Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TATTTTTTGAATTATATTTTCGGGTTTTAAGCTAACTCTAGTCATTCCTTACTACATTTTATTGTAACTCTTCAGTAGAGCTAACCACAGTCATTCCTTAATATTTTTTAACACAGATCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTTTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACAAGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTAT  >  BK006934/385342‑385910
                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                                  
TATTTTTTGAATTATATTTTCGGGTTTTAAGCTAACTCTAGTCATTCCTTACTACATTTTATTGTAACTCTTCAGTAGAGCTAACCACAGTCATTCCTTAATATTTTTTAACACAGATCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTATACAGTTATGCTGTCTACACA                                                                                                                                                                                                                                                                               >  SRR13385771.1583564/1‑300 (MQ=60)
   TTTTTGAATTATATTTTCGGGTTTTAAGCTAACTCTAGTCATTCCTTACTACATTTTATTGTAACTCTTCAGTAGAGCTAACCACAGTCATTCCTTAATATTTTTTAACACAGATCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAA                                                                                                                                                                                                                                                                              >  SRR13385771.873379/1‑298 (MQ=60)
                                                           TATTGTAACTCTTCAGTAGAGCTAACCACAGTCATTCCTTAATATTTTTTAACACAGATCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGT                                                                                                                                                                                                                    >  SRR13385771.1572763/1‑300 (MQ=60)
                                                               GTAACTCTTCAGTAGAGCTAACCACAGTCATTCCTTAATATTTTTTAACACAGATCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATAT                                                                                                                                                                                                                <  SRR13385771.129251/300‑1 (MQ=60)
                                                                     CCTCAGTAGAGCTAACCACAGTCATTCCTTAATATTTTTTAACACAGATCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATT                                                                                                                                                                                                          <  SRR13385771.1709389/300‑1 (MQ=60)
                                                                            AGAGCTAACCACAGTCATTCCTTAATATTTTTTAACACAGATCTCTTTCACAGAGTAGACATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTACTTGAAGCCAACAGCAATGGGGAAAAAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCCAGGGTTGTGGTTAAAACGATTTCATCTACTACTCCAAGGGTATATCCGATTACTTTAGC                                                                                                                                                                                                  >  SRR13385771.595758/1‑301 (MQ=60)
                                                                              AGCTAACCACAGTCATTCCTTAATATTTTTTAACACAGATCTCTTTCACAGAGTAGAAATAAATCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGACACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTCCGCCGGCAAGGGTTTTGGTTAAAACGCTTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCT                                                                                                                                                                                                 >  SRR13385771.529494/1‑300 (MQ=60)
                                                                                  AACCACAGTCATTCCTTAATATTTTTTAACACAGATCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTC                                                                                                                                                                                            >  SRR13385771.623509/1‑301 (MQ=60)
                                                                                                   CATATTTTTTAACACAGATCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACT                                                                                                                                                                            >  SRR13385771.1556690/1‑300 (MQ=60)
                                                                                                         TTTTAACACAGATCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATGCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAA                                                                                                                                                                      <  SRR13385771.1456307/300‑1 (MQ=60)
                                                                                                            TAACACAGCTCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCGTTTTATTCACCGTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAG                                                                                                                                                                   <  SRR13385771.694331/300‑1 (MQ=60)
                                                                                                                    ATCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAG                                                                                                                                                            >  SRR13385771.396875/1‑299 (MQ=60)
                                                                                                                                                         ACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTA                                                                                                                     <  SRR13385771.4460/301‑1 (MQ=60)
                                                                                                                                                          AAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAAGTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGTGTATATCCTATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTAC                                                                                                                    <  SRR13385771.1796877/301‑1 (MQ=60)
                                                                                                                                                              TTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGACCATGTTAGTGCTACTCA                                                                                                                 >  SRR13385771.1170560/1‑300 (MQ=60)
                                                                                                                                                                        ATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTTTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGCTTCAACGGTGTCAGCTTCAGCACATGTTAGTACTACTCAAACAAACTCAT                                                                                                      >  SRR13385771.733621/1‑301 (MQ=60)
                                                                                                                                                                          GAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGT                                                                                                                                                                                                                    >  SRR13385771.513495/1‑189 (MQ=60)
                                                                                                                                                                               TTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTC                                                                                               >  SRR13385771.195912/1‑301 (MQ=60)
                                                                                                                                                                                                  CCATATCTTATTCTTTTTATTCACCTTAATTGAAGCAAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACT                                                                            <  SRR13385771.687616/301‑1 (MQ=60)
                                                                                                                                                                                                  CAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGCCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACT                                                                            <  SRR13385771.1568338/301‑1 (MQ=60)
                                                                                                                                                                                                             TCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTT                                                                                                >  SRR13385771.610939/1‑270 (MQ=60)
                                                                                                                                                                                                                   TATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATTCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTCTATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGACAAGATAACAGAGGTTTCAACGCTGTCAGCTTCAGATCATGTTAGTGCTACTCACACAAACTCATTTGTTTCTACTTCTACTGTTTCCACTACCAGTCCAACGATTTC                                                           >  SRR13385771.1778580/1‑301 (MQ=60)
                                                                                                                                                                                                                           TTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGAGGGTATTGTCTACAGTTAGGCTGTCGACACAAAGACTCTTGCGCCGGCAAGGGTGGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGA                                                                                                                                                           <  SRR13385771.1561797/197‑1 (MQ=60)
                                                                                                                                                                                                                              ATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTT                                                <  SRR13385771.1109806/301‑1 (MQ=60)
                                                                                                                                                                                                                                                  GGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACA                            <  SRR13385771.549120/301‑1 (MQ=60)
                                                                                                                                                                                                                                                            AAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACGACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCG                  <  SRR13385771.1277784/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                           GATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTA   <  SRR13385771.739946/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                           GATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGT    <  SRR13385771.1551930/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                             TGGTATTGTCTCCAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATAATACTACAAGGGTATATACGAATACTTTAGCTAATTCAGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGATTTCTACTCCACCTGTTTCCACTATCAGACCAACGATTTCAACTGCTTCTTCAACATCCTCTCGCTCTACATACGATcccgaatcatacaaaagtat  >  SRR13385771.916416/1‑280 (MQ=60)
                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                                  
TATTTTTTGAATTATATTTTCGGGTTTTAAGCTAACTCTAGTCATTCCTTACTACATTTTATTGTAACTCTTCAGTAGAGCTAACCACAGTCATTCCTTAATATTTTTTAACACAGATCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTTTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACAAGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTAT  >  BK006934/385342‑385910

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑