Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTTTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACAAGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTGCGTCTTCAGGTTTTCGTTTGACTTCTAGTTCTGCTTTTGTTTCATCTACTGCACCTTTCTCTTCCCAACTTTCTTCATCTTCATCTTCTGAAACATCATCCTCATCATTTTCAACATCATCATCATCTGCC  >  BK006934/385495‑386082
                                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                                         
ACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTA                                                                                                                                                                                                                                                                                                 <  SRR13385771.4460/301‑1 (MQ=60)
 AAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAAGTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGTGTATATCCTATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTAC                                                                                                                                                                                                                                                                                                <  SRR13385771.1796877/301‑1 (MQ=60)
     TTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGACCATGTTAGTGCTACTCA                                                                                                                                                                                                                                                                                             >  SRR13385771.1170560/1‑300 (MQ=60)
               ATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTTTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGCTTCAACGGTGTCAGCTTCAGCACATGTTAGTACTACTCAAACAAACTCAT                                                                                                                                                                                                                                                                                  >  SRR13385771.733621/1‑301 (MQ=60)
                      TTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTC                                                                                                                                                                                                                                                                           >  SRR13385771.195912/1‑301 (MQ=60)
                                         CCATATCTTATTCTTTTTATTCACCTTAATTGAAGCAAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACT                                                                                                                                                                                                                                                        <  SRR13385771.687616/301‑1 (MQ=60)
                                         CAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGCCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACT                                                                                                                                                                                                                                                        <  SRR13385771.1568338/301‑1 (MQ=60)
                                                    TCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTT                                                                                                                                                                                                                                                                            >  SRR13385771.610939/1‑270 (MQ=60)
                                                          TATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATTCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTCTATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGACAAGATAACAGAGGTTTCAACGCTGTCAGCTTCAGATCATGTTAGTGCTACTCACACAAACTCATTTGTTTCTACTTCTACTGTTTCCACTACCAGTCCAACGATTTC                                                                                                                                                                                                                                       >  SRR13385771.1778580/1‑301 (MQ=60)
                                                                     ATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTT                                                                                                                                                                                                                            <  SRR13385771.1109806/301‑1 (MQ=60)
                                                                                         GGAAACAGTCAAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACA                                                                                                                                                                                                        <  SRR13385771.549120/301‑1 (MQ=60)
                                                                                                   AAACTTATTACTTCTGATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACGACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCG                                                                                                                                                                                              <  SRR13385771.1277784/301‑1 (MQ=60)
                                                                                                                  GATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTA                                                                                                                                                                               <  SRR13385771.739946/301‑1 (MQ=60)
                                                                                                                  GATGGTATTGTCTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGT                                                                                                                                                                                <  SRR13385771.1551930/300‑1 (MQ=60)
                                                                                                                    TGGTATTGTCTCCAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATAATACTACAAGGGTATATACGAATACTTTAGCTAATTCAGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGATTTCTACTCCACCTGTTTCCACTATCAGACCAACGATTTCAACTGCTTCTTCAACATCCTCTCGCTCTACATACGATcccgaatcatacaaaagtat                                                                                                                                                                              >  SRR13385771.916416/1‑280 (MQ=60)
                                                                                                                                                                           GTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTGCTTCTTCAGGTCTTC                                                                                                                      >  SRR13385771.676770/1‑301 (MQ=60)
                                                                                                                                                                             GGTTAAAACGATTTCATATACTACTACAAGTGTATATCCGATTACTTTGGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTGCGTCTTCAGGTTTTCGT                                                                                                                    <  SRR13385771.604202/301‑1 (MQ=60)
                                                                                                                                                                                         TTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTACAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTGCGTCTTCAGGTTTTCGTTTGACTTCTAG                                                                                                         <  SRR13385771.99239/300‑1 (MQ=60)
                                                                                                                                                                                            ATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACCAACTCATTGGTTTCTACTTCTCCTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTACCTCTACATACGACATCGAATCATCTCAAACTATCGACTCTTCCGGTACCTCTTCCACTACACCCGATCCATCgtcatcctcaggccttcgttcaaccccaagctct                                                                                                     >  SRR13385771.1316030/1‑267 (MQ=60)
                                                                                                                                                                                                          GGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTTTACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAACCGTCAGGTACATCTTCCCCTACAGCCGAACCATCTTCGTCTTCAGGTTTCCGTTTGCCACCTAGTTCTCCTTTTGTTTAATC                                                                                       >  SRR13385771.845456/1‑301 (MQ=60)
                                                                                                                                                                                                              ATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTGCGTCTTCAGGTTTTCGTTTGACTTCTAGTTCTGCTTTTGTTTCATCTATT                                                                                   <  SRR13385771.1704932/301‑1 (MQ=60)
                                                                                                                                                                                                                           TTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTGCGTCTTCAGGTTTTCGTTTGACTTCTTGTTCTGCTTTTGTTTCATCTATTGCACTTTTCTCTT                                                                      >  SRR13385771.551274/1‑301 (MQ=60)
                                                                                                                                                                                                                                  ATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTGCGTCTTCAGGTTTTCGTTTGACTTCTAGTTCTGCTTTTGTTTCATCTATTGCACCTTTCTCTTCTCAACT                                                               <  SRR13385771.110375/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                     GAGGTTTCAACGGTGTCAGCTTCAGAACATGTTAGTTCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGTTACATCTTCCGCTACAGCCGAACCATCTGCGTCTTCAGGTTTTCGTTTGACTTCTAGTTCTGCTTTTGTTTCATCTATTGCACCTTTCTCTTCCCAACTTTCTTCATCTTCATCTTCTGAAACATCATCCTCAC                            >  SRR13385771.1007961/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                 GTGTCAGCTTCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTGCGTCTTCAGGTTTTCGTTTGACTTCTAGTTCTGCTTTTGTTTCATCTATTGCACCTTTCTCTTCTCAACTTTCTTCATCTTCATCTTCTGAAACATCATCCTCATCATTCTCAACAT                <  SRR13385771.422222/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                          TCAGAACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCTACTCCTCAGGTCCATCTTCCGCTCCAGCCGAACCATATACGTCTTCAGGTTTTCGTTcaactcatcattatgcttttccttcatctcttccacctttctcttctcaccttcattcatcttctccttttgacacataatcctcaacattctcaacatacacctcac       >  SRR13385771.655705/1‑193 (MQ=60)
                                                                                                                                                                                                                                                                                               ACATGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTGCGTCTTCAGGTTTTCGTTTGACTTCTAGTTCTGCTTTTGTTTCATCTATTGCACCTTTCTCTTCTCAACTTTCTTCATCTTCATCTTCTGAAACATCATCCTCATCATTCTCAACATCATCCTCATCattc  <  SRR13385771.39931/301‑5 (MQ=60)
                                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                                         
ACAAATTACAAAGAAATGAAATTTAATTTTTCTACAATTTTCAATATCTTATTCTTTTTATTCACCTTAATTGAAGCCAACAGCAATGGGGAAACAGTCAAACTTATTACTTCTGATGGTATTGTTTACAGTTATGCTGTCTACACAAAGACTCTTGCGCCGGCAAGGGTTGTGGTTAAAACGATTTCATATACTACTACAAGGGTATATCCGATTACTTTAGCTAATTCCGTCGTTTCTTCCACTACTGAAAAGATAACAGAGGTTTCAACGGTGTCAGCTTCAGAACAAGTTAGTGCTACTCAAACAAACTCATTGGTTTCTACTTCTACTGTTTCCACTATCAGTCCAACGATTTCATCTGGTTCTTCAACATCCTCTAGCTCTACATACGATATCGAATCATCTCAAAGTATCGAATCGTCAGGTACATCTTCCGCTACAGCCGAACCATCTGCGTCTTCAGGTTTTCGTTTGACTTCTAGTTCTGCTTTTGTTTCATCTACTGCACCTTTCTCTTCCCAACTTTCTTCATCTTCATCTTCTGAAACATCATCCTCATCATTTTCAACATCATCATCATCTGCC  >  BK006934/385495‑386082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑