Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACAAAGTCCATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCACAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATTTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTCTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACA  >  BK006934/384018‑384566
                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                         
ACAAAGTCCATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATGTGTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATGCGTTTTCGTTATTTGTCAATGACTGGTATCCCTATTGGTAGTGCGAAACTTATGGGTCAGAGGAGCTATCTTTGTGGGGCTATTTTGCTTTGTAGCAGGCCAGGTATTGGTTGATGCCTTCTCTACACAAATCT                                                                                                                                                                                                                                                          <  SRR13385772.1185781/301‑1 (MQ=60)
         ATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACTCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGT                                                                                                                                                                                                                                                 >  SRR13385772.335118/1‑301 (MQ=60)
                                             ATAGCCAATTTGTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCA                                                                                                                                                                                                             <  SRR13385772.594143/301‑1 (MQ=60)
                                                    ATTTTTTAGCCTATATTTTAACCTGTAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTGTCGTTATTTGGCGATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGTGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCGTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAA                                                                                                                                                                                                      <  SRR13385772.959607/301‑1 (MQ=60)
                                                             CCTCTATTTTAACCTTCAAAGCATGGATCACCGACCCTAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCAC                                                                                                                                                                                             >  SRR13385772.307061/1‑301 (MQ=60)
                                                             CCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCCCTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCAC                                                                                                                                                                                             >  SRR13385772.223172/1‑301 (MQ=60)
                                                                                 GCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACA                                                                                                                                                                            >  SRR13385772.360219/1‑298 (MQ=60)
                                                                                                                                      CGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATA                                                                                                                                                                >  SRR13385772.449145/1‑257 (MQ=60)
                                                                                                                                               AATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGAC                                                                                                           <  SRR13385772.628152/301‑1 (MQ=60)
                                                                                                                                                                              GTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATG                                                                            >  SRR13385772.1219375/1‑301 (MQ=60)
                                                                                                                                                                               TTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGG                                                                           >  SRR13385772.897536/1‑301 (MQ=60)
                                                                                                                                                                                      TCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAACTCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGCAGCATCTGTAATGTGTTCACATTAATGATGGTTTACACGACTTGGGATATGACTACCGACGACGACTTGGAATCTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGCGTATGATCATGGATTTATGTGCCATGCTTCTTTT                                                                    >  SRR13385772.1083646/1‑301 (MQ=60)
                                                                                                                                                                                       CAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACACGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTCAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTT                                                                   >  SRR13385772.844886/1‑301 (MQ=60)
                                                                                                                                                                                           TACTGGTATCCCTATTGGTAGTTCGAAACTTAAGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTT                                                                <  SRR13385772.916345/300‑1 (MQ=60)
                                                                                                                                                                                                     CCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATA                                                     <  SRR13385772.414982/301‑1 (MQ=60)
                                                                                                                                                                                                                                CATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTT                          <  SRR13385772.1163574/301‑1 (MQ=60)
                                                                                                                                                                                                                                 ataggagcgagaggtttggggctaggggtctggGTAGCAGGACAGGTATGGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTCGACTTTGGTGTAAGTGTTAGCACGGAGCGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTT                          >  SRR13385772.522260/34‑300 (MQ=60)
                                                                                                                                                                                                                                                 TGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGA          <  SRR13385772.1192833/300‑1 (MQ=60)
                                                                                                                                                                                                                                                         TTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACA  >  SRR13385772.820279/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                                    CACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCT                                                                       >  SRR13385772.662675/1‑188 (MQ=60)
                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                         
ACAAAGTCCATGCTGTTGGTCCGTGGAACGTCCATGCTAGGATTCATAGCCAATTTTTTAGCCTCTATTTTAACCTTCAAAGCATGGATCACCGACCATAAAGTAGCAACAATGAACGCTTCAGGGATGATTGTCGTCGTTTACATAATAAACGCCATTTTCTTATTCGTTTTCGTTATTTGTCAATTACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCACAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATTTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTCTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACA  >  BK006934/384018‑384566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑