Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 149 26.7 2337422 87.5% 2045244 105.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAGACCCCGGCGCCGCGCCCGGCACCGCGTCGGCCGGCGCTGCCCACGCCGGAGGCCGAGGTCGCGCCGCCGGCCGGCGCGGCATCGTCTGCCGCGGTGGATGTCGGCCCGGATGAGTCCAGCCTGGCGCTGGATTCGGGGGGAGACGGTGATTGCGGTGCCGCAGGACATGAGCGCGGGCAGCGCTCCGGTTGCGCCACCCCCTCAGGCCGAACCAGCGCCTAACGCCGCCCCTGCCTCCCCGGCTTCCGCAAATCCGCCCGCACCGCCTGCGCCCCCAGCGC  >  AM260480/2430958‑2431241
                                                                                                                                       |                                                                                                                                                    
GAGACCCCGGCGCCGCGCCCGGCACCGCGTCGGCCGGCGCTGCCCACGCCGGAGGCCGAGGTCGCGCCGCCGGCCGGCGCGGCATCGTCTGCCGCGGTGGATGTCGGCCCGGATGAGTCCAGCCTGGCGCTGGA‑TCGGGGGGAGACGGTG                                                                                                                                       <  GWNJ‑0478:712:GW2002102894th:2:2207:4868:97875/150‑1 (MQ=60)
         cctccggcgtgGGCACCGCGTCGGCCGGCGCTGCCCACGCCGGAGGCCGAGGTCGCGCCGCCGGCCGGCGCGGCATCGTCTGCCGCGGTGGATGTCGGCCCGGATGAGTCCAGCCTGGCGCTGGA‑TCGGGGGGAGACGGTGctgtctctt                                                                                                                              >  GWNJ‑0478:712:GW2002102894th:2:2212:18303:58506/12‑141 (MQ=60)
                GCCCGGCACCGCGTCGGCCGGCGCTGCCCACGCCGGAGGCCGAGGTCGCGCCGCCGGCCGGCGCGGCATCGTCTGCCGCGGTGGATGTCGGCCCGGATGAGTCCAGCCTGGCGCTGGA‑TCGGGGGGAGACctgtctcttatacacatctc                                                                                                                       >  GWNJ‑0478:712:GW2002102894th:2:2202:7754:38013/1‑130 (MQ=60)
                  gggggatggcgtatacatttttagtatcaagcagaagacggcatacaagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGGATGAGTCCAGCCTGGCGCTGGA‑TCGGGGGGAGACGGTGATTGCGGTGCCGCAGGA                                                                                                                      <  GWNJ‑0478:712:GW2002102894th:2:2104:2200:40565/57‑1 (MQ=60)
                        cgtttttttttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagcccccgatccagcgccaggctggaTCGGGGGGAGACGGTGATTGCGGTGCCGCAGGACATGAG                                                                                                                <  GWNJ‑0478:712:GW2002102894th:2:1116:17677:72717/39‑1 (MQ=60)
                                                                                                  GGATGTCGGCCCGGATGAGTCCAGCCTGGCGCTGGA‑TCGGGGGGAGACGGTGATTGCGGTGCCGCAGGACATGAGCGCGGGCAGCGCTCCGGTTGCGCCACCCCCTCAGGCCGAACCAGCGCCTAACGCCGCCCCTGCCTCCCCGGCTTC                                     >  GWNJ‑0478:712:GW2002102894th:2:2111:10152:90526/1‑150 (MQ=60)
                                                                                                     TGTCGGCCCGGATGAGTCCAGCCTGGCGCTGGA‑TCGGGGGGAGACGGTGATTGCGGTGCCGCAGGACATGAGCGCGGGCAGCGCTCCGGTTGCGCCACCCCCTCAGGCCGAACCAGCGCCTAACGCCGCCCCTGCCTCCCCGGCTTCCGC                                  >  GWNJ‑0478:712:GW2002102894th:2:2201:2352:19170/1‑150 (MQ=60)
                                                                                                               GATGAGTCCAGCCTGGCGCTGGA‑TCGGGGGGAGACGGTGATTGCGGTGCCGCAGctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaacaaaaatggaaacaaca                         >  GWNJ‑0478:712:GW2002102894th:2:2211:3699:57528/1‑54 (MQ=60)
                                                                                                                    GTCCAGCCTGGCGCTGGA‑TCGGGGGGAGACGGTGATTGCGGTGCCGCAGGACATGAGCGCGGGCAGCGCTCCGGTTGCGCCACCCCCctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgc                   >  GWNJ‑0478:712:GW2002102894th:2:1101:9302:54565/1‑87 (MQ=60)
                                                                                                                                   GGA‑TCGGGGGGAGACGGTGATTGCGGTGCCGCAGGACATGAGCGCGGGCAGCGCTCCGGTTGCGCCACCCCCTCAGGCCGAACCAGCGCCTAACctggctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgt    >  GWNJ‑0478:712:GW2002102894th:2:1211:5679:59794/1‑94 (MQ=60)
                                                                                                                                      ATCGGGGGGAGACGGTGATTGCGGTGCCGCAGctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaacaaaatcatatgtaaactacatcgcaaactatacataaacac  >  GWNJ‑0478:712:GW2002102894th:2:2105:16650:12281/1‑32 (MQ=60)
                                                                                                                                      ATCGGGGGGAGACGGTGATTGCGGTGCCGCAGGACATGAGCGCGGGCAGCGCTCCGGTTGCGCCACCCCCTCAGGCCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaa   >  GWNJ‑0478:712:GW2002102894th:2:1105:14828:25923/1‑77 (MQ=60)
                                                                                                                                       |                                                                                                                                                    
GAGACCCCGGCGCCGCGCCCGGCACCGCGTCGGCCGGCGCTGCCCACGCCGGAGGCCGAGGTCGCGCCGCCGGCCGGCGCGGCATCGTCTGCCGCGGTGGATGTCGGCCCGGATGAGTCCAGCCTGGCGCTGGATTCGGGGGGAGACGGTGATTGCGGTGCCGCAGGACATGAGCGCGGGCAGCGCTCCGGTTGCGCCACCCCCTCAGGCCGAACCAGCGCCTAACGCCGCCCCTGCCTCCCCGGCTTCCGCAAATCCGCCCGCACCGCCTGCGCCCCCAGCGC  >  AM260480/2430958‑2431241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑