Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGAATTAGTGAGAGATTATTGTCCAGTCGTTGAGTCTCATACCGGAAGAACACTAGATTTACGAATTATTCCAAGAATTGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGACGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTATCCAGAAGATTCTATTCAGAAAGTTGCCCGTTATGAAAGAGTTCAATTTGCTT  >  BK006934/356767‑357335
                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                                 
TGAATTAGTGAGAGATTATTGTCCAGTCGTTGAGTCTCATACCGGAAGAACACTAGATTTACGAATTATTCCAAGAATTGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATGAAGAGTGCAATATTTCGCTATCACAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAA                                                                                                                                                                                                                                                                               >  SRR13385772.646119/1‑300 (MQ=60)
 GAATTAGTGAGAGATTATTGTCCAGTCGTTGAGTCTCATACCGGAAGAACACTAGATTTACGAATTATTCCAAGAATTGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAAT                                                                                                                                                                                                                                                                              <  SRR13385772.879990/300‑1 (MQ=60)
                        AGACGTTGAGTCTCATACCGGACGAACACTAGAATTACGAATTATTCCAAGAATTGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGAAGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGC                                                                                                                                                                                                                                                      <  SRR13385772.1236571/301‑1 (MQ=60)
                           CGTTGAGTCTCATACCGGAAGAACACTAGATTTACGAATTATTCCAAGAATTGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATAATTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCACAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGAGA                                                                                                                                                                                                                                                    >  SRR13385772.1048960/1‑300 (MQ=60)
                                           GGAAGAACACTAGATTTACGAATTATTCCAAGAATTGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGGTTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTT                                                                                                                                                                                                                                   >  SRR13385772.940518/1‑301 (MQ=60)
                                                                                    AGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCACAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCACA                                                                                                                                                                                           >  SRR13385772.1019920/1‑300 (MQ=60)
                                                                                      GGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTCGAAAGCAGATTAAGAGTGCAATATTTCGCTATCCAAATAAAAGCTCAGAATGATGACGAAGACACGGAAATCAATCTCGTCCAGCATACAGCGAAA                                                                                                                                                                                                                                                         >  SRR13385772.375468/1‑236 (MQ=60)
                                                                                         TCGACCATATTGATTAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGTTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATC                                                                                                                                                                                      <  SRR13385772.111029/300‑1 (MQ=60)
                                                                                           GACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAA                                                                                                                                                                                    >  SRR13385772.23063/1‑300 (MQ=60)
                                                                                                    GATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTTGATACTGTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTTCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGA                                                                                                                                                                           <  SRR13385772.1059695/300‑1 (MQ=60)
                                                                                                             TGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCA                                                                                                                                                                  >  SRR13385772.879119/1‑300 (MQ=60)
                                                                                                                                  TAGTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTTGATACTTTTTTAAAGGGCAGTTTTGATCTGCTCGTTGAAGACTCTTCAGTAGAAAGCAGATGAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATATCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAA                                                                                                                                             <  SRR13385772.4143/300‑1 (MQ=60)
                                                                                                                                             AGTATCAACGTTTGAAACGGCATATTGTTATTTGGATACTTTTTTAAAGAGCAGTTTTTATCTTCTCGTTGAAGACGCTTCAGTAGAAAGCAGATTAAGATTGCAATATTTCGCTATCAAAATAAAAGCTAATAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGTAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATA                                                                                                                                  <  SRR13385772.913163/300‑1 (MQ=60)
                                                                                                                                             AGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGAT                                                                                                                                                                                                                                                                                                   >  SRR13385772.837589/1‑139 (MQ=60)
                                                                                                                                                                       GTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTAAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGA                                                                                                       <  SRR13385772.321821/301‑1 (MQ=60)
                                                                                                                                                                          ATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCACCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATCTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTCCACAGAGACCC                                                                                                    >  SRR13385772.618146/1‑301 (MQ=60)
                                                                                                                                                                                                    TTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTG                                                                           <  SRR13385772.1075594/300‑1 (MQ=60)
                                                                                                                                                                                                                 TTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTACTTATGAAGAATATGGAGTGGACTCTTTATTGTT                                                             >  SRR13385772.102428/1‑301 (MQ=60)
                                                                                                                                                                                                                   GAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTTCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTT                                                           >  SRR13385772.571367/1‑301 (MQ=60)
                                                                                                                                                                                                                          CTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGATAACAAAATAGAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAAAGCGACAAAGGTCCTCAATTTTGTCCTTAAGTATGTCCGTTGGTGCCTTCTCCTTTGCCAAAGCATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACAACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTAT                                                      <  SRR13385772.185829/299‑1 (MQ=60)
                                                                                                                                                                                                                                             AAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTATCCAGAAGATTCTATTCAGAAA                                 <  SRR13385772.363994/301‑1 (MQ=60)
                                                                                                                                                                                                                                                    CAATATTTCGCTATCAAAATAAAAGCTAAGAATGATGACGACGACACGGAAATAAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCATCACTTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCCAAACACCAAATCATAAGAGAAGCTTCCAATGTTCGAAATATCACTCAAATGAAAAAATACGATTCAACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTATCCAGAAGATTCTATTCAGACAGTTGCCC                          >  SRR13385772.367744/1‑301 (MQ=60)
                                                                                                                                                                                                                                                       TATTTCGCTATCAAAATAAAAGCTAAGCATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCAAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGACATATCACTAAAATGAAAAAATAAGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTATCCAGAAGATTCTATTCAGAAAGTTGCCCGTT                       >  SRR13385772.1208286/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                           AGCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAA                                                                                                                                                                                   >  SRR13385772.1055244/1‑125 (MQ=60)
                                                                                                                                                                                                                                                                            GCTAAGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCAAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTACGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTATCCAGAAGATTCTATTCCGCAAGTTGCCCGTTATGAAAGAGTTCAATTTGCTT  >  SRR13385772.29063/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                AGAATGATGACGACGACACGGAAATCAATCTCGTCCAGCATACATCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTT                                                                                                                <  SRR13385772.929963/187‑1 (MQ=60)
                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                                 
TGAATTAGTGAGAGATTATTGTCCAGTCGTTGAGTCTCATACCGGAAGAACACTAGATTTACGAATTATTCCAAGAATTGACAGAGGGTTCGACCATATTGATGAAGAGTGGGTAGGTTATAAAAGAAATTATTTTACCTTAGTATCAACGTTTGAAACGGCAAATTGTGATTTGGATACTTTTTTAAAGAGCAGTTTTGATCTTCTCGTTGAAGACTCTTCAGTAGAAAGCAGATTAAGAGTGCAATATTTCGCTATCAAAATAAAAGCTAAGAATGACGACGACGACACGGAAATCAATCTCGTCCAGCATACAGCGAAACGCGACAAAGGTCCTCAATTTTGTCCTTCAGTATGTCCGTTGGTGCCTTCCCCTTTGCCAAAACATCAAATCATAAGAGAAGCTTCAAATGTTCGAAATATCACTAAAATGAAAAAATACGATTCCACTTTTTATTTGCACAGAGACCACGTTAATTATGAAGAATATGGAGTGGACTCTTTATTGTTTTCCTATCCAGAAGATTCTATTCAGAAAGTTGCCCGTTATGAAAGAGTTCAATTTGCTT  >  BK006934/356767‑357335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑