Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
154 |
26.6 |
2069536 |
90.2% |
1866721 |
108.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260479 |
3,972,184 |
+C |
intergenic (‑136/‑395) |
h16_A3682 ← / → h16_A3683 |
putative methyltransferase/Hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260479 | 3,972,182 | 1 | . | C | 100.0%
| 175.4
/ NA
| 45 | intergenic (‑134/‑397) | h16_A3682/h16_A3683 | putative methyltransferase/Hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (24/21); total (24/21) |
CTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGC > AM260479/3972062‑3972305
|
cTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt < 2:342623/134‑1 (MQ=255)
cTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt < 2:229364/134‑1 (MQ=255)
gtcgCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTg < 1:280490/133‑1 (MQ=255)
ccTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACgg < 2:302683/133‑1 (MQ=255)
ccGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACg < 1:191868/122‑1 (MQ=255)
ccGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACg > 2:191868/1‑122 (MQ=255)
ggccgTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGcc < 2:498590/134‑1 (MQ=255)
tCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACg > 1:468837/1‑134 (MQ=255)
ggTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg < 1:356501/107‑1 (MQ=255)
ggTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg > 2:356501/1‑107 (MQ=255)
cAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGtt < 1:498/60‑1 (MQ=255)
cAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGtt > 2:498/1‑60 (MQ=255)
cGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCg > 2:650817/1‑134 (MQ=255)
tGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg < 1:669329/97‑1 (MQ=255)
tGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg > 2:669329/1‑97 (MQ=255)
tGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACAGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGAt > 1:244539/1‑125 (MQ=255)
tGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACAGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGAt < 2:244539/125‑1 (MQ=255)
acGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCg > 1:460829/1‑133 (MQ=255)
ccccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc > 1:788617/1‑38 (MQ=255)
ccccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc < 2:788617/38‑1 (MQ=255)
ccccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg < 1:698119/79‑1 (MQ=255)
ccccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg > 2:698119/1‑79 (MQ=255)
ccccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGt < 2:292828/93‑1 (MQ=255)
ccccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGt > 1:292828/1‑93 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCg < 2:85736/117‑1 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCg > 1:85736/1‑117 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCAcg > 1:874144/1‑134 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCAcg > 2:412294/1‑134 (MQ=255)
ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCAcg > 2:512704/1‑134 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc > 1:167742/1‑35 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc < 2:167742/35‑1 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGtat < 1:648449/48‑1 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGtat > 2:648449/1‑48 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACgg < 1:442834/52‑1 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACgg > 2:442834/1‑52 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTcccc > 2:549306/1‑94 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTcccc < 1:549306/94‑1 (MQ=255)
cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCAcgc > 2:37735/1‑134 (MQ=255)
ttCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg > 1:730492/1‑74 (MQ=255)
ttCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg < 2:730492/74‑1 (MQ=255)
tCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt < 2:633480/35‑1 (MQ=255)
tCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt > 1:633480/1‑35 (MQ=255)
ccGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACg > 2:558912/1‑85 (MQ=255)
ccGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACg < 1:558912/85‑1 (MQ=255)
aCCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGc > 1:226084/1‑134 (MQ=255)
|
CTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGC > AM260479/3972062‑3972305
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCTTGTCCGCCATTTGCCTTTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGGGATGCC > AM260479/3972036‑3972330
|
gtgtataagagacagGCCTTTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCC < GWNJ‑0478:712:GW2002102894th:2:1202:10741:64565/135‑1 (MQ=60)
acggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCC < GWNJ‑0478:712:GW2002102894th:2:2208:16804:74018/94‑1 (MQ=60)
CCTTGTCCGCCATTTGCCTTTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCC < GWNJ‑0478:712:GW2002102894th:2:2211:4366:60427/150‑1 (MQ=60)
CCTTGTCCGCCATTTGCCTTTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCC < GWNJ‑0478:712:GW2002102894th:2:1113:1504:16892/150‑1 (MQ=60)
CCGCCATTTGCCTTTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTG < GWNJ‑0478:712:GW2002102894th:2:1104:15083:44696/150‑1 (MQ=60)
gaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacaGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTAT < GWNJ‑0478:712:GW2002102894th:2:1101:6178:5367/91‑1 (MQ=60)
taaccgagttctctgattacccagcggcctccatttttttttttcaagcagaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGC < GWNJ‑0478:712:GW2002102894th:2:2213:6319:97807/39‑1 (MQ=60)
CGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCAC < GWNJ‑0478:712:GW2002102894th:2:1203:3513:80745/149‑1 (MQ=60)
tttttcaagcagaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTC < GWNJ‑0478:712:GW2002102894th:2:2109:2211:78702/78‑1 (MQ=60)
TGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGC < GWNJ‑0478:712:GW2002102894th:2:1112:9505:32427/149‑1 (MQ=60)
tcaagcagaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCC < GWNJ‑0478:712:GW2002102894th:2:1213:13782:84296/82‑1 (MQ=60)
GCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGT > GWNJ‑0478:712:GW2002102894th:2:1215:3419:28025/1‑150 (MQ=60)
gtataagagacaGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTC < GWNJ‑0478:712:GW2002102894th:2:1206:20851:79723/138‑1 (MQ=60)
cggagatgtgtataagagacaGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTC < GWNJ‑0478:712:GW2002102894th:2:2111:7994:100058/128‑1 (MQ=60)
agctccgtctcgtgggctcggagatgtgtataagagacagCACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTC < GWNJ‑0478:712:GW2002102894th:2:2113:14230:69168/109‑1 (MQ=60)
cgtctcgtgggctcggagatgtgtataagagacagACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGAT < GWNJ‑0478:712:GW2002102894th:2:2102:10629:90120/115‑1 (MQ=60)
ggctcggagatgtgtataagagacagGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCC < GWNJ‑0478:712:GW2002102894th:2:2102:20153:17398/124‑1 (MQ=60)
ATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACAGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCT > GWNJ‑0478:712:GW2002102894th:2:1116:10473:31880/1‑150 (MQ=60)
CGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGA > GWNJ‑0478:712:GW2002102894th:2:1212:11393:86015/1‑149 (MQ=60)
GTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:2115:8645:3046/1‑75 (MQ=60)
CACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:2203:2069:10565/1‑68 (MQ=60)
CACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATActgtctcttatacacatctccgagccc > GWNJ‑0478:712:GW2002102894th:2:1202:3949:67149/1‑123 (MQ=60)
CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACtg > GWNJ‑0478:712:GW2002102894th:2:1107:5590:85103/1‑148 (MQ=60)
CGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGC > GWNJ‑0478:712:GW2002102894th:2:2206:20628:72222/1‑150 (MQ=60)
GTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaacgct > GWNJ‑0478:712:GW2002102894th:2:1110:17132:90946/1‑65 (MQ=60)
ATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaaacagggcaaac > GWNJ‑0478:712:GW2002102894th:2:2216:16490:48153/1‑63 (MQ=60)
ATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCtgtctcttatacacatctccgagcccacgagacggagctacatct > GWNJ‑0478:712:GW2002102894th:2:2115:3580:58109/1‑105 (MQ=60)
cgtgggctcggagatgtgtataagagacaggtatacgcCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGG < GWNJ‑0478:712:GW2002102894th:2:2103:18385:6466/110‑1 (MQ=60)
TACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:2108:8474:84916/1‑65 (MQ=60)
CGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaaaataacgcaaatatacatctcaaaatgcatgcgacac > GWNJ‑0478:712:GW2002102894th:2:1105:14248:59749/1‑37 (MQ=60)
ACACCCCTTTCCGGCGACCTCACCGTATACG‑CCctctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaacaaatcttcatcccaataatgccatcgcaaaggtc > GWNJ‑0478:712:GW2002102894th:2:2112:13294:78302/1‑33 (MQ=60)
cggagatgtgtataagagacaggtatacgcCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATG < GWNJ‑0478:712:GW2002102894th:2:1104:5863:73600/118‑1 (MQ=60)
CTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCT > GWNJ‑0478:712:GW2002102894th:2:1114:4038:26752/1‑150 (MQ=60)
CCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACctgtctcttatacacatctccgagcccac > GWNJ‑0478:712:GW2002102894th:2:2111:17273:85311/1‑121 (MQ=60)
CACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCtgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaacgaatacaaaaagtacta > GWNJ‑0478:712:GW2002102894th:2:2115:12478:90018/1‑50 (MQ=60)
ACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCAT > GWNJ‑0478:712:GW2002102894th:2:2201:18698:95139/1‑150 (MQ=60)
GTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACctgtctcttatacacatctccgagcccacgagacggagctacatctcgt > GWNJ‑0478:712:GW2002102894th:2:1107:7907:39956/1‑101 (MQ=60)
GTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACActgtctcttatacacatctccgagcccacgagacggagct > GWNJ‑0478:712:GW2002102894th:2:1201:2527:31973/1‑109 (MQ=60)
GTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGG > GWNJ‑0478:712:GW2002102894th:2:1209:2249:15756/1‑150 (MQ=60)
ATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGGG < GWNJ‑0478:712:GW2002102894th:2:1216:14595:63186/149‑1 (MQ=60)
gcCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGGGATGCC < GWNJ‑0478:712:GW2002102894th:2:1204:9917:41668/148‑1 (MQ=60)
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CCTTGTCCGCCATTTGCCTTTCCGTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACG‑CCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATGTGGGCTGCCTGGGGCTGGCATGGGGATGCC > AM260479/3972036‑3972330
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
