Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
150 |
26.0 |
2053212 |
90.0% |
1847890 |
107.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260480 |
753,133 |
T→C |
K37E (AAG→GAG) |
h16_B0675 ← |
Acyl‑CoA dehydrogenase,short‑chain specific |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260480 | 753,133 | 0 | T | C | 100.0%
| 150.2
/ NA
| 39 | K37E (AAG→GAG) | h16_B0675 | Acyl‑CoA dehydrogenase,short‑chain specific |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (18/21); total (18/21) |
CCAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTTGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTCAGA > AM260480/753007‑753259
|
ccAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTgcg > 2:976763/1‑134 (MQ=255)
ccAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTgcg < 2:94877/134‑1 (MQ=255)
cgcTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTgcg > 2:601398/1‑126 (MQ=255)
cgcTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTgcg < 1:601398/126‑1 (MQ=255)
cgcTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCCCCTGCGCGCGCGct > 2:267173/1‑134 (MQ=255)
caccacCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCtt < 2:96761/132‑1 (MQ=255)
ccaGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGcggcgg > 2:397228/1‑134 (MQ=255)
gctggcGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTc < 1:201903/132‑1 (MQ=255)
gctggcGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCg > 2:806985/1‑133 (MQ=255)
gctggcGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGa < 1:818487/134‑1 (MQ=255)
gggCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTa > 1:184841/1‑134 (MQ=255)
ccTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTc < 1:267173/134‑1 (MQ=255)
gAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGa < 1:397228/134‑1 (MQ=255)
gccgAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGc < 1:910068/134‑1 (MQ=255)
cgAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGa < 1:624927/134‑1 (MQ=255)
aaGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACg > 2:432777/1‑134 (MQ=255)
gcACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCtt < 2:776022/82‑1 (MQ=255)
gcACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCtt > 1:776022/1‑82 (MQ=255)
aGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCa < 2:184841/133‑1 (MQ=255)
gCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGc < 1:432777/134‑1 (MQ=255)
gCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGc < 1:976763/134‑1 (MQ=255)
cccATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTg < 1:844250/49‑1 (MQ=255)
cccATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTc > 2:978003/1‑134 (MQ=255)
cccATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAAGCTCTCGCCTg > 2:844250/1‑49 (MQ=39)
ttCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTg > 2:273255/1‑133 (MQ=255)
gCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGt > 2:21155/1‑134 (MQ=255)
cTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGt < 1:273255/134‑1 (MQ=255)
gTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTcc < 1:21155/133‑1 (MQ=255)
tCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATg > 2:597817/1‑134 (MQ=255)
cacGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAg < 1:978003/134‑1 (MQ=255)
aTCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACg > 2:696185/1‑47 (MQ=255)
aTCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACg < 1:696185/47‑1 (MQ=255)
aTCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTa < 1:946158/108‑1 (MQ=255)
aTCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTa > 2:946158/1‑108 (MQ=255)
aTCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAg < 2:38244/115‑1 (MQ=255)
aTCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAg > 1:38244/1‑115 (MQ=255)
tCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCtt > 2:421471/1‑133 (MQ=255)
ccAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCtt > 1:731555/1‑132 (MQ=255)
aGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTCAGa < 1:597817/134‑1 (MQ=255)
|
CCAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTTGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTCAGA > AM260480/753007‑753259
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTCCAGCACCAGGCCGCGGCCCAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTTGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTCAGAAACCCAGGATCATCTTGGAGAT > AM260480/752987‑753281
|
CTCCAGCACCAGGCCGCGGCCCAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCC > GWNJ‑0478:712:GW2002102894th:2:1106:18857:49862/1‑150 (MQ=60)
cggagatgtgtataagagacagGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCC < GWNJ‑0478:712:GW2002102894th:2:2209:14176:88000/127‑1 (MQ=60)
ttttcaagcagaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacaGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGC < GWNJ‑0478:712:GW2002102894th:2:2209:6557:21088/80‑1 (MQ=60)
CCCAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGG < GWNJ‑0478:712:GW2002102894th:2:2107:13190:95565/150‑1 (MQ=60)
ACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTAT > GWNJ‑0478:712:GW2002102894th:2:1113:15441:90061/1‑150 (MQ=60)
GGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTAT < GWNJ‑0478:712:GW2002102894th:2:2204:8358:53630/150‑1 (MQ=60)
GGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGT < GWNJ‑0478:712:GW2002102894th:2:1112:6407:91265/148‑1 (MQ=60)
ttttttcaagcagaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGA < GWNJ‑0478:712:GW2002102894th:2:2113:2420:80355/77‑1 (MQ=60)
GCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCG < GWNJ‑0478:712:GW2002102894th:2:1203:11484:4021/150‑1 (MQ=60)
CGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGC < GWNJ‑0478:712:GW2002102894th:2:1211:14824:37745/150‑1 (MQ=60)
CGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACtgtctcttatacacatctccgagcccacgagacgg > GWNJ‑0478:712:GW2002102894th:2:2201:2161:69311/1‑113 (MQ=60)
CGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCG < GWNJ‑0478:712:GW2002102894th:2:2211:6034:28502/150‑1 (MQ=60)
CCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCC < GWNJ‑0478:712:GW2002102894th:2:2108:8850:51426/150‑1 (MQ=60)
AGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTG < GWNJ‑0478:712:GW2002102894th:2:2214:4721:16107/150‑1 (MQ=60)
AGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTG < GWNJ‑0478:712:GW2002102894th:2:1213:18151:40105/150‑1 (MQ=60)
ataagagacagGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTC < GWNJ‑0478:712:GW2002102894th:2:2212:9968:42137/138‑1 (MQ=60)
gtgtataagagacaGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATC < GWNJ‑0478:712:GW2002102894th:2:1114:16976:64736/136‑1 (MQ=60)
GCTTGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCC < GWNJ‑0478:712:GW2002102894th:2:1203:16566:49110/150‑1 (MQ=60)
TGTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCT < GWNJ‑0478:712:GW2002102894th:2:1103:12172:48085/149‑1 (MQ=60)
GTTCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCtgtc > GWNJ‑0478:712:GW2002102894th:2:1105:16031:61761/1‑146 (MQ=60)
TCCACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTC > GWNJ‑0478:712:GW2002102894th:2:2115:12780:89976/1‑148 (MQ=60)
ACACGCCGCGATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTCAGAAA < GWNJ‑0478:712:GW2002102894th:2:2214:6542:22939/150‑1 (MQ=60)
ATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGctgtctcttatacacatctccgagcccacgagacg > GWNJ‑0478:712:GW2002102894th:2:1103:21068:61676/1‑115 (MQ=60)
ATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTCAGAAACCCAGGATC > GWNJ‑0478:712:GW2002102894th:2:1210:18856:67047/1‑149 (MQ=60)
ATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTCAGAAACCCAGGATC > GWNJ‑0478:712:GW2002102894th:2:1110:6393:87582/1‑149 (MQ=60)
ATCCAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTCAGAAACCCAGGATC > GWNJ‑0478:712:GW2002102894th:2:1107:8511:60505/1‑149 (MQ=60)
CAGGCTCTCGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTCAGAAACCCAGGATCATCT < GWNJ‑0478:712:GW2002102894th:2:2107:10473:74125/150‑1 (MQ=60)
CGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaacaaccgcaacggagaccagcatccaccaga > GWNJ‑0478:712:GW2002102894th:2:2115:20232:75172/1‑46 (MQ=60)
|
CTCCAGCACCAGGCCGCGGCCCAGTTCGCGCTGCACCACCAGCTGGCTGGCGGGGCCTTCGCCGAAGCCGCCGAAGTCGGCCGGCACGGTCAGGCCCAGCACGCCCATTTCAGCGAGCTTGTTCCACACGCCGCGATCCAGGCTCTTGCCTGCGCGCGCGCTCTTGCGGCGGGCCTCGAACGTGTATTCGGTATCGATGAAGCGACGCAGGCTGTCCGCCAGCATCTGTTGCTCTTCGCTGTAGGTGAAGTCCATGTCAGCTATCCCTTCAGAAACCCAGGATCATCTTGGAGAT > AM260480/752987‑753281
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
