Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTTTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACAAGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTGCGTCTTCAGGTTTTCGTTTGACTTCTAGTTCTGCTTTTGTTTCATCTACTGCACCTTTCTCTTCCCAACTTTCTTCATCTTCATCTTCTGAAACATCAT  >  BK006934/385497‑386050
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                         
AAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACT                                                                                                                                                                                                                                                               >  SRR13385772.851612/1‑301 (MQ=60)
  ATTACAAAGAAATGAAATTTAATTTTTCTACAATTCTAAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGAACTGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTATACACAACGACTCTTGCGCCGGCAAGGCTTGTGGTTAAAACGCTATCATATACTACTACACGGGTATATCCGCTTACTTTAGCTACTTACGTCGCTTCTTCCACTCATGACCAGATAACAGAGGTTTCAACGGTGTAAGCTTCAGAACATGTTAGTGCTACTC                                                                                                                                                                                                                                                              >  SRR13385772.1255100/1‑300 (MQ=60)
     ACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTGAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTTGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAAC                                                                                                                                                                                                                                                          <  SRR13385772.525761/301‑1 (MQ=60)
                           TTCTACAATTTTCAATATCTTATTCTTTTTATAAACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTAAAACTAAATACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAAAAGAGGCTACAACGGTGTCAGCTTCAGAACATGTTAGTACTACTCAAACAAACACATTGGTTTCAACTTCT                                                                                                                                                                                                                                    >  SRR13385772.126128/1‑301 (MQ=60)
                                                            CACCGTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGGCTACAGTTATGCTGTCTGCACTAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTGCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCT                                                                                                                                                                                                   <  SRR13385772.990226/301‑1 (MQ=60)
                                                                        AGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTGTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACA                                                                                                                                                                                       <  SRR13385772.11988/301‑1 (MQ=60)
                                                                                GCAATGGGGAAACAGTCAAACGTAGTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCGTGCGCCGGCAAGGGTTGTGGGTAAAACGATTTCATATACTACGACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTGTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAG                                                                                                                                                                               <  SRR13385772.942884/301‑1 (MQ=60)
                                                                                                  AACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGA                                                                                                                                                             <  SRR13385772.760889/301‑1 (MQ=60)
                                                                                                        TTACTGCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGTCTGCAAGGGTTGTGGTTAAATCTATTTCATATACTACGACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACATAGGTTTCAACGGTGTCAGCTTCATAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGAGTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCAT                                                                                                                                                        <  SRR13385772.77679/300‑1 (MQ=60)
                                                                                                                GATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCTGCAAGGGTTGTTGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGATGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTA                                                                                                                                               <  SRR13385772.439686/301‑1 (MQ=60)
                                                                                                                GATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCCTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCATAACATGTTAGTTCTACTCAAACAAACTCATTGGTTTCTACTTCTACTTTTTCCACTATCAGTCCAACGATTTCAACTGGTTCTTCAACATCCTCTAGCTCTACATACTATATCGAATCATCTCAAAGTA                                                                                                                                               <  SRR13385772.652365/301‑1 (MQ=60)
                                                                                                                         GTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCG                                                                                                                                       <  SRR13385772.621090/300‑1 (MQ=60)
                                                                                                                          TCTACAGTTATGCTGTCTACACAAAGACTATTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTACTTCCGTCGTTTCTTCCACTACTGACAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAACCAAACTCATTGGTTTCTACTTCTACTGTTTCCACTCTCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCCTCTCAAAGTATCGAATCGTC                                                                                                                                     >  SRR13385772.667342/1‑301 (MQ=60)
                                                                                                                                  TATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGAACAT                                                                                                                             >  SRR13385772.51417/1‑301 (MQ=60)
                                                                                                                                            ACACAAAGACTCTTGCGCCGGCAAGGGTTTTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCT                                                                                                                     <  SRR13385772.306259/299‑1 (MQ=60)
                                                                                                                                                  AGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACGCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGA                                                                                                             <  SRR13385772.1023605/301‑1 (MQ=60)
                                                                                                                                                      TCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGACTCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCC                                                                                                         >  SRR13385772.1288662/1‑301 (MQ=60)
                                                                                                                                                                                            ATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTGCGTCTTCAGGTTTTCGTTTGACTTCTAGTTCTG                                                                    <  SRR13385772.202655/300‑1 (MQ=60)
                                                                                                                                                                                                                gtgctctccgatcCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTGCGTCTTCAGGTTTTCGTTTGACTTCTAGTTCTGCTTTTGTTTCATCTATTGCAC                                               <  SRR13385772.976155/288‑1 (MQ=60)
                                                                                                                                                                                                                                   CCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACAT                                                                                                                                                                       <  SRR13385772.665840/162‑1 (MQ=60)
                                                                                                                                                                                                                                    CGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTGCGTCTTCAGGTTTTCGTTTGACTTCTAGTTCTGCTTTTGTTTCATCTATTGCACCTTTCTCTTCTCAACTTTCT                           <  SRR13385772.128728/301‑1 (MQ=60)
                                                                                                                                                                                                                                             TTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTGCGTCTTCAGGTTTTCGTTTGACTTCTAGTTCTGCTTTTGTTTCATCTATTGCACCTTTCTCTTCTCAACTTTCTTCATCTTC                   <  SRR13385772.721867/300‑1 (MQ=60)
                                                                                                                                                                                                                                                             ATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTCCGTCTTCAGCTTTTCGTTTTACTTCTAGTTCTCCTTTTGTTTCATCCATTGCACCTTTCTCTTCTCAACTTTCTTCATCTTCATCTTCTTAAACATCAC  >  SRR13385772.1045164/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                         
AAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTTTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACAAGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTGCGTCTTCAGGTTTTCGTTTGACTTCTAGTTCTGCTTTTGTTTCATCTACTGCACCTTTCTCTTCCCAACTTTCTTCATCTTCATCTTCTGAAACATCAT  >  BK006934/385497‑386050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑