Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CATATCGATTTAACAACTGATAAAGTGCCCAACAGACGGTACTGACACTGATCCACTCTCTGGCATGTATACCACCTGTGATAACAATAGTCTTCTTTTCCGGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGTGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATT  >  BK006934/369185‑369782
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                           
CATATCGAGTTAACAACTGATAAAGTGCCCAACAGACGGTACTGACACTGATCCACTCTCTGGCATGTATACCACCTGTGATAACAATAGTCTTCTTTTCCGGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGGATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGC                                                                                                                                                                                                                                                                                                           <  SRR13385772.738067/301‑1 (MQ=60)
          TAACAACTGATAAAGTGCCCAACAAACGGTACTGACACTGATCCACTCTCTGGCATGTATACCACCTGTGATAACAATAGTCTTCTTTTCCGGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGCAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTG                                                                                                                                                                                                                                                                                                  >  SRR13385772.101983/1‑300 (MQ=60)
              AACTGATAAAGTGCCCAACAGACGGTACTGACACTGATCCACTCTCTGGCATGTATACCACCTGTGATAACAATAGTCTTCTTGTCCGGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTG                                                                                                                                                                                                                                                                                             <  SRR13385772.591383/301‑1 (MQ=60)
                                                         CTCTGGCATGTATACCACCTGTGATAACAATAGTCTTCGTGTCCGGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATAGAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATG                                                                                                                                                                                                                                                    <  SRR13385772.222776/299‑1 (MQ=60)
                                                                       CCACCTGTGATAACAATAGTCTTCTTTTCCGGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATCTAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGATCACGAGCCATCATCGGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGCTCACCTGCCCATCAT                                                                                                                                                                                                                                    >  SRR13385772.215204/1‑301 (MQ=60)
                                                                         ACCTGTGATAACAATAGTCTTCTTTTCCGGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTT                                                                                                                                                                                                                                  >  SRR13385772.539470/1‑301 (MQ=60)
                                                                                  AACAATAGTCTTCTTTTCCGGGTTGGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATT                                                                                                                                                                                                                                   <  SRR13385772.907148/291‑1 (MQ=60)
                                                                                                         TTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCACCCCAACTGGCAAAGCTTCTTTCTAGAAGATCCAACCACATCTAAATAGTATCCAGGTCCATGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTCTTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAAT                                                                                                                                                                                                  >  SRR13385772.966284/1‑301 (MQ=60)
                                                                                                                      GTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTA                                                                                                                                                                                     <  SRR13385772.1044665/301‑1 (MQ=60)
                                                                                                                        TTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAACTAGTATCCCGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATT                                                                                                                                                                                   >  SRR13385772.1081848/1‑301 (MQ=60)
                                                                                                                                   TGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATT                                                                                                                                                                                                                   <  SRR13385772.29778/258‑1 (MQ=60)
                                                                                                                                    GCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCC                                                                                                                                                                        <  SRR13385772.62443/300‑1 (MQ=60)
                                                                                                                                                                 GTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCG                                                                                                                                           >  SRR13385772.495058/1‑300 (MQ=60)
                                                                                                                                                                       CCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGCAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTAAGCGGTGCGATCACAT                                                                                                                                    >  SRR13385772.565689/1‑301 (MQ=60)
                                                                                                                                                                                  CACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGACCACGAGCCATCATCTGACTTGTAGGCAATGTATATTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGG                                                                                                                         >  SRR13385772.271811/1‑301 (MQ=60)
                                                                                                                                                                                        AACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAAAAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAA                                                                                                                   <  SRR13385772.1169124/301‑1 (MQ=60)
                                                                                                                                                                                             AACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTT                                                                                                              >  SRR13385772.207662/1‑301 (MQ=60)
                                                                                                                                                                                                 GGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTTGATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGT                                                                                                            <  SRR13385772.1068084/299‑1 (MQ=60)
                                                                                                                                                                                                    AAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAA                                                                                                       <  SRR13385772.1257391/301‑1 (MQ=60)
                                                                                                                                                                                                                       TCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGT                                                                                    >  SRR13385772.877868/1‑301 (MQ=60)
                                                                                                                                                                                                                                ATATAAATAGTATCCAGGTCCCTGTATTCGTTAAATAAGAAATCGGAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGCGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGT                                                                           >  SRR13385772.31223/1‑301 (MQ=60)
                                                                                                                                                                                                                                                   CCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCT                                                         <  SRR13385772.1291986/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                         ATCGTGATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGT                                  <  SRR13385772.1140365/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                              AATCATTTTCAAAAACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAAC                             <  SRR13385772.527062/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                           AACAGCCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAA                <  SRR13385772.650161/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                CCTGCTCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCC            >  SRR13385772.349140/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                                     CCACGAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACG      <  SRR13385772.1166303/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                         GAGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCGTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATT  <  SRR13385772.79245/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                           
CATATCGATTTAACAACTGATAAAGTGCCCAACAGACGGTACTGACACTGATCCACTCTCTGGCATGTATACCACCTGTGATAACAATAGTCTTCTTTTCCGGGTTTGATTCTGGCTTGTTTCCGGATATATGCAGAGCTTTTAGCTCTCTGCCTTCAAATGTCCTGCCCAAGTGTTCCACTGCAACCAAACTGGGAAAGCTTCTTTCTAGAAGATCCAACCACATATAAATAGTATCCAGGTCCCTGTATTCGTTAAAGAAGAAATCGTAATCATTTTCAAAAACAGCCTGCTCACGTGCCATCATCTGACTTGTAGGCAATGTATTTTGTATCAATTCATTCATGTTATCTATGATCACCTGCCCATCATTTATCTGCTCACCTATTTCTTTAGGCAACTTAATATCAATGAAATTATTGCTTCTCGTCCATACATCATAATCATCTGTCAGCGGTGCGATCACATCTCTTACCAGGGTAGAATAGTTGTCTGAAGTAAACCTGTAAACAGCGTATTCACTGTAATCCTCTTGGAGACCCTGCACAGCACCTGTCACGGCTAGTAAAACGAAAAGAAAACAACCCCACAACGAATT  >  BK006934/369185‑369782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑