Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAGGCCGGAGTCATTAAGTCGGATGACGTTATCGTGAATAATTCTAGTAATAATCTACCAGTGACCAATCCTAGCGGTTTAAGAGAGTCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTA‑TTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATAATATATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACATTGTGAGCAAGTGAACGCACTAAGGGCACCAATTACTAGACCTGGGA  >  BK006934/370261‑370864
                                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                            
AAGGCCGGAGTCATTAAGTCGGATGACGTTATCGTGAATAATTCTAGTAATAATCTACCGGTGACCAATCCGAGCGGTTTAAGAGAGTCTATTATTAGAAGACGTATG‑‑‑AGTAGTAGTGGTGGCGATGCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTA‑TTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATAATATATATATATATATATGTA                                                                                                                                                                                                                                                                                                              <  SRR13385772.1149024/301‑1 (MQ=60)
     GGGAGTCATTAAGTAGGATGACGTTATCGTGAATAATTCTAGTAATAATCTACCCGTGACCAATACTAGTGGTTTAAGAGAGTCTATTCTTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTAAAGTGGACATACACCAAGATCTCCAAATAAATGCCTAATGAAGGAATGATATTATGTGGTA‑TTACTTTTTTTTTATCATCACTAGATTCGGATAAGCCCTTGCATTTTCAATATTAAATTACCAAATAATATATATATATATATATATGTA                                                                                                                                                                                                                                                                                                            <  SRR13385772.1141998/301‑1 (MQ=60)
                          CGTTATCGTGAATAAGTCTAGTAATAATCTACCAGTGACCAAATCTATCGGTTTAAGAGAGTCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGTAATGATATTATGTTGTA‑TTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTA                                                                                                                                                                                                                                                                                   <  SRR13385772.267475/301‑1 (MQ=60)
                                           GTAGTAATAAACTACCAGTGAACAATCCTAGCGGTTTAAGAGAGTCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTA‑TTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑‑‑ATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTG                                                                                                                                                                                                                                                                 <  SRR13385772.1121260/300‑1 (MQ=60)
                                                                                AAGAGAGTCTATTATTAGACGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGAAAAGGAAGTATCTCAAGTGGACCTCCACAAAGATCTCCAAATAAATGTCTAATGATTGAATGATATTATGTGGTA‑TTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCAGCCTTTTGATTTACTCACATGCTTAGTAAA                                                                                                                                                                                                                             <  SRR13385772.234881/301‑1 (MQ=60)
                                                                                AAGAGAGTCTATGATTAGAAGACTTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGATACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGTTA‑TTACGTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCGTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATACTTAGTAA                                                                                                                                                                                                                              <  SRR13385772.1239458/300‑1 (MQ=60)
                                                                                   AGAGTCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTA‑TTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATG                                                                                                                                                                                                                           >  SRR13385772.750481/1‑300 (MQ=60)
                                                                                             ATTAGAAGACGTATTAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTTGTA‑TTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCGTTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGA                                                                                                                                                                                                                <  SRR13385772.557559/301‑1 (MQ=60)
                                                                                                                ggaggagggggtgcgattctaatgtgagacaaagaaagagCTCAAGTGGACCTCCACCAAGATCGTCAAATAAATGAATAATGAAAGAATTATAGTAAGTGGTAGTTCGTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATAATATATATATATATATAGATA‑‑‑‑TATGTATGGTATACCTTGTGTTACTGATGTGTTTTGTGTGGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAA                                                                                                                                                                                              <  SRR13385772.704121/261‑1 (MQ=60)
                                                                                                                  AGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTA‑TTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTA                                                                                                                                                                                               >  SRR13385772.781866/1‑297 (MQ=60)
                                                                                                                   GTAGTGGTGGCGATTCTATCTCGCGACAAGGAAGTATCTCAAGTGGACCTCCACCCAGCTCCCCAAATCACTGACTCCTGCAGGCATGATCTTATGTGGTC‑TTACTTTTTTTTTATCATCCCTAGCTTCGGCTACGCCCTTGCATTTTCACTATTCAATTACCACATA‑‑‑‑‑‑ATATATATATATATCTATGTATGTATGGTATACCTTGTGTTCCTGCTGTGTTTTTTGTTGCCGTCATCCTTTTGATTTACTCACCTGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTT                                                                                                                                                                                         >  SRR13385772.874620/1‑300 (MQ=60)
                                                                                                                                              AAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATTTTATGTGGTA‑TTACTTTTTTTTTATCATCACTAGCTTCGGCTACGCCCTTGCATTTTCAATATTCAATTAACAAATA‑‑‑‑‑‑ATATATATATATATATCTGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACCTGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCC                                                                                                                                                             >  SRR13385772.1277455/1‑301 (MQ=60)
                                                                                                                                                                     CCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTA‑TTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTGAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGA                                                                                                                                         <  SRR13385772.1201752/300‑1 (MQ=60)
                                                                                                                                                                                                   AAGGAATGATATTATGTGGTA‑TTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCCATTACCAAATA‑‑‑‑‑‑ATATATCTATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCATAAAAATCAGCTCAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCACCTTGCTGAACATCAAA                                                                                                         >  SRR13385772.1152257/1‑300 (MQ=60)
                                                                                                                                                                                                                            CTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAA                                                                                                                                                                                                                             >  SRR13385772.1118343/1‑162 (MQ=60)
                                                                                                                                                                                                                             TTTTTTTTTATCATCACTAGCTTCTGCTAATCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTATTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTTAAGCCTAAAAATCAGCTAAGTTTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTTAACATCAAAAACCCAAAAAAATAGAAATCTAT                                                                                  <  SRR13385772.483723/300‑1 (MQ=60)
                                                                                                                                                                                                                                            ACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTTAATAAATATATGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCC                                                                     >  SRR13385772.350930/1‑298 (MQ=60)
                                                                                                                                                                                                                                            ACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑‑‑ATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACAAATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCACCTTGCTGAACATCAAAAACCCAAAAAAATAGCAATCTATAAAATACAACGCCAGTG                                                                 >  SRR13385772.1174867/1‑300 (MQ=60)
                                                                                                                                                                                                                                                     GGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATACATATATATGTATGTATGGTATACCTTGTGTTACTGATTTGTTTTTTGTTTACGTCATCCTTTTTATTTACTCACATGCTTAGTAAATGAAGGTTGTTTAGTCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTTAACGCCCCTATGGGAACACTTAATTTAATAAATATCTGCCCAACTTGCCGAACATCAAAAACCCAAAAAAATAGAAAACTATAAAATACAACGCCAGTGACAACTGC                                                         >  SRR13385772.979426/1‑301 (MQ=60)
                                                                                                                                                                                                                                                        AAAGCCCGTGCATTTTCAATATTTAATTAACAAATA‑‑ATATATATATATATATATATATGTATGTATGGTATACCTTGGGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTGAGTAAATGAAGGTTGTGGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACGTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCG                                                        <  SRR13385772.343776/301‑1 (MQ=60)
                                                                                                                                                                                                                                                         AAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑‑‑ATATATAGATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGATGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCGATGGTAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAA                                                   <  SRR13385772.1063325/301‑1 (MQ=60)
                                                                                                                                                                                                                                                             CCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACA                                                 <  SRR13385772.903668/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                  CATTTTCAATATTGAATGACCAAATA‑‑‑‑ATATATATATATATAGATATGTATGTATGGTAGACCTTGTGTTACTGATGTGTTGTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGGTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACATTGTG                                            <  SRR13385772.1019588/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                  CATTTTCAATATTCAATTACAAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTTACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGCAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACATTGTG                                            >  SRR13385772.966005/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                           TATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTACTTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACATTGTGAGCAAGTG                                    >  SRR13385772.1026926/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                            AGTCAATTACCAAATA‑‑ATATATATATATATAGATATATGGATGTATGGTATACCTTGTGTTACTGATGTGGTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGGAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACAGCGATACTAAGCATTGAACGCCCGTATGGGAACACTTAAGTGAGTAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAGAGAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACATTGTGAGCAAGT                                     <  SRR13385772.869059/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                             TTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACACAAAAAAATAGAAATATATAAAATACAAAGCCAGTGACAACTGCGAGAAACATTGTGAGCAAGTGAAC                                 >  SRR13385772.1219931/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                           TATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTCTGTTGACGTCATCCTTTTGATTTACTCACATTCTTAGCAAATGAAGGATGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCAT                                                                                                                                                                      >  SRR13385772.29740/1‑142 (MQ=60)
                                                                                                                                                                                                                                                                                                                ATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGTTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACATTGTGAGCAAGTGAACGCACTAAGGGCACCAATTACTAGACCTGGGA  <  SRR13385772.821371/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                            
AAGGCCGGAGTCATTAAGTCGGATGACGTTATCGTGAATAATTCTAGTAATAATCTACCAGTGACCAATCCTAGCGGTTTAAGAGAGTCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTA‑TTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATAATATATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACATTGTGAGCAAGTGAACGCACTAAGGGCACCAATTACTAGACCTGGGA  >  BK006934/370261‑370864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑