Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGGACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCAGTCTGGCCGCATTTTTGACAGCGATCTTTTTTTGTATCAAGACTTCTTCCAATGTCAGGATTTA‑T‑TTTCATGATGTATGGGTGTATCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAGAGAATGCTATGGAAAATA‑‑ATA‑‑TGTAGCAACATAGCCAACTAATTGCCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAAGTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCATAACTTAACTAAAAAGATTAAAAAAAGTCAAAGCTACACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCA  >  BK006934/382889‑383461
                                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                     
GGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATA‑‑TGTgta                                                                                                                                                                                                                                                                                    <  SRR13385771.775054/300‑4 (MQ=60)
              CCTCCCCCTGGCGGAACCCATCCTCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATT                                                                                                                                                                                                                                                                       <  SRR13385771.1601842/301‑1 (MQ=60)
                       GGCGGAACCCATCATCCCTTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTatcat                                                                                                                                                                                                                                                              <  SRR13385771.535238/301‑6 (MQ=60)
                           GAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCA                                                                                                                                                                                                                                                          <  SRR13385771.1908207/301‑1 (MQ=60)
                                           CGAACAACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGT                                                                                                                                                                                                                                           >  SRR13385771.770619/1‑300 (MQ=60)
                                                AACTAAACCGTCAGCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATAATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATT                                                                                                                                                                                                                                     >  SRR13385771.625372/1‑301 (MQ=60)
                                                         GTCGGCGTTGCCGCACCGACGAACGTCTCTCGAGAGGTCGTCTCTCCGTCTGAACATACGCACGGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCC                                                                                                                                                                                                                            <  SRR13385771.21684/301‑1 (MQ=60)
                                                             GCGTTGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGT                                                                                                                                                                                                                        <  SRR13385771.751256/301‑1 (MQ=60)
                                                                 TGCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGCTATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGACACTACTATG‑‑TGTAGCAACATAACCAATTAATTATCATTGCATTAACTTTTGGAAGTACTATTTACAATGCCATGTTTTT                                                                                                                                                                                                                    >  SRR13385771.1822220/1‑301 (MQ=60)
                                                                  GCCGCACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGTACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTA                                                                                                                                                                                                                    <  SRR13385771.1870422/300‑1 (MQ=60)
                                                                     GGACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAAGTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTT                                                                                                                                                                                                                <  SRR13385771.1183758/301‑1 (MQ=60)
                                                                      CACCGACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTG                                                                                                                                                                                                               <  SRR13385771.572639/301‑1 (MQ=60)
                                                                          GACGAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGTATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTAC                                                                                                                                                                                                           >  SRR13385771.1172204/1‑301 (MQ=60)
                                                                             GAACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCA                                                                                                                                                                                                                                                          <  SRR13385771.946568/251‑1 (MQ=60)
                                                                                CGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGATTTATGTTGTTACAGTAgt                                                                                                                                                                                                     >  SRR13385771.855843/1‑299 (MQ=60)
                                                                                    TCTCTAGAGGTCGTTTCTCCGTCTGAACATACGGACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTAAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAgttta                                                                                                                                                                                                  <  SRR13385771.1609668/300‑6 (MQ=60)
                                                                                                     TCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCA                                                                                                                                                                                                                                             >  SRR13385771.303071/1‑240 (MQ=60)
                                                                                                                ATACGCACTGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATAAATTAGCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCG                                                                                                                                                                     <  SRR13385771.279629/301‑1 (MQ=60)
                                                                                                                        TGTTGGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTACAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTT                                                                                                                                                              >  SRR13385771.649508/1‑300 (MQ=60)
                                                                                                                            ggtaaaatgaagaggaagtctgactGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTGTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTCTATGTTGGTACAGTAGTTTATTGACATCCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAAC                                                                                                                                                         >  SRR13385771.1340125/26‑301 (MQ=60)
                                                                                                                            GGTACGATGCAGCGGCGGTCTGACTGCATTTTTGACAGCGATATTTTTTTGTATCAAGACTGCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGGCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAAC                                                                                                                                                         <  SRR13385771.892479/301‑1 (MQ=60)
                                                                                                                                                      CATTTTTGACAGCGATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACA                                                                                                                                >  SRR13385771.881365/1‑300 (MQ=60)
                                                                                                                                                         TTTTGACAGCGATCTTTTTTTGTATCAAGACTTCTACCACTGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAACCGGTTAAATATTGAAAAAGTTTCACAAGAC                                                                                                                            >  SRR13385771.1872306/1‑301 (MQ=60)
                                                                                                                                                                   GATATTTTTTTTTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAA                                                                                                                  <  SRR13385771.1518510/301‑1 (MQ=60)
                                                                                                                                                                   GATATTTTTTTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCA                                                                                                                   >  SRR13385771.1340719/1‑300 (MQ=60)
                                                                                                                                                                            TTGTATCAAGACTTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATC                                                                                                          <  SRR13385771.1765117/300‑1 (MQ=60)
                                                                                                                                                                              GTATCAAGACTTCTACCAATGTCAGGATTTA‑TGTTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATTTAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATGGTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTGCGCTTTCTTAAAACGGTTAAATAGTGAAAAAGTTACACAAGACACGAAATCAAAAAGGATCCAT                                                                                                       <  SRR13385771.1121276/301‑1 (MQ=60)
                                                                                                                                                                                        TTCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTAACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAA                                                                                                                                                                                                                                                                             >  SRR13385771.1820779/1‑125 (MQ=60)
                                                                                                                                                                                         TCTACCAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAACGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAA                                                                                             >  SRR13385771.1281932/1‑300 (MQ=60)
                                                                                                                                                                                              CAATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAG                                                                                       <  SRR13385771.1506931/301‑1 (MQ=60)
                                                                                                                                                                                                ATGTCAGGATTTATT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCCCTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGC                                                                                      >  SRR13385771.1434300/1‑300 (MQ=60)
                                                                                                                                                                                                            atT‑TTTCATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCATAACT                                                                         >  SRR13385771.1289665/3‑301 (MQ=60)
                                                                                                                                                                                                                   CATGATGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCATAACTTAACTA                                                                   <  SRR13385771.322955/301‑1 (MQ=60)
                                                                                                                                                                                                                        TGTATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGCAAATA‑‑ATATGTGTCGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGACATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCATAACTTAACTAAAA                                                                >  SRR13385771.1727058/1‑299 (MQ=60)
                                                                                                                                                                                                                           ATGGGTGTCTCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAATTGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCATAACTTAACTAAAAAGATT                                                           >  SRR13385771.829925/1‑301 (MQ=60)
                                                                                                                                                                                                                                       GATGTGCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATTGAAAATA‑‑ATATGTGTAGCAACATTAACTATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTATTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCATAACTTAACTAAAAAGATTAAAAAAAGTCAA                                               <  SRR13385771.469022/301‑1 (MQ=60)
                                                                                                                                                                                                                                        ATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCAGTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTGCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCATAACTTAACTAAAAAGATTAAAAAAAGTCAAA                                              <  SRR13385771.588435/301‑1 (MQ=60)
                                                                                                                                                                                                                                              GGATGTCACTTTCTTTTATTTTGAAGTTTGGTACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATTCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCATAACTTAACTAAAAAGATTAAAAAAAGTCAAAGCTACA                                        <  SRR13385771.373119/301‑1 (MQ=60)
                                                                                                                                                                                                                                                 TGTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTG                                                                                                                                                                                 >  SRR13385771.250706/1‑161 (MQ=60)
                                                                                                                                                                                                                                                  GTCACTGTCTTTTATTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAAGTAATTATCATGGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTGCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTTGTATAAAAATAGCATATTGCATAACTTAACTAAAAAGATTAAAAAAAGTCAAAGCTACACTG                                     <  SRR13385771.173217/300‑1 (MQ=60)
                                                                                                                                                                                                                                                           TTTTATTTTGAAGTTTGTGACAAAGAATGATATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCATAACTTAACTAAAAAGATTAAAAAAAGTCAAAGCTACACTGGCATACTTTG                           >  SRR13385771.1465970/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                TTTTGAAGTTTGTGACAAAGAATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTT                                                                                                                                                     <  SRR13385771.903167/174‑1 (MQ=60)
                                                                                                                                                                                                                                                                                    AATGCTATGGAAAATA‑‑ATATGTGTAGCAACATAACCAATTAATTATCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAGTTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCATAACTTAACTAAAAAGATTAAAAAAAGTCAAAGCTACACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCA  <  SRR13385771.1140712/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                     
GGTGGAAAGCCTTCCCTCCCCCTGGCGGAACCCATCATCCCGTCGAACAACTAAACCGTCAGCGTTGCCGCACCGACGGACGTCTCTCTAGAGGTCGTCTCTCCGTCTGAACATACGCACTGTTGGTACGATGCAGCGGCAGTCTGGCCGCATTTTTGACAGCGATCTTTTTTTGTATCAAGACTTCTTCCAATGTCAGGATTTA‑T‑TTTCATGATGTATGGGTGTATCGGATGTTCGGATGTCACTGTCTTTTATTTTGAAGTTTGTGACAGAGAATGCTATGGAAAATA‑‑ATA‑‑TGTAGCAACATAGCCAACTAATTGCCATTGCATTAAATTTTGGCAGTACTATTTAAAATGCCATGTTTTATGTTGTTACAGTAAGTTATTGACATTCTTCTGGTGTTGCCCGCTTCGCTTTCTTAAAACGGTTAAATATTGAAAAAGTTTCACAAGACACGAAATCAAAAAGGATCCATTTTGGTATAAAAATAGCATATTGCATAACTTAACTAAAAAGATTAAAAAAAGTCAAAGCTACACTGGCATACTTTGAACTGTTTTTTCAAAGCTGTCTCCA  >  BK006934/382889‑383461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑