Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACAACTGATAAAGTGCCCAACAGACGGTACTGACACTGATCCACTCTCTGGCATGTATACCACCTGTGATAACAATAGTCTTCTTTTCCGGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGTGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATT  >  BK006934/369197‑369782
                                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                                           
ACAACTGATAAAGTGCCCAACAGACGGTACTGACACTGATCCACTCTCTGGCATGTATACCACCTGTGATAACAATAGTCTTCTTTTCCGGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACT                                                                                                                                                                                                                                                                                               <  SRR13385771.20700/301‑1 (MQ=60)
    CTGATAACGTGCCCAACAGACGGTACTGACACTGATCCACTCTCTGGCATGTATACCACCTGTGATAACAATAGTCTTCTTTTCCGGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGCAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCACTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGT                                                                                                                                                                                                                                                                                            >  SRR13385771.712798/1‑300 (MQ=60)
                                ACACTGATCCACTCTCTGGCATGTATACCACCTGTGATAACAATAGTCTTCTTTTCCGGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCACTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCACTGTATTTTGTATCAATTCATTC                                                                                                                                                                                                                                                                >  SRR13385771.1681558/1‑300 (MQ=60)
                                                                          ATAGTCTTCTTTTCCGGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTT                                                                                                                                                                                                                     >  SRR13385771.490870/1‑301 (MQ=60)
                                                                          ATAGTCTTCTTTTCCGGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTA                                                                                                                                                                                                                     <  SRR13385771.503668/301‑1 (MQ=60)
                                                                          ATAGTCTTCTTTTCCGGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCA                                                                                                                                                                                                                                                                                                         >  SRR13385771.543025/1‑217 (MQ=60)
                                                                                         GGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACT                                                                                                                                                                                                      <  SRR13385771.572121/301‑1 (MQ=60)
                                                                                                                       TGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATACAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGCAATTATTGCTTCTCGTCC                                                                                                                                                                        >  SRR13385771.1083932/1‑301 (MQ=60)
                                                                                                                                                        CTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCC                                                                                                                                       >  SRR13385771.1309961/1‑301 (MQ=60)
                                                                                                                                                             CAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCT                                                                                                                                  <  SRR13385771.1808447/301‑1 (MQ=60)
                                                                                                                                                              AAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTC                                                                                                                                 <  SRR13385771.1125344/301‑1 (MQ=60)
                                                                                                                                                                     CCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCAGTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCA                                                                                                                           <  SRR13385771.870298/300‑1 (MQ=60)
                                                                                                                                                                          GCAACCAAACTGGGAAAGCTTATTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCTCTGTATTCGTTAAAGAAGAAATCGTCATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTA                                                                                                                      <  SRR13385771.936313/300‑1 (MQ=60)
                                                                                                                                                                            AACCAAACTTGGAAAGCTTCGTTCTAGAAGATCCAACCACAGATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATAATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAA                                                                                                                   <  SRR13385771.1700172/301‑1 (MQ=60)
                                                                                                                                                                              CCAAACTGGGAAAGCTTCTTTCTAGAAGATACAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCA                                                                                                                                                                                                                                     <  SRR13385771.1654833/185‑1 (MQ=60)
                                                                                                                                                                                        AAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTAAACGAAGAAATCGTAATCATTTTCAAAACCAGCCTGCTCAAGAGCCATCATCTGAATTGTAGGCAATGTATTTTGTACCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATCCATCATAATCATCTGTCAGAGGTGCGATCACATCCCTTACCAGGACAGAATAGTTGTCTGA                                                                                                        >  SRR13385771.1882140/1‑300 (MQ=60)
                                                                                                                                                                                            CTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTA                                                                                                    >  SRR13385771.916640/1‑300 (MQ=60)
                                                                                                                                                                                                  TCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAATAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGGCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAAGAGTTGTCTGAAGTAAACCTG                                                                                              <  SRR13385771.434628/300‑1 (MQ=60)
                                                                                                                                                                                                          ATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTAAGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATACTCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCG                                                                                     >  SRR13385771.1269063/1‑301 (MQ=60)
                                                                                                                                                                                                              AACCCCATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGCAATCGTACTCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATT                                                                                 >  SRR13385771.714264/1‑301 (MQ=60)
                                                                                                                                                                                                                             GTATCCAGTTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTGTGTATCAATTCATTCATGTTATCGATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCAGCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTT                                                                  <  SRR13385771.1039838/301‑1 (MQ=60)
                                                                                                                                                                                                                                            TATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCAC                                                     >  SRR13385771.1835239/1‑299 (MQ=60)
                                                                                                                                                                                                                                                             ATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGT                                  >  SRR13385771.939683/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                  AATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAACAC                             >  SRR13385771.902214/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                           CAAAAACATCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTGTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACGGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAA                     <  SRR13385771.1320371/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                            AAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCACACATCATAATCATCTGTCAGCGGTGCGATCACACCTCTTACCAGGTTAGAATAGTTGTCTGACGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCCGTCACGGCTAGTAAAACGAAAAGAAA                    >  SRR13385771.1516909/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                             GAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATT  >  SRR13385771.513642/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                                           
ACAACTGATAAAGTGCCCAACAGACGGTACTGACACTGATCCACTCTCTGGCATGTATACCACCTGTGATAACAATAGTCTTCTTTTCCGGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGTGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATT  >  BK006934/369197‑369782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑