Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	6081	0.0	0	0.0%	0	0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCACAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑TTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTCTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAAGTAGCCGTTTCCACG  >  BK006934/384028‑384596

TGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTT                                                                                                                                                                                                                                                                              >  SRR13385771.733561/1‑301 (MQ=60)

         TCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACT                                                                                                                                                                                                                                                                      >  SRR13385771.751245/1‑300 (MQ=60)

          CCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTAC                                                                                                                                                                                                                                                                    >  SRR13385771.1573178/1‑301 (MQ=60)

               GAACGTCCATGCTAGGATTCATAGCCAATTTTTTATCCTATATTTGAGCCTACAAAGCATGAATCACCGACCAAAAGGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACAAAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATTTTTTTGGGGCTATTTTTCTTTTTGGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGA                                                                                                                                                                                                                                                               <  SRR13385771.1647057/301‑1 (MQ=60)

                     CCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCT                                                                                                                                                                                                                                                         <  SRR13385771.465358/301‑1 (MQ=60)

                         GCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTT                                                                                                                                                                                                                                                      <  SRR13385771.824815/300‑1 (MQ=60)

                            AGGATTCATAGCCAATTTTTTAGCCTCTATTTTAAGCTTCAAAGCATGGAGCACCGACCATAAAGTAGCAACAATGAACGATTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑ATGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTT                                                                                                                                                                                                                                                  <  SRR13385771.1561336/301‑1 (MQ=60)

                                     AGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATC                                                                                                                                                                                                                                         <  SRR13385771.583917/301‑1 (MQ=60)

                                          ATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAA                                                                                                                                                                                                                                    <  SRR13385771.1871503/301‑1 (MQ=60)

                                                           TTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGT                                                                                                                                                                                                                   >  SRR13385771.1857483/1‑301 (MQ=60)

                                                             AACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATACACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCATATTGGTAGTTAGCAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCCGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATG                                                                                                                                                                                                                 >  SRR13385771.619341/1‑301 (MQ=60)

                                                                                                 AACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGAC                                                                                                                                                                             >  SRR13385771.1800309/1‑301 (MQ=60)

                                                                                                     ATGAACGCGTCAGGGATGATTGTCGGCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTGGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGG                                                                                                                                                                         <  SRR13385771.569003/301‑1 (MQ=60)

                                                                                                          CGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTT                                                                                                                                                                    >  SRR13385771.1657173/1‑301 (MQ=60)

                                                                                                            CTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGG                                                                                                                                                                  >  SRR13385771.1015590/1‑301 (MQ=60)

                                                                                                                        TTGTCGTCGATTGCATCATAAACGCCATTTTCTGTGTCGTTTTCGTTATTTGTCAATTACTGGTAGTCCTATTGGTAGTTCGAAACGTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATTCCTGCTCTACACAAAT‑CTGTGAAGGGTGCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTA                                                                                                                                                       <  SRR13385771.1862826/300‑1 (MQ=60)

                                                                                                                                                    TTTCTTATTCGTTGTCGTTAGTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATATGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTTTCTACACAAAT‑CTTGGAAGGGTTCAAGCACTACTTAGATGTCCTCTTTTTTGGAAGCATCTGGAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTTGTGTAAGTGTTATCAAGGACGGTGACGTGGTGTATGATAA                                                                                                                           <  SRR13385771.1394030/300‑1 (MQ=60)

                                                                                                                                                      TCTTATTCGTTTTCGTTATTTGTCCATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAAATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATG                                                                                                                         <  SRR13385771.848094/300‑1 (MQ=60)

                                                                                                                                                       CTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGGGGTGTATGATAATGG                                                                                                                        >  SRR13385771.1602469/1‑300 (MQ=60)

                                                                                                                                                          ATTCGTTTTCGTGAGTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATT                                                                                                                     <  SRR13385771.1100779/300‑1 (MQ=60)

                                                                                                                                                             CGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATG                                                                                                                 <  SRR13385771.1466402/301‑1 (MQ=60)

                                                                                                                                                                  TCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAA                                                                                                             >  SRR13385771.1783269/1‑300 (MQ=60)

                                                                                                                                                                      TATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTCCACAAAT‑CTGTGACGGGTTCAAGCACTACTTAGATGGCATATTTTTTGGAAGAATCTGTAATGTGTTCACATTAATGATGGTTTACCAGACTTGGGCTATGACTACAGACGCCGAATTGGAATTTGGTGTAAGTGTTAGCACGGACGGTGAAGTGGTGTATGATAATGGATTTATGTGAAATGCT                                                                                                        >  SRR13385771.1814720/1‑301 (MQ=60)

                                                                                                                                                                         TTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGACTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTAAAAGACTTGGGATATGACTACCGACGACGACTTGGCATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGAGTATGATAATGGATTTATGTGAAATGCTTCT                                                                                                     >  SRR13385771.1211599/1‑301 (MQ=60)

                                                                                                                                                                              AATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGGGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTT                                                                                                >  SRR13385771.108419/1‑301 (MQ=60)

                                                                                                                                                                               ATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTT                                                                                               >  SRR13385771.308662/1‑301 (MQ=60)

                                                                                                                                                                                  ACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTA                                                                                             <  SRR13385771.295678/300‑1 (MQ=60)

                                                                                                                                                                                   CTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACG                                                                                                                                        <  SRR13385771.603161/256‑1 (MQ=60)

                                                                                                                                                                                    TGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGA                                                                                                                       >  SRR13385771.1197206/1‑272 (MQ=60)

                                                                                                                                                                                      GTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGAAGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTCTTACC                                                                                        >  SRR13385771.1729878/1‑301 (MQ=60)

                                                                                                                                                                                                 ggtaggttggatCTTATGTGTCATAGGAGCTATCGGTGTGGGGCTATTTTTCTTGGTAGCAGGTCAGGTAGTTGTTTATGTCTTCTCTACACAAATCTTGT‑AATGGTTCAAGCACTACTGAGATGGCCGCGTTTTGGGATGCATCTGTAATGTGTTCACATTAAGGATGGTTTACAAGACTGGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGTTTACGTTGTGTATGATAATGGAGTTATGTGAAATGCTTCTTTTTGTGATTACCATATATAGAA                                                                              <  SRR13385771.1268902/288‑1 (MQ=60)

                                                                                                                                                                                                             CTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACAATATATAGAAAATAGGTGTATAT                                                                 >  SRR13385771.675147/1‑301 (MQ=60)

                                                                                                                                                                                                                       ATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTA                                                       <  SRR13385771.337534/301‑1 (MQ=60)

                                                                                                                                                                                                                              gtattTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAACGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAAT                                                <  SRR13385771.208576/296‑1 (MQ=60)

                                                                                                                                                                                                                                ATCTTTTTGGTGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATA                                               <  SRR13385771.1840250/300‑1 (MQ=60)

                                                                                                                                                                                                                                                  TTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAACT‑CTGTGAAGGGTTCAAGCACTACTTAGCTGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGCATTTGGTGTAAGTGTTAGCACGGACGGTGACGTGGTGTATGATAATGGATTTCTGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGAATATGACAAACC                            >  SRR13385771.1400047/1‑301 (MQ=60)

                                                                                                                                                                                                                                                     TTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTAGGAATTTGGTGTAGGTGTTAGCAAGGACGGTGACGTGGCTTATGATAATGGATTTATGTGAACTGATTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTAAATGTAATAAGAAGGACTATGACAAACCCA                          >  SRR13385771.1059581/1‑300 (MQ=60)

                                                                                                                                                                                                                                                          AGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGT                     <  SRR13385771.1876703/300‑1 (MQ=60)

                                                                                                                                                                                                                                                             AGGACAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACTACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGTACTATGACAAACCAAAGAGTGAAA                 <  SRR13385771.249/301‑1 (MQ=60)

                                                                                                                                                                                                                                                              GGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGAGTTGGGATATGACTACCGACGACGACTTGGAATTGGGTGTAAGCGTTAGCAAGGACGGTGACGTGGTGGATGATATTGGATTTATGTGAATTGCTTCTTTTTTGTATTACCATATCTAGAACATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAAC                >  SRR13385771.437190/1‑301 (MQ=60)

                                                                                                                                                                                                                                                                            TTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTACGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACG  >  SRR13385771.1743980/1‑301 (MQ=60)

                                                                                                                                                                                                                                                                            TTATGCCTTCTCTACACAAAT‑CTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCAC   <  SRR13385771.885473/300‑1 (MQ=60)

TGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCACAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAAT‑TTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTCTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAAGTAGCCGTTTCCACG  >  BK006934/384028‑384596

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`