Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCACAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATTTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTCTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAAGTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCTTCTTTAGTCAATTGAAAACAAAACTTCTTAATCTGTTTCCAATGTTTTAAAGTCGCTCATATGTTC  >  BK006934/384205‑384794
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                   
TACTGGTATCCCTATTGGTAGTTCGAAACTTAAGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTT                                                                                                                                                                                                                                                                                                    <  SRR13385772.916345/300‑1 (MQ=60)
          CCTATTGGTAGTTCGAAACTTATGGGTCATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATA                                                                                                                                                                                                                                                                                         <  SRR13385772.414982/301‑1 (MQ=60)
                                     CATAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTT                                                                                                                                                                                                                                                              <  SRR13385772.1163574/301‑1 (MQ=60)
                                      ataggagcgagaggtttggggctaggggtctggGTAGCAGGACAGGTATGGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTCGACTTTGGTGTAAGTGTTAGCACGGAGCGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTT                                                                                                                                                                                                                                                              >  SRR13385772.522260/34‑300 (MQ=60)
                                                      TGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGA                                                                                                                                                                                                                                              <  SRR13385772.1192833/300‑1 (MQ=60)
                                                              TTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATCTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACA                                                                                                                                                                                                                                      >  SRR13385772.820279/1‑300 (MQ=60)
                                                                                                                     AAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGAGTACACTTTGAC                                                                                                                                                                              <  SRR13385772.353171/301‑1 (MQ=60)
                                                                                                                                                 CTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTCTTAACGGCTTGTGAACACATTGACAGTCAATCAGCGTAGTGACTTCTTTTAT                                                                                                                                                  >  SRR13385772.479224/1‑301 (MQ=60)
                                                                                                                                                                         GTTCACATTAATGATGGTTTACAAGACTTGGGCTATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGCAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTCTACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAAATAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATAAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATA                                                                                                                           >  SRR13385772.928467/1‑300 (MQ=60)
                                                                                                                                                                               ATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCAT                                                                                                                            <  SRR13385772.220482/293‑1 (MQ=60)
                                                                                                                                                                                  AATGATGGTTTACAAGACGTGGGATAGGACTACCGGCGACGGCTTGGAATTTGGTGTAGGTGTTAGCAAGGACGGTGACGTGGTGTATGTTAATGGATTTATGTGAAATGCGTCTTTTGTTTATTACCATATATAGAAAATAGGTGTATACTAGTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGT                                                                                                                 <  SRR13385772.1084073/301‑1 (MQ=60)
                                                                                                                                                                                                         ATATGACTACCGACGACGACTTGGAATGTGTTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAATCAGGACT                                                                                                                                                                                                                                            >  SRR13385772.167735/1‑155 (MQ=60)
                                                                                                                                                                                                                          GACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATT                                                                         >  SRR13385772.651374/1‑301 (MQ=60)
                                                                                                                                                                                                                               GGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCT                                                                    >  SRR13385772.1122155/1‑301 (MQ=60)
                                                                                                                                                                                                                                                TTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTCTGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACAATTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTACGTAAGATGCCAAATTATCCTTCTTTAGCCAATTGAA                                                    >  SRR13385772.828544/1‑300 (MQ=60)
                                                                                                                                                                                                                                                    CAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCTTCTTTAGCCAATTGAAAACA                                                >  SRR13385772.232438/1‑300 (MQ=60)
                                                                                                                                                                                                                                                           GGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTT                                                                                             <  SRR13385772.114656/248‑1 (MQ=60)
                                                                                                                                                                                                                                                                    GTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTCAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGAGACTTCTTTTATCAGCGGAAACAACCATATACATAAAAGAAACGTGATGGTCGTTCCAGTAGTTTATTAAGTAAGATGAAAAATTATCCTTCTTTAGCCAATTGAAAACAAAACATCTTAATCTGTT                               >  SRR13385772.548549/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                           ATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTGAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTGTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCTTCTTTAGCCAATTGAAAACAAAACTTCTTAATCTGTTTCCAAT                         <  SRR13385772.269801/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                             AATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGCTGGTCGTTCCCGTAGGTTATTAAGTAAGATGACAAATTATCCTTCTTTAGCCAATTGAAAACAAAACTTCTTAATCTGTTTCCAATGTT                      >  SRR13385772.619356/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                  TCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACAAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTATGTACACTTTGACAGTCAATCCGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAAAGTGATGGACGTTACCGTAGTTTATTAAGTAAGATGACAAATTATCCTTATTTAGCCAATTGAACACAAAACTTCTTAATATGTTTCAAATGTTTTACAGTCGCTCATATGTTA  >  SRR13385772.1080299/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                   
TACTGGTATCCCTATTGGTAGTTCGAAACTTATGGGTCACAGGAGCTATCTTTTTGGGGCTATTTTTCTTTGTAGCAGGCCAGGTATTGGTTTATGCCTTCTCTACACAAATTTGTGAAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTCTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAAGTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCTTCTTTAGTCAATTGAAAACAAAACTTCTTAATCTGTTTCCAATGTTTTAAAGTCGCTCATATGTTC  >  BK006934/384205‑384794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑