Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
146 |
27.9 |
2327082 |
89.7% |
2087392 |
107.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260480 |
753,133 |
T→C |
K37E (AAG→GAG) |
h16_B0675 ← |
Acyl‑CoA dehydrogenase,short‑chain specific |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260480 | 753,133 | 0 | T | C | 100.0%
| 148.2
/ NA
| 39 | K37E (AAG→GAG) | h16_B0675 | Acyl‑CoA dehydrogenase,short‑chain specific |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (19/20); total (19/20) |
CCAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTTGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTT > AM260480/753007‑753255
|
ccAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTgcg < 1:865566/134‑1 (MQ=255)
caccacCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTgcgcg > 2:820438/1‑123 (MQ=255)
caccacCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTgcgcg > 2:338612/1‑123 (MQ=255)
caccacCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTgcgcg < 1:338612/123‑1 (MQ=255)
caccacCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTgcgcg < 1:820438/123‑1 (MQ=255)
caccacCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCtt < 2:762121/132‑1 (MQ=255)
caccacCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCtt < 2:168349/132‑1 (MQ=255)
ccaccaGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTgcgg < 1:900754/134‑1 (MQ=255)
aGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGc < 1:319023/134‑1 (MQ=255)
ctggctggCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCt < 2:388696/134‑1 (MQ=255)
gctggcGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGa < 1:252541/134‑1 (MQ=255)
gCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTAtt < 1:969440/134‑1 (MQ=255)
gAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTgc < 2:451666/104‑1 (MQ=255)
gAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTgc > 1:451666/1‑104 (MQ=255)
gccggcACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCt > 1:386526/1‑134 (MQ=255)
gcACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTcc > 1:1097514/1‑134 (MQ=255)
ggTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCa < 2:386526/134‑1 (MQ=255)
cccATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCa > 2:205613/1‑121 (MQ=255)
cccATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCa < 1:205613/121‑1 (MQ=255)
cccATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTc > 2:773222/1‑134 (MQ=255)
cccATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTc > 1:679629/1‑134 (MQ=255)
tttCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCtt > 2:101749/1‑58 (MQ=255)
tttCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCtt < 1:101749/58‑1 (MQ=255)
tttCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTg > 2:86793/1‑134 (MQ=255)
tttCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTg > 1:188482/1‑134 (MQ=255)
cAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTa < 1:773222/133‑1 (MQ=255)
cAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTa < 2:679629/133‑1 (MQ=255)
gCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGt < 1:86793/134‑1 (MQ=255)
cTTGTTCCACACGCCGCGATCCATGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTAt < 1:5799/70‑1 (MQ=255)
cTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTAt > 2:5799/1‑70 (MQ=255)
cTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGt < 2:188482/134‑1 (MQ=255)
ccgcGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGa < 2:814140/67‑1 (MQ=255)
ccgcGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGa > 1:814140/1‑67 (MQ=255)
ccgcGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTAt > 2:1142205/1‑134 (MQ=255)
aTCCATGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCtt > 2:798104/1‑134 (MQ=255)
aTCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCtt > 2:96744/1‑134 (MQ=255)
aTCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCtt > 1:1148553/1‑134 (MQ=255)
aTCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCtt > 1:278221/1‑134 (MQ=255)
aTCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCtt > 1:79537/1‑134 (MQ=255)
|
CCAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTTGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTT > AM260480/753007‑753255
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTCCAGCACCAGGCCGCGGCCCAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTTGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTCAGAAACCCAGGATCATCTTGGAGA > AM260480/752987‑753280
|
CTCCAGCACCAGGCCGCGGCCCAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCC > GWNJ‑0478:712:GW2002102894th:2:1206:3370:15990/1‑150 (MQ=60)
CCCAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGG < GWNJ‑0478:712:GW2002102894th:2:2116:7844:77998/150‑1 (MQ=60)
CAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCG < GWNJ‑0478:712:GW2002102894th:2:2115:13096:55608/150‑1 (MQ=60)
CAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCG < GWNJ‑0478:712:GW2002102894th:2:1205:18343:23278/150‑1 (MQ=60)
cagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAA < GWNJ‑0478:712:GW2002102894th:2:1106:1580:22045/88‑1 (MQ=60)
ACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTG < GWNJ‑0478:712:GW2002102894th:2:2203:1803:94810/150‑1 (MQ=60)
CAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTC < GWNJ‑0478:712:GW2002102894th:2:1202:20440:2539/150‑1 (MQ=60)
GGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTAT < GWNJ‑0478:712:GW2002102894th:2:1114:7799:23177/150‑1 (MQ=60)
GGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGctgtctcttatacac > GWNJ‑0478:712:GW2002102894th:2:1211:2392:59826/1‑134 (MQ=60)
acgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCATGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAG < GWNJ‑0478:712:GW2002102894th:2:1101:2911:39493/100‑1 (MQ=60)
GGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGC < GWNJ‑0478:712:GW2002102894th:2:2209:9825:100883/150‑1 (MQ=60)
AAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTG > GWNJ‑0478:712:GW2002102894th:2:1206:11526:3412/1‑150 (MQ=60)
CGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCG > GWNJ‑0478:712:GW2002102894th:2:2213:11690:87945/1‑150 (MQ=60)
GTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCG > GWNJ‑0478:712:GW2002102894th:2:2107:8449:97870/1‑150 (MQ=60)
CAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGC < GWNJ‑0478:712:GW2002102894th:2:1113:13037:86225/149‑1 (MQ=60)
GGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGT > GWNJ‑0478:712:GW2002102894th:2:1110:18898:98321/1‑150 (MQ=60)
TCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTC < GWNJ‑0478:712:GW2002102894th:2:2113:2179:15447/149‑1 (MQ=60)
AGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGC < GWNJ‑0478:712:GW2002102894th:2:1107:5131:35925/150‑1 (MQ=60)
AGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgc > GWNJ‑0478:712:GW2002102894th:2:2115:10198:24838/1‑97 (MQ=60)
GTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTC > GWNJ‑0478:712:GW2002102894th:2:2216:8623:30291/1‑150 (MQ=60)
GTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTC > GWNJ‑0478:712:GW2002102894th:2:1116:16028:51155/1‑150 (MQ=60)
GTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTC > GWNJ‑0478:712:GW2002102894th:2:1104:14461:92497/1‑150 (MQ=60)
ATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCctgtctcttatacacatctccgagccc > GWNJ‑0478:712:GW2002102894th:2:2201:15317:69913/1‑123 (MQ=60)
CGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTCAGAAACCCAGGATCATCTTGGAGA < GWNJ‑0478:712:GW2002102894th:2:2215:13267:59657/148‑1 (MQ=60)
CGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTCAGAAACCCAGGATCATCTTGGAGA < GWNJ‑0478:712:GW2002102894th:2:2215:17709:100467/148‑1 (MQ=60)
|
CTCCAGCACCAGGCCGCGGCCCAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTTGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTCAGAAACCCAGGATCATCTTGGAGA > AM260480/752987‑753280
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
