Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
6054 |
0.0 |
0 |
0.0% |
0 |
0.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAATATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAGGATCTTTCACCTACAAGCAGCAGGGTGGATTTGAGCAATCCTCATGGGTTTACCAAAGAGGGAGTGGATTTATCGAAGCTGTCACCACAAGAACTAAAATTGTATAAAATGTATGGGAAGCTTCCATCCAAAAAAGATCTGTTAAGACATAAGATGCAGGATCGTCAATATTTTGACAGCGGAGATTATGCATTGAAAAAGGCCGG > BK006934/369684‑370268
|
AAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGAT < SRR13385772.1260843/300‑1 (MQ=60)
TAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTC > SRR13385772.155785/1‑301 (MQ=60)
AAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTC > SRR13385772.1130866/1‑300 (MQ=60)
AAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTGCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCA < SRR13385772.10618/301‑1 (MQ=60)
CGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATA < SRR13385772.848917/301‑1 (MQ=60)
TATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGCAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATAC > SRR13385772.41681/1‑300 (MQ=60)
TTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAA < SRR13385772.136309/300‑1 (MQ=60)
CTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTACAACGAAAAGAAAACAACCCCACAACGAATTCATGCGCAACATGATATAACTTAACACTCTGGTTTGCTTATAAAGTGTTAACTTGATATTTTAAACAGTCGACAATATTTTATCCTTCCTTCCATCTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTAAGCGAAGGAGACAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGAAGAAGACTGGGGCTAAGAAATACAACcaa > SRR13385772.1288115/1‑297 (MQ=60)
GCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGT < SRR13385772.755940/301‑1 (MQ=60)
GCACCTGGCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAATTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGT < SRR13385772.550864/301‑1 (MQ=60)
CCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGT < SRR13385772.353049/301‑1 (MQ=60)
AAAAACAACCCCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGA < SRR13385772.1071812/301‑1 (MQ=60)
AAAACAACCCCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAG < SRR13385772.239039/301‑1 (MQ=60)
AAAACAACCCCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTACATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGCGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAACTACAACACATATAAACAAAAATACGTACCAAAGCAGTGTTA > SRR13385772.525905/1‑276 (MQ=60)
CCCTCAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTAGATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTGCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAGGATCTTTC < SRR13385772.1215640/301‑1 (MQ=60)
CCCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAGGATCTTTC < SRR13385772.789786/301‑1 (MQ=60)
CCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAGGATCTTTCA < SRR13385772.1198471/301‑1 (MQ=60)
ACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTACAATCCGCAGTCAGCGCAGGAGCAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGACGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTAACAAAGAAGTGCTATAAAAGTGATATAACTATGTCAGAGGATCTTTCACC > SRR13385772.672855/1‑301 (MQ=60)
AACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAGGATCTTTCACCTACAAGCAGCAGGGTGGATTTGAGCAATCCTC > SRR13385772.656363/1‑301 (MQ=60)
ACACTCTGGTTTGTTTACATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAGGATCTTTCACCTACAAGCAGCAGGGTGGATTTGAGCAATCCTC > SRR13385772.204437/1‑300 (MQ=60)
ATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAGGATCTTTCACCTACAAGCAGCAGGGTGGATTTGAGCAATCCTCATGGGTTTACCAAAGAGGG > SRR13385772.671723/1‑301 (MQ=60)
TTTAAACCGTCGAAAATCTTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTCAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAGGATCTTTCACCTACAAGCAGCAGGGTGGATCTGAGCAATCCTCATGGGTTTACCAAAGAGGGAGTGGATTTATCGAAGCT > SRR13385772.758152/1‑301 (MQ=60)
ATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAA < SRR13385772.590003/153‑1 (MQ=60)
AACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAGGATCTTTCACCTACAAGCAGCAGGGTGGATTTGAGCAATCCTCATGGGTTTACCAAAGAGGGAGTGGCTTTATCGAAGCTGTCACCACAAGAACTAAAATTGTATAAAATGTATGGGAAGCTTC > SRR13385772.764216/1‑301 (MQ=60)
GTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAGGATCTTTCACCTACAAGCAGCAGGGTGGATTTGAGCAATCCTCATGGGTTTACCAAAGAGGGAGTGGATTTATCGAAGCTGTCACCACAAGAACTAAAATTGTATAAAATGTATGGGAAGCTTCCATCCAAAAAA > SRR13385772.545527/1‑300 (MQ=60)
TCGTAAAATCCGCAGTCAGCGCATGAGAAAATAGAACGAGACAAATGATCTGTTAAATTACAGGTTATCGCGGGAGAAGATTGGTGTTCAGAAATACAACACATATAAACAAAAAGACGTACCAAAGAAGTGGTATAAAAGTGATATAACTATGTCAGAGGATCTTTCACCTACAAGCATCAGGGTGGATTTGAGCAATCCTCATGGTTTTACCAAAGAGGGAGTGGATTTATCGAAGCTGTCACCACAAGAACTAAAATTGTATAAAATGTATGGGAAGCTTCCATCCAAAAAAGATCT < SRR13385772.187132/300‑1 (MQ=60)
CGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAGGATCTTTCACCTACAAGCAGCAGGGTGGATTTGAGCAATCCTCATGGGTTTACCAAAGAGGGAGTGGATTTATCGAAGCTGTCACCACCAGAACTAAAATTGTATACAATGTATGGGAAGCTTCCATCCAAAAAAGATCTGT > SRR13385772.892279/1‑301 (MQ=60)
AAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAACAATACGTACCAACGAAGTGTTATAAACGTGATATAACTATGTCAGAGGATCTTTCACCTACAAGCAGCAGGGTGGATTTGAGCAATCCTCATGGGTTTACCAAAGAGGGAGTGGATTTATAGAAGCTGTCACCACAAGAACTAAAATTGAATAAAATGTATGGGAAGCTTCCATCCAAAAAAGATCTGTTAA > SRR13385772.1276938/1‑300 (MQ=60)
ACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGATTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAGGATCTTTCACCTACAAGCAGCAGGGTGGATTTGAGCAATC < SRR13385772.360336/165‑1 (MQ=60)
AAATGATCTTTTAAATTACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAGGATCTTTCACCTACAAGCAGCAGGGTGGATTTGAGCAATCCTCATGGGTTTACCAAAGAGGGAGTGGATTTATCGAAGCTGTCACCACAAGAACTAAAATTGTATAAAATGTATGGGAAGCTTCCATCCAAAAAAGATCTGTTAAGACATAAGATGCAGGATCGTCAATATTTTGACAGCGGG > SRR13385772.385894/1‑301 (MQ=60)
ACAGGTTATCGCGGGAGAAGATTGGGGTTCAGAAATACGACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAGGATCTTTCACCTACAAGCAGCAGGGTGGATTTGAGCAATCCTCATGGGTTTACCAAAGAGGGAGTGGATTTATCGAAGCTGTCACCACAAGAACTAAAATTGTATAAAATGTATGGGAAGCTTCCATCCAAAAAAGATCTGTTAAGACATAAGATGCAGGATCGTCAATATTTTGACAGCGGAGATTATGCATTGAAAA < SRR13385772.872705/300‑1 (MQ=60)
ATCGCGGGAGAAGATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAGGATCTTTCACCTACAAGCAGCAGAGTGGATTTGAGCAATCCTCATGGGTTTACCAAAGAGGGAGTGGATTTATCGAAGCTGTCACCACAAGAACTAAAATTGTATAAAATGTATGGGAAGCTTCCATCCAAAAAAGATCTGTTAAGACATAAGATGCAGGATCGTCAATATTTTGACAGCGGAGATTATGCATTGAAAAAGGCCGG < SRR13385772.727565/300‑1 (MQ=60)
|
AAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATTCATGTGCAACATGATATAACTTAACACTCTGGTTTGTTTATATAGTGTTAACTTGGTCTTTTAAACCGTCGAAAATATTTTATCCTTCCTTCCATTTAGTTGGAACCATTTTCTAGTTCTTCGTAAAATCCGCAGTCAGCGCAGGAGAAAATAGAACGAGACAAATGATCTTTTAAATTACAGGTTATCGCGGGAGAATATTGGGGTTCAGAAATACAACACATATAAACAAAAATACGTACCAAAGAAGTGTTATAAAAGTGATATAACTATGTCAGAGGATCTTTCACCTACAAGCAGCAGGGTGGATTTGAGCAATCCTCATGGGTTTACCAAAGAGGGAGTGGATTTATCGAAGCTGTCACCACAAGAACTAAAATTGTATAAAATGTATGGGAAGCTTCCATCCAAAAAAGATCTGTTAAGACATAAGATGCAGGATCGTCAATATTTTGACAGCGGAGATTATGCATTGAAAAAGGCCGG > BK006934/369684‑370268
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |