Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGGAGTCATTAAGTCGGATGACGTTATCGTGAATAATTCTAGTAATAATCTACCAGTGACCAATCCTAGCGGTTTAAGAGAGTCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATAATATATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACATTGTGAGCAAGTGAACGCACTAAGGGCACCAATTACTAGACCTG  >  BK006934/370266‑370861
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                         
CGTAGTCATTAAGTCGTATGACGTTATCGTGAATAATTCTATTTATAAGCTACCAGTTACCAATCCTAGCTGTTTAAGAGAGTCTATTATTAGGAGACGTATGAGGAGTAGTAGTGGTGGCTATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGTTATTACTTTTTTTTTATCATCACTAGCTGCTGCTAAGCCCTTGCATTGTCAATATTCAATTACCAAATAATATATATATATATATATATGTA                                                                                                                                                                                                                                                                                                         <  SRR13385771.1215016/301‑1 (MQ=60)
CGGAGTCATTAAGTCGGATGACGTTATCGTGAATAATTCTAGTAATAAGCTACCAGTGACCAATCCTAGCGGTTTAAGAGAGTCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGAGCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTATTACTTTTTTTTTAGCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAAGTACCAAATAATATATATATATATATATATGTA                                                                                                                                                                                                                                                                                                         <  SRR13385771.620397/301‑1 (MQ=60)
    GTCATTAAGTCGGATGACGTTATCGTGAATAATTCTAGTAATAATCTACCAGTGACCAATCCTAGCGGTTTAAGTGAGTCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑‑‑ATATATATATATATATATGTATGTATG                                                                                                                                                                                                                                                                                               <  SRR13385771.621079/301‑1 (MQ=60)
      CATTAAGTCGGATGACGTTATCGTGAATAATTCTAGTAATAATCTACCAGTGACCAATCCTAGCGGTTTAAGAGAGTCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATAATATATATATATATATATATGTATGTATG                                                                                                                                                                                                                                                                                                   >  SRR13385771.543727/1‑301 (MQ=60)
         TAAGTCGGATGACGTTATCGTGAATAATTCTAGTAATAATCTACCAGTGACCAATCCTAGCGGTTTAAGAGAGTCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGT                                                                                                                                                                                                                                                                                             <  SRR13385771.1474762/300‑1 (MQ=60)
                  TGACGTTATCGTGAATAATTCTAGTAATAATCTACCAGTGACCAATCCTAGCGGTTTAAGAGAGTCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTG                                                                                                                                                                                                                                                                                   >  SRR13385771.17673/1‑301 (MQ=60)
                               AATAATTCTAGTAATAATCTACCAGTGACCAATCCTAGCGGTTTAAGAGAGTCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTT                                                                                                                                                                                                                                                                      <  SRR13385771.1663361/301‑1 (MQ=60)
                                               ATCTACCAGTGACCAATCCTAGCGGTTTAAGAGAGTCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATC                                                                                                                                                                                                                                                      >  SRR13385771.960220/1‑301 (MQ=60)
                                                 CTACCAGTGACCAATCCTAGCGGTTTAAGAGAGTCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCT                                                                                                                                                                                                                                                    >  SRR13385771.1430471/1‑301 (MQ=60)
                                                         GACCAATCCTAGCGGTTTAAGAGAGTCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTT                                                                                                                                                                                                                                            <  SRR13385771.911889/301‑1 (MQ=60)
                                                                                  TCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATAATATATATATATATATATA‑‑‑‑‑‑TATGTATGTTATACCTACTGTTACTGATGTGTTTGTTGTTTATTTCATCCTTTCTTTTTACTCACATGCTTAGTAAATAAATGT                                                                                                                                                                                                                   >  SRR13385771.1823598/1‑299 (MQ=60)
                                                                                                            TAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTA                                                                                                                                                                                            >  SRR13385771.406110/1‑298 (MQ=60)
                                                                                                                                                TATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAAGGACTAATGAAGGAATGATATTATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTAT                                                                                                                                                      <  SRR13385771.814920/300‑1 (MQ=60)
                                                                                                                                                         TGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTCAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGCGAACACTT                                                                                                                                            >  SRR13385771.1416603/1‑301 (MQ=60)
                                                                                                                                                                                               AGGAATGATATTATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAA                                                                                                      <  SRR13385771.109366/301‑1 (MQ=60)
                                                                                                                                                                                                      ATATTATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTACACATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACCCTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCA                                                                                                >  SRR13385771.405280/1‑300 (MQ=60)
                                                                                                                                                                                                           ATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATCTATGTATGCATGGTATACCTTGTGTTACTGCTGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTCGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAATATTTACACATCGATACTACTCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCACAAACCCAcaaac                                                                                           >  SRR13385771.1755934/1‑295 (MQ=60)
                                                                                                                                                                                                                  ATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCTTCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGCGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCACTCTGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAACCCCAAAAAAATAGAAAC                                                                                   >  SRR13385771.826510/1‑301 (MQ=60)
                                                                                                                                                                                                                    TACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGATTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGAAATC                                                                                  <  SRR13385771.769693/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                            TTACCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTTAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGCAACATTGTGAGCAAGTGGACGCACC                         >  SRR13385771.70790/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                               CCAAATA‑‑ATATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACATTGTGAGCAAGTGAACGCACTA                        <  SRR13385771.23797/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                               CCAAATA‑‑‑‑ATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTGGACGTCATCCTTTTGATTTACTCACATGCTTATTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATCTACACATCGATACTAATCATTGAACGCCCCTATTGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGAAATCGATAAAATACAACTCCAGTGACAACAGCGAGAAACATCGTGATCAACTGAACACACTAA                       >  SRR13385771.423912/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                                        ATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACATTGTGAGCAAGTGAACGCACTAAGGGCACCAATTACTAGACCTG  <  SRR13385771.1702481/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                         
CGGAGTCATTAAGTCGGATGACGTTATCGTGAATAATTCTAGTAATAATCTACCAGTGACCAATCCTAGCGGTTTAAGAGAGTCTATTATTAGAAGACGTATGAGTAGTAGTAGTGGTGGCGATTCTATCTCGAGACAAGGAAGTATCTCAAGTGGACCTCCACCAAGATCTCCAAATAAATGACTAATGAAGGAATGATATTATGTGGTATTACTTTTTTTTTATCATCACTAGCTTCGGCTAAGCCCTTGCATTTTCAATATTCAATTACCAAATAATATATATATATATATATATATATGTATGTATGGTATACCTTGTGTTACTGATGTGTTTTTTGTTGACGTCATCCTTTTGATTTACTCACATGCTTAGTAAATGAAGGTTGTTGAGGCCTAAAAATCAGCTAAGATTTACACATCGATACTAATCATTGAACGCCCCTATGGGAACACTTAATTGAATAAATATCTGCCCAACTTGCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACATTGTGAGCAAGTGAACGCACTAAGGGCACCAATTACTAGACCTG  >  BK006934/370266‑370861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑