Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
149 |
26.7 |
2337422 |
87.5% |
2045244 |
105.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
AM260479 |
335,538 |
Δ778 bp |
|
[nagA]–[nagB] |
[nagA], [nagB] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
AM260479 |
335538 |
336315 |
778 |
25 [0] |
[0] 26 |
[nagA]–[nagB] |
[nagA],[nagB] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
AM260479 |
= 335537 | 0 (0.000) | 21 (0.880) |
18/190 |
0.3 |
100% |
coding (912/1104 nt) |
nagA |
N‑Acetylglucosamine‑6‑phosphate deacetylase |
| ? | AM260479 |
336316 = |
0 (0.000) | coding (595/1032 nt) |
nagB |
Glucosamine‑6‑phosphate deaminase |
GATK/CNVnator alignment
N/A
