Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTTTGAATTATATTTTCGGGTTTTAAGCTAACTCTAGTCATTCCTTACTACATTTTATTGTAACTCTTCAGTAGAGCTAACCACAGTCATTCCTTAATATTTTTTAACACAGATCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTTTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACAAGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTC  >  BK006934/385345‑385919
                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                                           
GTTTTGAATTATATTTTCGGGGTTTAAGCTAACTCTAGTCATGCCTTACTACATTTTATTGTAACTCTTCAGTAGAGCTAACCACAGTCATTCCTTAATATTTTTGAACACAGATCTCTTTCACAGAGTAGAAATAAGGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAG                                                                                                                                                                                                                                                                                     <  SRR13385772.828363/300‑1 (MQ=60)
          ATATTTTCGGGTTTTAAGCTAACTCTAGTCATTCCTTACTACATTTTATTGTAACTCTTCAGTAGAGCTAACCACAGTCATTCCTTAATATTTTTTAACACAGATCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGC                                                                                                                                                                                                                                                                           <  SRR13385772.211705/300‑1 (MQ=60)
                                           CCTTACTACATTGTATTGTAACTCTTCAGTAGAGCTAACCACAGTCATTCCTTAATATTGTTTAACACAGAGCTCTTTCACAGAGTAGAAATAAAGCCACTCCTATAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTAGTCACCTTAATTGAAGCCAACAGCAATGGTGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATA                                                                                                                                                                                                                                          <  SRR13385772.1273196/300‑1 (MQ=60)
                                                      TTTATTGTAACTCTTCAGTAGAGCTAACCACAGTCAGTCCTTAATATTTTTTAACACAGATCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAAGTTTTCTACAATTTTCAATAGCTTATTCTTTTTATTCACCTGAATTGAAGCCAACAGCAAGGGGGAAACAGTCGAACTTATTACTTCGGATGGGATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACG                                                                                                                                                                                                                                                    <  SRR13385772.1290757/279‑1 (MQ=60)
                                                                                                 ATATTTTTTAACACAGATCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGAGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCAGTCGTTTCTTCCACTAC                                                                                                                                                                                   >  SRR13385772.671067/1‑301 (MQ=60)
                                                                                                                         CACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATACTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAA                                                                                                                                                            <  SRR13385772.553657/300‑1 (MQ=60)
                                                                                                                         CACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTGAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTGCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAA                                                                                                                                                            <  SRR13385772.233560/300‑1 (MQ=60)
                                                                                                                                                        AAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACT                                                                                                                            >  SRR13385772.851612/1‑301 (MQ=60)
                                                                                                                                                          ATTACAAAGAAATGAAATTTAATTTTTCTACAATTCTAAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGAACTGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTATACACAACGACTCTTGCGCCGGCAAGGCTTGTGGTTAAAACGCTATCATATACTACTACACGGGTATATCCGCTTACTTTAGCTACTTACGTCGCTTCTTCCACTCATGACCAGATAACAGAGGTTTCAACGGTGTAAGCTTCAGAACATGTTAGTGCTACTC                                                                                                                           >  SRR13385772.1255100/1‑300 (MQ=60)
                                                                                                                                                             ACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTGAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTTGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAAC                                                                                                                       <  SRR13385772.525761/301‑1 (MQ=60)
                                                                                                                                                                                   TTCTACAATTTTCAATATCTTATTCTTTTTATAAACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTAAAACTAAATACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAAAAGAGGCTACAACGGTGTCAGCTTCAGAACATGTTAGTACTACTCAAACAAACACATTGGTTTCAACTTCT                                                                                                 >  SRR13385772.126128/1‑301 (MQ=60)
                                                                                                                                                                                                      TTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAAGGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAA                                                                                                                                                                                                                                                                     <  SRR13385772.1151058/118‑1 (MQ=60)
                                                                                                                                                                                                                    CACCGTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGGCTACAGTTATGCTGTCTGCACTAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTGCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCT                                                                <  SRR13385772.990226/301‑1 (MQ=60)
                                                                                                                                                                                                                                AGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTGTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACA                                                    <  SRR13385772.11988/301‑1 (MQ=60)
                                                                                                                                                                                                                                        GCAATGGGGAAACAGTCAAACGTAGTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCGTGCGCCGGCAAGGGTTGTGGGTAAAACGATTTCATATACTACGACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTGTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAG                                            <  SRR13385772.942884/301‑1 (MQ=60)
                                                                                                                                                                                                                                                          AACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGA                          <  SRR13385772.760889/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                TTACTGCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGTCTGCAAGGGTTGTGGTTAAATCTATTTCATATACTACGACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACATAGGTTTCAACGGTGTCAGCTTCATAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGAGTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCAT                     <  SRR13385772.77679/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                        GATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCTGCAAGGGTTGTTGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGATGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTA            <  SRR13385772.439686/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                        GATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCCTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCATAACATGTTAGTTCTACTCAAACAAACTCATTGGTTTCTACTTCTACTTTTTCCACTATCAGTCCAACGATTTCAACTGGTTCTTCAACATCCTCTAGCTCTACATACTATATCGAATCATCTCAAAGTA            <  SRR13385772.652365/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                 GTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCG    <  SRR13385772.621090/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                  TCTACAGTTATGCTGTCTACACAAAGACTATTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTACTTCCGTCGTTTCTTCCACTACTGACAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAACCAAACTCATTGGTTTCTACTTCTACTGTTTCCACTCTCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCCTCTCAAAGTATCGAATCGTC  >  SRR13385772.667342/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                                           
TTTTTGAATTATATTTTCGGGTTTTAAGCTAACTCTAGTCATTCCTTACTACATTTTATTGTAACTCTTCAGTAGAGCTAACCACAGTCATTCCTTAATATTTTTTAACACAGATCTCTTTCACAGAGTAGAAATAAAGCCACTCCTTTAACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTTTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACAAGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTC  >  BK006934/385345‑385919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑