Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAACACTTTAGCTTGCATGTAATTTTAGGTGCAGTGGTAGATCCAGATACCTTTCATGGGGAGAATCCCGGAATTCCTTATGATGAACTGGCTTTAAAAAATGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCTTAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCGCTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGGTGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTACTCAA  >  BK006934/357371‑357947
                                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                             
AAACACTTTAGCTTGCATGTAATTTTAGGTGTAGTGGTAGATCCAGATACCTTTCATGGGGAGAATCCCGGAATTCCTTATGATGAACTGGCTTTAAAAAATGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCA                                                                                                                                                                                                                                                                                       <  SRR13385772.887783/300‑1 (MQ=60)
                                AGTGGTAGATCCAGATACCTTTCATGGGGAGAATCCCGGAATTCCTTATGATGAACTGGCTTTAAAAAATGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGACGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAAAAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGAGGCACT                                                                                                                                                                                                                                                       >  SRR13385772.923729/1‑300 (MQ=60)
                                AGTGGTAGATCCAGATACCTTTCATGGGGAGAATCCCGGAATTCCTTATGATGAACTGGCTTTAAAAAATGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAActgcaacc                                                                                                                                                                                                                                                       >  SRR13385772.757933/1‑292 (MQ=60)
                                             GATACCTTTCATGGGGAGAATCCCGGAATTCCTTATGATGAACTGGCTTTAAAAAATGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACT                                                                                                                                                                                                                                         >  SRR13385772.875226/1‑301 (MQ=60)
                                                                       AATTCCTTATGATGAACTGGCTTTAAAAAATGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCA                                                                                                                                                                                                                                                         <  SRR13385772.1202122/259‑1 (MQ=60)
                                                                            CTTATGATGAACTGGCTTTAAAAAATGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGCACGTTGCATAAATGCAAGACCTTCGAAAAGGCAATCTAAAGTGGCACTAGCTCCACCGAACCCTGGTGCCTCCATCTCGCCTATCAAATCTCG                                                                                                                                                                                                          >  SRR13385772.478308/1‑301 (MQ=60)
                                                                                    GAACTGGCTTTAAAAAATGGATCAAAAGGGATGTTCGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCA                                                                                                                                                                                                  <  SRR13385772.15142/301‑1 (MQ=60)
                                                                                            TTTAAAAAATGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAAT                                                                                                                                                                                           <  SRR13385772.1105011/300‑1 (MQ=60)
                                                                                                     TGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCA                                                                                                                                                                                                                                                                                       <  SRR13385772.152464/199‑1 (MQ=60)
                                                                                                                        GTGTATTTGCAAGAAATGAAACCGCCTCCTCTTATTAGTAGAGGAAGATCACCTTCTACCTATGCGTCATCTCAGCGAATAACTGTGAGACCACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGT                                                                                                                                                              <  SRR13385772.1042748/301‑1 (MQ=60)
                                                                                                                                 CAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGC                                                                                                                                                     >  SRR13385772.882636/1‑301 (MQ=60)
                                                                                                                                  AAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAAGGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGT                                                                                                                                                                                                                                                   <  SRR13385772.1097344/206‑1 (MQ=60)
                                                                                                                                   AGAAATGAATACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCA                                                                                                                                                   <  SRR13385772.1069988/301‑1 (MQ=60)
                                                                                                                                       ATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCGTCAGGCCAAAT                                                                                                                                                >  SRR13385772.761468/1‑300 (MQ=60)
                                                                                                                                                        TATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAA                                                                                                                                                                                                                                                                          <  SRR13385772.794847/161‑1 (MQ=60)
                                                                                                                                                         ATTATTAGAGGAAGAGCACCTTCTAACGATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTG                                                                                                                             <  SRR13385772.722546/301‑1 (MQ=60)
                                                                                                                                                              GAGAGTAAGATCACCGTCGAACTATGCGTCATCGCAGCGAATGACGGTGAGAACACCGTCGAGTGTCAATTCCGCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGGTAAATGAAAGGTGCATAAATGCAATACCTTCGAAGAGGCGATCCAAAGTGGCACTAGGGGCACCTAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGTCCAAATAAAAGGGTGGAGACTCTTGAACAT                                                                                                                        <  SRR13385772.145609/301‑1 (MQ=60)
                                                                                                                                                                           gtgacgggagttcatacgggtgctcttccgatcGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACATCACAAAAAGAAAAATGCCAGCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAAGCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAAGAAAATGGTGGAGACTCTTGAACATATCCAGAACAAAC                                                                                                           <  SRR13385772.985070/268‑1 (MQ=60)
                                                                                                                                                                                    TATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACATCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAATGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTT                                                                                                  >  SRR13385772.310337/1‑301 (MQ=60)
                                                                                                                                                                                                         ACTGTGAGAACACCTTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGTGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATT                                                                             <  SRR13385772.931200/301‑1 (MQ=60)
                                                                                                                                                                                                                                        CACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAG                                              <  SRR13385772.315633/301‑1 (MQ=60)
                                                                                                                                                                                                                                                          GAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTT                            <  SRR13385772.81398/301‑1 (MQ=60)
                                                                                                                                                                                                                                                            AAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCT‑GGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTT                            >  SRR13385772.1029049/1‑298 (MQ=60)
                                                                                                                                                                                                                                                             AAATGCCATAAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTAGAAAAGGAGATCCAAAGTGGCACTAGGTGCACCGAAATCTGGGGCATCCATCTCGACTATCAAATCTAGTCAATACACAACAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTATTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATAAATGTACAGATTCCTCTCTGAAATATACGAGTTCATCTTCACGAGGTATGGAAGAGTGTTT                            >  SRR13385772.733071/1‑298 (MQ=60)
                                                                                                                                                                                                                                                                      CAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGATGGGTGTTTAGATAAGGAGGG                >  SRR13385772.459484/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                GCCGTTAAATGAAAGTTGCATAAATGCAAGAACTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTAT      <  SRR13385772.1054735/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                     TAAATGACAGTTGCATAAATGCAAGACCTTCGCAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAA  <  SRR13385772.252317/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                     TAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCA   >  SRR13385772.634973/1‑299 (MQ=60)
                                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                             
AAACACTTTAGCTTGCATGTAATTTTAGGTGCAGTGGTAGATCCAGATACCTTTCATGGGGAGAATCCCGGAATTCCTTATGATGAACTGGCTTTAAAAAATGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCTTAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCGCTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGGTGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTACTCAA  >  BK006934/357371‑357947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑