 1 | . | C | 100.0%
| 157.9
/ NA
| 41 | intergenic (‑134/‑397) | h16_A3682/h16_A3683 | putative methyltransferase/Hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (20/21); total (20/21) |
TGCCTTTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATG > AM260479/3972050‑3972300
|
tGCCTTTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑c > 1:746605/1‑134 (MQ=255)
tGCCTTTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑c > 1:206354/1‑134 (MQ=255)
gTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc < 1:1094248/134‑1 (MQ=255)
gTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc < 2:206354/134‑1 (MQ=255)
gTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc < 2:746605/134‑1 (MQ=255)
cTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt < 2:808186/134‑1 (MQ=255)
tcgCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGa > 2:931947/1‑133 (MQ=255)
tGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt < 1:645186/125‑1 (MQ=255)
tGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt > 2:645186/1‑125 (MQ=255)
ccTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACgg > 2:1026907/1‑133 (MQ=255)
ccgTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc > 2:70667/1‑94 (MQ=255)
ccgTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc < 1:70667/94‑1 (MQ=255)
ccgTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgc < 1:525289/134‑1 (MQ=255)
ggCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGccc < 2:917472/134‑1 (MQ=255)
aTCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTAc > 2:397724/1‑134 (MQ=255)
tCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACg < 1:397724/134‑1 (MQ=255)
gggATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACg < 2:676022/67‑1 (MQ=255)
gggATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACg > 1:676022/1‑67 (MQ=255)
ggTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTa < 1:762172/118‑1 (MQ=255)
ggTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTa > 2:762172/1‑118 (MQ=255)
tGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCg < 1:739694/132‑1 (MQ=255)
tGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCg > 2:739694/1‑132 (MQ=255)
tGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGcc > 2:215065/1‑134 (MQ=255)
tGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGcc > 1:338348/1‑134 (MQ=255)
acacCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACa < 1:215065/133‑1 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc < 2:1118930/36‑1 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc > 1:1118930/1‑36 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCt < 1:100707/115‑1 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCt > 2:100707/1‑115 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAg > 2:695002/1‑130 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAg < 1:695002/130‑1 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc > 2:683897/1‑35 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc < 1:683897/35‑1 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGa > 2:506010/1‑77 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGa < 1:506010/77‑1 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGAGACGACCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCAcgc > 2:462936/1‑134 (MQ=255)
ttCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt < 2:479283/36‑1 (MQ=255)
ttCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt > 1:479283/1‑36 (MQ=255)
ccGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGAt > 1:813968/1‑134 (MQ=255)
ccGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGAt > 2:76726/1‑134 (MQ=255)
ccGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGAt > 1:930160/1‑134 (MQ=255)
aCCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGAtg < 2:813968/134‑1 (MQ=255)
aCCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGAtg < 2:338348/134‑1 (MQ=255)
aCCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGAtg < 2:930160/134‑1 (MQ=255)
aCCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGAtg > 2:958563/1‑134 (MQ=255)
|
TGCCTTTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATG > AM260479/3972050‑3972300
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCTTGTCCGCCATTTGCCTTTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACA‑CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGG > AM260479/3972035‑3972324
|
GCCTTGTCCGCCATTTGCCTTTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACA‑CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CC > GWNJ‑0478:712:GW2002102894th:2:1112:7899:10691/1‑150 (MQ=60)
GCCTTGTCCGCCATTTGCCTTTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACA‑CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CC > GWNJ‑0478:712:GW2002102894th:2:2110:15816:4698/1‑150 (MQ=60)
caagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACA‑CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCC < GWNJ‑0478:712:GW2002102894th:2:2109:8609:4551/83‑1 (MQ=60)
ggctcggagatgtgtataagagacagGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACA‑CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATAC < GWNJ‑0478:712:GW2002102894th:2:1104:5534:51135/124‑1 (MQ=60)
CGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACA‑CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATAC < GWNJ‑0478:712:GW2002102894th:2:2213:3863:67915/150‑1 (MQ=60)
ttttctttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATAC < GWNJ‑0478:712:GW2002102894th:2:2106:15346:65577/65‑1 (MQ=60)
GCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACA‑CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGC < GWNJ‑0478:712:GW2002102894th:2:2104:19632:38470/150‑1 (MQ=60)
GCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACA‑CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGT < GWNJ‑0478:712:GW2002102894th:2:1215:19243:68184/150‑1 (MQ=60)
ttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaggtatacgcCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTC < GWNJ‑0478:712:GW2002102894th:2:2213:16663:29376/65‑1 (MQ=60)
GTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACA‑CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgc > GWNJ‑0478:712:GW2002102894th:2:2106:8410:17139/1‑97 (MQ=60)
tagcgagtgtctcgtgggctcggagatgtgtataagagacagGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCC < GWNJ‑0478:712:GW2002102894th:2:1212:3283:79311/107‑1 (MQ=60)
AGATCGGGGATGATACCGGTGCAACCGTGACA‑CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGG < GWNJ‑0478:712:GW2002102894th:2:2110:15964:85362/150‑1 (MQ=60)
cagaagacggcatacgaggttagcgagtgtctcgtgggctcggagatgtgtataagagacagACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGA < GWNJ‑0478:712:GW2002102894th:2:2209:20835:65471/88‑1 (MQ=60)
ATCGGGGATGATACCGGTGCAACCGTGACA‑CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGAT < GWNJ‑0478:712:GW2002102894th:2:1208:12877:6108/150‑1 (MQ=60)
ATACCGGTGCAACCGTGACA‑CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCT > GWNJ‑0478:712:GW2002102894th:2:1205:17223:47584/1‑150 (MQ=60)
ggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaggtatacgcCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCT < GWNJ‑0478:712:GW2002102894th:2:2109:15693:73889/88‑1 (MQ=60)
cggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaggcCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAAC < GWNJ‑0478:712:GW2002102894th:2:1208:7613:76092/93‑1 (MQ=60)
attagcgagtgtctcgtgggctcggagatgtgtataagagacaggtatacgcCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGG < GWNJ‑0478:712:GW2002102894th:2:1215:3763:3162/98‑1 (MQ=60)
CCGTGACA‑CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGAC < GWNJ‑0478:712:GW2002102894th:2:2111:7246:69399/150‑1 (MQ=60)
GACAGCGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAG < GWNJ‑0478:712:GW2002102894th:2:1106:11769:28593/150‑1 (MQ=60)
CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:2214:4932:83140/1‑66 (MQ=60)
ATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:1213:9548:45345/1‑66 (MQ=60)
ACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATT > GWNJ‑0478:712:GW2002102894th:2:2115:5437:41426/1‑150 (MQ=60)
ACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATT > GWNJ‑0478:712:GW2002102894th:2:2204:12264:78012/1‑150 (MQ=60)
AACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGA < GWNJ‑0478:712:GW2002102894th:2:1112:8015:57132/149‑1 (MQ=60)
ACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATG < GWNJ‑0478:712:GW2002102894th:2:2108:17727:30445/150‑1 (MQ=60)
gtgtataagagacagACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGC < GWNJ‑0478:712:GW2002102894th:2:2112:2933:91041/134‑1 (MQ=60)
aagagacaggtatacgcCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGC < GWNJ‑0478:712:GW2002102894th:2:1103:9951:84799/133‑1 (MQ=60)
TCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGC > GWNJ‑0478:712:GW2002102894th:2:2111:10100:36128/1‑150 (MQ=60)
CACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACctgtctcttatacacatctccgagcccacgagacactcgctaatc > GWNJ‑0478:712:GW2002102894th:2:2205:9919:43053/1‑105 (MQ=60)
CCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATG > GWNJ‑0478:712:GW2002102894th:2:1213:12824:10199/1‑150 (MQ=60)
GTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaacatagaccgtaaggaacgagaaa > GWNJ‑0478:712:GW2002102894th:2:1205:2678:77202/1‑46 (MQ=60)
GTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:1209:8183:84105/1‑74 (MQ=60)
GTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGctgtctcttatacacatctccg > GWNJ‑0478:712:GW2002102894th:2:2114:11439:85602/1‑126 (MQ=60)
GTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGG > GWNJ‑0478:712:GW2002102894th:2:2202:5280:80022/1‑150 (MQ=60)
GTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGG > GWNJ‑0478:712:GW2002102894th:2:2112:9102:71966/1‑150 (MQ=60)
GTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGG > GWNJ‑0478:712:GW2002102894th:2:2103:1851:49725/1‑150 (MQ=60)
GTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGG > GWNJ‑0478:712:GW2002102894th:2:2104:5128:19389/1‑150 (MQ=60)
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GCCTTGTCCGCCATTTGCCTTTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACA‑CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGG > AM260479/3972035‑3972324
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
