Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 149 26.7 2337422 87.5% 2045244 105.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 342,407 T→C L180L (TTG→CTG)  amtB → ammonium transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM260479342,4070TC100.0% 141.0 / NA 37L180L (TTG→CTG) amtBammonium transporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (18/19);  total (18/19)

TGGCTACAGCTTTGCCTTCACCGAGGGCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAATTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGTTCGTGGTGCTGTGGTTCACCTTCT  >  AM260479/342283‑342530
                                                                                                                            |                                                                                                                           
tGGCTACAGCTTTGCCTTCACCGAGGGCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGc                                                                                                                        <  1:678556/130‑1 (MQ=255)
   cTACAGCTTTGCCTTCACCGAGGGCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCg                                                                                                                 >  2:1096085/1‑134 (MQ=255)
        gCTTTGCCTTCACCGAGGGCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTc                                                                                                            <  1:169379/134‑1 (MQ=255)
          tttGCCTTCACCGAGGGCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTc                                                                                                            >  2:238276/1‑132 (MQ=255)
          tttGCCTTCACCGAGGGCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTc                                                                                                            >  1:881351/1‑132 (MQ=255)
                ttCACCGAGGGCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTgcgc                                                                                                    >  2:282119/1‑134 (MQ=255)
                  cACCGAGGGCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGcc                                                                                                   <  1:815471/133‑1 (MQ=255)
                        gggCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCt                                                                                            <  2:881351/134‑1 (MQ=255)
                            aaCGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCAt                                                                                        >  2:32472/1‑134 (MQ=255)
                             aCGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCAt                                                                                        >  2:1118623/1‑133 (MQ=255)
                                       cggcggCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGc                                                                              <  1:1096085/133‑1 (MQ=255)
                                                   ccgGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGgcg                                                                 >  2:1074121/1‑134 (MQ=255)
                                                           tCATGAAGGGGCGGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGcc                                                         >  1:366700/1‑134 (MQ=255)
                                                                     gCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGaa                                                      <  1:887543/127‑1 (MQ=255)
                                                                     gCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGaa                                                      >  2:887543/1‑127 (MQ=255)
                                                                          cGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGcc                                                         <  1:7957/119‑1 (MQ=255)
                                                                          cGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGcc                                                         >  2:7957/1‑119 (MQ=255)
                                                                          cGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTtc                                          >  1:396653/1‑134 (MQ=255)
                                                                          cGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTtc                                          <  2:366700/134‑1 (MQ=255)
                                                                                  gCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAAcg                                                    >  1:1089834/1‑116 (MQ=255)
                                                                                  gCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAAcg                                                    <  2:1089834/116‑1 (MQ=255)
                                                                                         ccgccACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGgtg                           >  1:70188/1‑134 (MQ=255)
                                                                                               ccTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGTTCgtg                     <  1:282119/134‑1 (MQ=255)
                                                                                                     gCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGTTCGTGGTGCtg               <  1:238276/134‑1 (MQ=255)
                                                                                                     gCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGTTCGTGGTGCtg               <  2:218723/134‑1 (MQ=255)
                                                                                                      cAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGTTCGTGGTGCtgt              <  1:762090/134‑1 (MQ=255)
                                                                                                          ggCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCt                                                                                            >  2:232174/1‑52 (MQ=255)
                                                                                                          ggCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCt                                                                                            <  1:232174/52‑1 (MQ=255)
                                                                                                          ggCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGTTCGTGGTGCTGTGGtt          <  2:978438/134‑1 (MQ=255)
                                                                                                             gtggtggtgCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCaa                                              >  1:919042/1‑95 (MQ=255)
                                                                                                             gtggtggtgCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCaa                                              <  2:919042/95‑1 (MQ=255)
                                                                                                               ggtggtgCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCg                                   <  2:253899/104‑1 (MQ=255)
                                                                                                               ggtggtgCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCg                                   >  1:253899/1‑104 (MQ=255)
                                                                                                                  ggtgCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCATCTGCGGCCTGatca                                                                       <  2:237829/65‑1 (MQ=255)
                                                                                                                  ggtgCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCATCTGCGGCCTGatca                                                                       >  1:237829/1‑65 (MQ=255)
                                                                                                                  ggtgCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGTTCGTGGTGCTGTGGTTCACCTtct  >  2:591232/1‑134 (MQ=255)
                                                                                                                   gtgCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGTTCGTGGTGCTGTGGTTCACCTtct  <  1:591232/133‑1 (MQ=255)
                                                                                                                            |                                                                                                                           
TGGCTACAGCTTTGCCTTCACCGAGGGCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAATTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGTTCGTGGTGCTGTGGTTCACCTTCT  >  AM260479/342283‑342530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGGTGGCGCTGCTGTGGGCGATCTATGGCTACAGCTTTGCCTTCACCGAGGGCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAATTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGTTCGTGGTGCTGTGGTTCACCTTCTCCTACATCCCGATGG  >  AM260479/342258‑342545
                                                                                                                                                     |                                                                                                                                          
attagcgagtgtctcgtgggctcggagatgtgtataagagacagACCGAGGGCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAAC                                                                                                                                            <  GWNJ‑0478:712:GW2002102894th:2:1103:12388:78531/106‑1 (MQ=60)
                    ATCTATGGCTACAGCTTTGCCTTCACCGAGGGCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCC                                                                                                                          >  GWNJ‑0478:712:GW2002102894th:2:2201:16631:77128/1‑148 (MQ=60)
                        ATGGCTACAGCTTTGCCTTCACCGAGGGCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAG                                                                                                                        <  GWNJ‑0478:712:GW2002102894th:2:2106:16398:31158/146‑1 (MQ=60)
                                AGCTTTGCCTTCACCGAGGGCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCC                                                                                                            <  GWNJ‑0478:712:GW2002102894th:2:1110:15747:14100/150‑1 (MQ=60)
                                          TCACCGAGGGCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACC                                                                                                   <  GWNJ‑0478:712:GW2002102894th:2:2115:20545:47771/149‑1 (MQ=60)
                                                 tcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCC                                                                                            <  GWNJ‑0478:712:GW2002102894th:2:1115:2051:43059/82‑1 (MQ=60)
                                                               TCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCC                                                                              <  GWNJ‑0478:712:GW2002102894th:2:2213:19692:76179/149‑1 (MQ=60)
                                                                     GCACCGACCGGCTCTTCATGAAGGGGCGGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCG                                                                       >  GWNJ‑0478:712:GW2002102894th:2:1207:8149:21576/1‑150 (MQ=60)
                                                                                   GTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTC                                                         <  GWNJ‑0478:712:GW2002102894th:2:1101:16559:52952/150‑1 (MQ=60)
                                                                                    TCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCT                                                        >  GWNJ‑0478:712:GW2002102894th:2:1206:12143:99179/1‑150 (MQ=60)
                                                                                      ATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCG                                                      <  GWNJ‑0478:712:GW2002102894th:2:2203:7089:16292/150‑1 (MQ=60)
                                                                                            GGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCtgt                                                >  GWNJ‑0478:712:GW2002102894th:2:2213:3951:46682/1‑147 (MQ=60)
                                                                                                   CGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGT                                         >  GWNJ‑0478:712:GW2002102894th:2:1104:21076:47763/1‑150 (MQ=60)
                                                                                                                       ACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTctgtctcttatacacatctccgagc                     >  GWNJ‑0478:712:GW2002102894th:2:2204:9654:10503/1‑125 (MQ=60)
                                                                                                                       ACCTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGTTCGTGGTGCTGTGGTTCACC                     <  GWNJ‑0478:712:GW2002102894th:2:1116:9291:89540/150‑1 (MQ=60)
                                                                                                                         CTTCAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGTTCGTGGctgtctcttatacac                    >  GWNJ‑0478:712:GW2002102894th:2:1114:5904:50522/1‑134 (MQ=60)
                                                                                                                            CAGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCATCTGCGGCCTGATCATCGGCGCCTTCGCCGctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccg                >  GWNJ‑0478:712:GW2002102894th:2:1115:4564:70674/1‑95 (MQ=60)
                                                                                                                             AGCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGTTCGTGGTGCTGTGGTTCACCTTCTCC               <  GWNJ‑0478:712:GW2002102894th:2:1115:2241:72707/150‑1 (MQ=60)
                                                                                                                              GCAAGGGCGTGGTGGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGTTCGTGGTGCTGTGGTTCACCTTCTCCT              <  GWNJ‑0478:712:GW2002102894th:2:2110:18147:84920/150‑1 (MQ=60)
                                                                                                                                           GGTGCCGGAACTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGTTCGTGGTGCTGTGGTTCACCTTCTCCTACATCCCGATGG  <  GWNJ‑0478:712:GW2002102894th:2:2103:7555:7575/149‑1 (MQ=60)
                                                                                                                                                     |                                                                                                                                          
TGGTGGCGCTGCTGTGGGCGATCTATGGCTACAGCTTTGCCTTCACCGAGGGCAACGCCTTCTTCGGCGGCACCGACCGGCTCTTCATGAAGGGGCTGACGGTCGAGGCCGTGGCCGCCACCTTCAGCAAGGGCGTGGTGGTGCCGGAATTGGGCTACTTCGCCTTCCAGTGCGCCTTCGCCTGCATCACCTGCGGCCTGATCATCGGCGCCTTCGCCGAACGCGCCAAGTTCTCGGCCGTGCTGGTGTTCGTGGTGCTGTGGTTCACCTTCTCCTACATCCCGATGG  >  AM260479/342258‑342545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: