Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	6081	0.0	0	0.0%	0	0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AACCTCGTTCTTGTAATTACCAAAATCTTCAACAACGCGCTGTTGGAGGTATCTCTATGGATGTGGCTTGAAATATGGATGTCTTGCCTACTTCTACTTCTGGGAAAGGCATTTTTACTCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTC‑GG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATAATCTGTCCTCAAATGAAAACACTAGATATTTTACTATCATGTACAGGAAGCCTACTACCAAAAAGCACAAGACTT  >  BK006936/382882‑383478

AACCTCGTTCTTGTAATTACCAAAAGCTTCAACAACGCTCTGTTTGAGGTATCTCTATGGATGTGGCTTGAAATATGGATGTCTTGCCTACTTCTACTTCTGGGAAAGGCATTTTTACTCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAGGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑T                                                                                                                                                                                                                                                                                                           <  SRR13385771.822660/301‑1 (MQ=60)

       TTCTTGTAATTACCAAAATCTTCAACAACGCGCTGTTGGAGGTATCTCTATGGATGTGGCTTGAAATATGGATGTCTTGCCTACTTCTACTTCTGGGAAAGGCATTTTTACTCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCA                                                                                                                                                                                                                                                                                                       <  SRR13385771.776760/298‑1 (MQ=60)

           TGTAATTACCAAAATCTTCAACAACGGGCTGTTGGAGGTATCTCTATGGATGTGGCTTGAAATATGGATGTCTTGCCTACTTCTACTTCTGGGAAAGGCATTTTTACTCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACG                                                                                                                                                                                                                                                                                                   <  SRR13385771.1108621/298‑1 (MQ=60)

                             CAACAACGCGCTGTTGGAGGTATCTCTATGGATGTGGCTTGAAATATGGATGTCTTGCCTACTTCTACTTCTGGGAAAGGCATTTTTACTCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTAC                                                                                                                                                                                                                                                                               <  SRR13385771.876832/300‑1 (MQ=60)

                               ACAACGCGCTGTTGGAGGTATCTCTATGGATGGTGCTTGAAAGATGGATGTCTTGCCTACGTCTACTTCTGGGAAAGGCATTTTTACTCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑‑AAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAA                                                                                                                                                                                                                                                                           <  SRR13385771.7516/301‑1 (MQ=60)

                                                      CTATGGATGTGGCTTGAAATATTGATGTCTTGCCTACTTCTACTTCTGGGAAAGGCATTTTTACTCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATAT                                                                                                                                                                                                                                                         <  SRR13385771.487989/297‑1 (MQ=60)

                                                              GTGGCTTGAAATATGGATGTCTTGCCTACTTCTACTTCTGGGAAAAGCATTTTTACTCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCC                                                                                                                                                                                                                                              <  SRR13385771.1196044/300‑1 (MQ=60)

                                                                                       CTACTTCTACTTCTGGGAAAGGCATTTTTACTCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAAAGAAAAGATACTACAGGAGGTACAAAAAAGATCGGG‑AA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATCCAGATACCGAAATATGAGAAgcagccatacaaacccccaagaaggatagca                                                                                                                                                                                                                     >  SRR13385771.652590/1‑269 (MQ=60)

                                                                                              TATTTTTGGGAAAGGCATTTTTACTCGTTCGCTTTAAAATATGAATAAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATA                                                                                                                                                                                                              <  SRR13385771.670052/300‑1 (MQ=60)

                                                                                                    TGGGAAAGGCATTTTTACTCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCTAAAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGATTTTGTATTGAAATGGCGGTAATAAGCGTTAAACACAGACGAAGAGAGAAGATACTACAAGAGGTAAAAAACAGCAC‑GGATA‑TATAAAACGGAATTTGATTCCacaaacacacaaacacaacaaccaaaaaacgaaaacaagccatacaaacctccacacaaagacgaaccacacaagaac                                                                                                                                                                                                         >  SRR13385771.1229366/1‑222 (MQ=60)

                                                                                                                      TCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGACAAACTAATCTAAATAACCGCTTAGAATCGAGTTTTTGTATTGAAATGGAGGAAAAAAGCGTTAAACCCCGACGACGGGAGAAGCACCTACAGGAGGTAAAAAAAAGCTC‑GG‑GACTATCCAACGGTCTTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAAAACGCAATCCAAGCCGCCAAGAAGGGCAGGATCAAATACGTACAgaaaactacaacaaaccgc                                                                                                                                                                                     >  SRR13385771.1273922/1‑282 (MQ=60)

                                                                                                                                   TATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTAAAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACAGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGATTGGATCAAAAAAATACACAAAACCCAAACCAACCGACACTCCAGCCAC                                                                                                                                                                         >  SRR13385771.1604741/1‑300 (MQ=60)

                                                                                                                                    ATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGATAATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAACTGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGCTGAATCAAATAAGTACAAACCACACAAACCAACCGCCACTGCAG‑‑‑CAACA                                                                                                                                                                     >  SRR13385771.833834/1‑300 (MQ=60)

                                                                                                                                                       AAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAAAAAGTACACACAACTCAAACTAACCGCCACTCCAGCCACAACAGCCCCTATATCTAAAGC                                                                                                                                                    >  SRR13385771.1425410/1‑301 (MQ=60)

                                                                                                                                                           TAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGCAATGGCGGTAATACGCGTTAAACCACGACGAAGAGAGAAGATCATACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACAAACAACTCAACCCAACCGCCACTGCAGTCCCAACAGCCCCTAAATCTAACGCCAA                                                                                                                                                 >  SRR13385771.1679945/1‑300 (MQ=60)

                                                                                                                                                                CGCGAAGAGCT‑‑AAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACT                                                                                                                                          <  SRR13385771.155528/301‑1 (MQ=60)

                                                                                                                                                                       AGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAAC                                                                                                                                    >  SRR13385771.680596/1‑301 (MQ=60)

                                                                                                                                                                                  AAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCCCGGG‑TA‑TATCAAACGGTATTTGATTACGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTAAAACCAACCGCCAATGCAGTCACAACAGCCCCTATATCTAAAGACAAAGTTACTGTAAACTTGAAAAGA                                                                                                                           >  SRR13385771.926990/1‑300 (MQ=60)

                                                                                                                                                                                          AAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCG                                                                                                                  >  SRR13385771.893793/1‑301 (MQ=60)

                                                                                                                                                                                                    TAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAACAGAAGCATTTCGGCGGGCCCT                                                                                                         >  SRR13385771.1503240/1‑300 (MQ=60)

                                                                                                                                                                                                                TAGAAGCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTT                                                                                             <  SRR13385771.720981/300‑1 (MQ=60)

                                                                                                                                                                                                                 AGAATCGAGTGTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTG                                                                                            <  SRR13385771.1163033/300‑1 (MQ=60)

                                                                                                                                                                                                                            TTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGAATTTCGGCGGGACCTACTTTAAATCTGGCCAAGAAGCCG                                                                                 >  SRR13385771.208963/1‑300 (MQ=60)

                                                                                                                                                                                                                               GTATTGCAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAAT                                                                              >  SRR13385771.674721/1‑300 (MQ=60)

                                                                                                                                                                                                                               GTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGAAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGGACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATA                                                                             <  SRR13385771.1734972/301‑1 (MQ=60)

                                                                                                                                                                                                                                                                  CGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGGG‑TA‑TATCAAACGGTATTGGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCAGTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATAATCTGTCCTCAAATGAAAACACTAGATATTTTACT                                          <  SRR13385771.124792/301‑1 (MQ=60)

                                                                                                                                                                                                                                                                                             AAAAACAGCTCGGG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATAATCTGTCCTCAAATGAAAACACTAGATATTTTACTATCATGTACAGGAAGCCTACTACCAA                >  SRR13385771.293153/1‑300 (MQ=60)

                                                                                                                                                                                                                                                                                                       G‑GG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATAATCTGTCCTCAAATGAAAACACTAGATATTTTACTATCATGTACAGGAAGCCTACTACCAAAAAGCACAAGAC    <  SRR13385771.1804359/301‑1 (MQ=60)

                                                                                                                                                                                                                                                                                                          G‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCATCCAAGAAGGGTTGGATAAAATAAGTACACACAACTCAAACAAACCGCCACTGCAGTCACAACAGCCCCAATATCTAAAGCCAAAGTTACTGTCAAATTGAAAAGAAGCATTTCGGCGGGAAATACTTTAAATCTTGCCAAGAAGCCGAATAATATGTCATCAAATGAAAACACTAGATATTTTACTATCATGTAAAGGAAGCCTACTACCAAAAAGCACAAGACTT  >  SRR13385771.588571/1‑301 (MQ=60)

AACCTCGTTCTTGTAATTACCAAAATCTTCAACAACGCGCTGTTGGAGGTATCTCTATGGATGTGGCTTGAAATATGGATGTCTTGCCTACTTCTACTTCTGGGAAAGGCATTTTTACTCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTC‑GG‑TA‑TATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATAATCTGTCCTCAAATGAAAACACTAGATATTTTACTATCATGTACAGGAAGCCTACTACCAAAAAGCACAAGACTT  >  BK006936/382882‑383478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`