Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
6081 |
0.0 |
0 |
0.0% |
0 |
0.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTGTCCAGTCGTTGAGTCTCATACCGGAAGAACACTAGATTTACGAATTATTCCAAGAATTGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGACGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTATCCAGAAGATTCTATTCAGAAAGTTGCCCGTTATGAAAGAGTTCAATTTGCTTCAT > BK006934/356784‑357338
|
ATTGTCCAGTCGTTGAGTCTCATACCGGAAGAACACTAGATTTACGAATTATTCCAAGAATTGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAAAGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAG < SRR13385771.549874/300‑1 (MQ=60)
CATACCGGAAGAACACTAGATTTACGAATTATTCCAAGAATTGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTGTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTC < SRR13385771.172301/301‑1 (MQ=60)
CGGAAGAACACTAGATTTACGAATTATTCCAAGAATTGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAACTTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGACACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGACACGCGACAAAGGTCCTCAATTT > SRR13385771.809484/1‑301 (MQ=60)
AGAACACTAGATTTACGAATTATTCCAAGAATTGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTCAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTC > SRR13385771.72224/1‑301 (MQ=60)
ACACTAGATTTACGAATTATTCCAAGAATTGACAGAGGGTGCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAATATTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTT < SRR13385771.1731357/301‑1 (MQ=60)
TACGAATTATTCCAAGAATTGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCC > SRR13385771.381847/1‑301 (MQ=60)
CAAGAATTGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCTCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTCTCCTTCAGTATGTCCGTTGGTGCCTTC > SRR13385771.52664/1‑301 (MQ=60)
TTGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTT > SRR13385771.1761029/1‑301 (MQ=60)
TGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATAATTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGAAAAAGGTCATCAATTTTGTCCTTCAGTATGTACGTTGGTGCCTTCCCCTTTG > SRR13385771.1778163/1‑301 (MQ=60)
AGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGACATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGCCTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAACGGTCCTCACTTTTGTCATTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCA > SRR13385771.650286/1‑300 (MQ=60)
gaagttttggtagtttataaagtAAATTATTTTACCTTGGTATCAGCGTTTGAAACGGCAAATTTGGATTGGGATACTTTTTTAAAGAGCAGTTGTGAGCTTGTCGGTGAAGACTCTGCAGTAGAAAGCAGATTAAGAGTGAGATATGTCGCTATCAAAATAAAAGCTAAGAATGAGGACGACGACACGGAAATCAATCGCGTCCAGCATACAGCGAAGCGCGACAAAGTTCCTCAATTTTGTCCTTGAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAG < SRR13385771.1124551/278‑1 (MQ=60)
AAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAACGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACACAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCACATGTTCGAAATAC > SRR13385771.566328/1‑301 (MQ=60)
TATTTTACCTTAGTATCAACGTTTGCAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGCTCTTCTCGTTGCAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATACTTCGCTATCAAAATAAACGCTAAGACTGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAA < SRR13385771.728993/300‑1 (MQ=60)
TTTTACCTTAGTATCAACGTTTGAAACGGAAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTACGAATTATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACA > SRR13385771.1461079/1‑197 (MQ=60)
TTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGA < SRR13385771.187068/300‑1 (MQ=60)
GTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACT < SRR13385771.384013/301‑1 (MQ=60)
GGCAAATTGTGATTTGGATACTTTTTTAAATAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGTAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTG < SRR13385771.585251/301‑1 (MQ=60)
GATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTACGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCAATTTTTATTTGCACAGAGACC > SRR13385771.1026111/1‑301 (MQ=60)
TACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAG > SRR13385771.19363/1‑176 (MQ=60)
TAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAAT < SRR13385771.1055915/236‑1 (MQ=60)
TTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTG > SRR13385771.1110491/1‑301 (MQ=60)
TTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGG > SRR13385771.1711086/1‑301 (MQ=60)
TCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTATC > SRR13385771.1105899/1‑301 (MQ=60)
ATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTATCCAGAAGATTCTATTCAGAAAGTTGCCCGT > SRR13385771.64639/1‑301 (MQ=60)
ATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTATCCAGAAGATTCTATTCAGAAAGTTGCCCGT < SRR13385771.1152660/301‑1 (MQ=60)
TCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTATCCAGAAGATTCTATTCAGAAAGTTGCCCGTTATG < SRR13385771.707566/300‑1 (MQ=60)
TCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTATCCAGAAGATTCTATTCAGAAAGTTGCCCGTTATG < SRR13385771.955926/300‑1 (MQ=60)
CGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTATCCAGAAGATTCTATTCAGAAAGTTGCCCGTTATGA > SRR13385771.1799785/1‑300 (MQ=60)
CAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATATCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTATCCAGAAGATTCTATTCAGAAAGTTGCCCGTTATGAAAGAGTT > SRR13385771.111346/1‑301 (MQ=60)
AAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTATCCAGAAGATTCTATTCAGAAAGTTGCCCGTTATGAAAGAGTTCA < SRR13385771.1853238/301‑1 (MQ=60)
TAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATT < SRR13385771.760881/244‑1 (MQ=60)
AAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACCAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCCAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGCCTCTTTATTGTTTTCCTATCCAGAAGATTCTATTCAGACAGTTGCCAGTTATGAAAGAGTTCAATTTGCTTCAT > SRR13385771.1658309/1‑301 (MQ=60)
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ATTGTCCAGTCGTTGAGTCTCATACCGGAAGAACACTAGATTTACGAATTATTCCAAGAATTGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGACGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTATCCAGAAGATTCTATTCAGAAAGTTGCCCGTTATGAAAGAGTTCAATTTGCTTCAT > BK006934/356784‑357338
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |