Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
146 |
27.9 |
2327082 |
89.7% |
2087392 |
107.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260479 |
787,882 |
+T |
intergenic (‑662/+630) |
h16_A0728 ← / ← h16_A0729 |
response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260479 | 787,879 | 1 | . | T | 100.0%
| 106.4
/ NA
| 28 | intergenic (‑659/+633) | h16_A0728/h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (14/14); total (14/14) |
TCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCG > AM260479/787747‑787988
|
tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTATTCCTTTGATAACAAAaggaaaaggaaa > 1:968732/1‑134 (MQ=255)
tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAaggaaaaggaaa > 2:877942/1‑134 (MQ=255)
tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAaggaaaaggaaa > 1:435413/1‑134 (MQ=255)
tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAaggaaaaggaaa > 1:766390/1‑134 (MQ=255)
cGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑tttt < 2:1146252/134‑2 (MQ=255)
cGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑tttt < 2:1019982/134‑2 (MQ=255)
tttCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATc > 1:1161520/1‑133 (MQ=255)
aCGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑ttt < 2:646181/97‑1 (MQ=255)
aCGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑ttt > 1:646181/1‑97 (MQ=255)
ttCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCt > 2:544647/1‑133 (MQ=255)
ggCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑tttt < 2:934971/82‑2 (MQ=255)
ggCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑tttt > 1:934971/1‑81 (MQ=255)
cTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTATTCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATc < 2:968732/134‑1 (MQ=255)
cTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑tttt < 2:27113/80‑2 (MQ=255)
cTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑tttt > 1:27113/1‑79 (MQ=255)
tCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCt < 2:826311/100‑1 (MQ=255)
tCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCt > 1:826311/1‑100 (MQ=255)
tCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑tttt < 2:856051/78‑2 (MQ=255)
tCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑tttt > 1:856051/1‑77 (MQ=255)
ttCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg < 2:1025536/133‑1 (MQ=255)
tCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCgg > 1:102328/1‑133 (MQ=255)
tCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCgg > 1:746548/1‑133 (MQ=255)
tCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCgg > 1:1125569/1‑133 (MQ=255)
cgcgGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGAtt < 1:1140388/134‑1 (MQ=255)
cgcgGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGAtt < 2:766390/134‑1 (MQ=255)
tgtgCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTgc < 2:435413/134‑1 (MQ=255)
gCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTgcagc > 2:138678/1‑134 (MQ=255)
cGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTg > 1:45874/1‑105 (MQ=255)
cGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTg < 2:45874/105‑1 (MQ=255)
tGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCg < 1:138678/134‑1 (MQ=255)
ccAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGc < 2:643860/134‑1 (MQ=255)
aTCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCg > 1:773945/1‑119 (MQ=255)
aTCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCg < 2:773945/119‑1 (MQ=255)
ttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCa < 1:883595/57‑1 (MQ=255)
ttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCa > 2:883595/1‑57 (MQ=255)
ttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg < 2:140263/130‑1 (MQ=255)
ttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAg > 1:140263/1‑130 (MQ=255)
ttGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGgcg > 1:177942/1‑133 (MQ=255)
aaCAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg < 2:407555/81‑1 (MQ=255)
aaCAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg > 1:407555/1‑81 (MQ=255)
aaCAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTc > 1:903171/1‑88 (MQ=255)
aaCAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTc < 2:903171/88‑1 (MQ=255)
aggaaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg > 2:562788/1‑75 (MQ=255)
aggaaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCg < 1:562788/75‑1 (MQ=255)
ggaaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTg > 2:826459/1‑71 (MQ=255)
ggaaaaggaaatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTg < 1:826459/71‑1 (MQ=255)
|
TCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCG > AM260479/787747‑787988
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTGTGTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAGTGCGTGGCAAGC > AM260479/787764‑788012
|
GTGT‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCA > GWNJ‑0478:712:GW2002102894th:2:2216:7419:91312/1‑149 (MQ=60)
gatgtggttcatttttgtttttctttgttttttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagatTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAAC < GWNJ‑0478:712:GW2002102894th:2:2215:10747:65246/38‑1 (MQ=60)
CCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCtgtctcttatacacatctccg > GWNJ‑0478:712:GW2002102894th:2:2105:5650:98669/1‑128 (MQ=60)
gcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTC < GWNJ‑0478:712:GW2002102894th:2:2201:12392:88179/87‑1 (MQ=60)
CGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCctgtctcttatacacatctccgagcccacgagacactc > GWNJ‑0478:712:GW2002102894th:2:2205:2634:5814/1‑112 (MQ=60)
TCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCctgtctcttatacacatctccgagcacacgagacactcgc > GWNJ‑0478:712:GW2002102894th:2:1103:15366:72994/1‑110 (MQ=60)
CCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCctgtctcttatacacatctccgagcccacgagacactcgct > GWNJ‑0478:712:GW2002102894th:2:2116:12294:30966/1‑108 (MQ=60)
CCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTctgtctcttatacacatctc > GWNJ‑0478:712:GW2002102894th:2:2115:5426:83677/1‑130 (MQ=60)
GTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGG > GWNJ‑0478:712:GW2002102894th:2:1106:7526:25164/1‑149 (MQ=60)
GTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGG > GWNJ‑0478:712:GW2002102894th:2:2215:10302:24110/1‑149 (MQ=60)
GTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGG > GWNJ‑0478:712:GW2002102894th:2:2111:6253:73433/1‑149 (MQ=60)
acgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATAT < GWNJ‑0478:712:GW2002102894th:2:2115:5871:84452/101‑1 (MQ=60)
gattagcgagtgtctcgtgggctcggagatgtgtataagagacagTCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGC < GWNJ‑0478:712:GW2002102894th:2:1214:5930:100520/105‑1 (MQ=60)
GCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGC < GWNJ‑0478:712:GW2002102894th:2:2215:15851:92485/150‑1 (MQ=60)
CATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATctgtctcttatacac > GWNJ‑0478:712:GW2002102894th:2:1105:18722:84351/1‑135 (MQ=60)
GTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTA < GWNJ‑0478:712:GW2002102894th:2:1109:14849:32199/150‑1 (MQ=60)
TGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAC > GWNJ‑0478:712:GW2002102894th:2:2113:17014:19242/1‑150 (MQ=60)
GATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGC > GWNJ‑0478:712:GW2002102894th:2:1110:8434:42621/1‑149 (MQ=60)
GATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGC > GWNJ‑0478:712:GW2002102894th:2:1109:7152:41007/1‑149 (MQ=60)
GGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCctgtctcttatacacatctccgagcccacgagacactcg > GWNJ‑0478:712:GW2002102894th:2:1208:5446:21905/1‑111 (MQ=60)
GGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCtgtctcttatacacatctccgagcccacg > GWNJ‑0478:712:GW2002102894th:2:2202:9083:10353/1‑119 (MQ=60)
TTTGATAACAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaacaatcc > GWNJ‑0478:712:GW2002102894th:2:1111:17402:75290/1‑63 (MQ=60)
CAAAAGGAAAAGGAAATTTTCGGCTGGCCTTGGGCAATTGCTGGCGATCtgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaacacacaaaaaaaaaaaaagac > GWNJ‑0478:712:GW2002102894th:2:2209:1493:29640/1‑49 (MQ=60)
|
GTGTGTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAA‑TTTCGGCTGGCCTTGGGCAATTGCTGGCGATCAATAACGTTCCGCTTCTGATACATCTGGCGGGATTTCTATATTGCAGCGCAGCATTCGGCGAGCGGGTAATTAGGCGCATGGATCACAGTGCGTGGCAAGC > AM260479/787764‑788012
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
