Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	6054	0.0	0	0.0%	0	0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACGCGCTGTTGGAGGTATCTCTATGGATGTGGCTTGAAATATGGATGTCTTGCCTACTTCTACTTCTGGGAAAGGCATTTTTACTCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTC‑G‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATAATCTGTCCTCAAATGAAAACACTAGATATTTTACTATCATGTACAGGAAGCCTACTACCAAAAAGCACAAGACTT  >  BK006936/382916‑383478

ACGCGCTGTTGGAGGTATCTCTATGGATGTGGCTTGAAATATGGATGTCTTGCCTACTTCTACTTCTGGGAAAGGCATTTTTACTCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAAT                                                                                                                                                                                                                                                                         <  SRR13385772.567609/301‑1 (MQ=60)

                      ATGGATGGTGCTTGAAATATGGATGTCTTGCCTACTTCTACTTCTGGGAAAGGCATTTTTACTCGATCGCGTTAATATAGGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTGTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAAC                                                                                                                                                                                                                                                   <  SRR13385772.972029/301‑1 (MQ=60)

                              gggttgaaatatgggtgtattgccttactatacttctggggaaggacattttaactggttgtcgtaaatttagcatgAAGAAAATAAAAAAAAAAACGAGGAGAGCTAAAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCAT                                                                                                                                                                                                                                            <  SRR13385772.655170/224‑1 (MQ=60)

                               GCTTGAAATATGGATGTCTTGGCTACGTCTAATTCTGGGAAAGGCATTTTTACACGGTCGCGTTAATATATGCAACAAGAAAATAAAAAATAAAACGCGAAGAGCTAAAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATT                                                                                                                                                                                                                                           <  SRR13385772.613754/301‑1 (MQ=60)

                               GCTTGAAATATGGATGACTTGCCTACTTCTACTTCTGGGAAAGGCATTTTTACTCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTC                                                                                                                                                                                                                                          <  SRR13385772.758280/301‑1 (MQ=60)

                                                   cccctctttgtctgcggggaaatggATTTTTACTCGAACGCGTTAATATATAGAAGAATAAAATAAAAAAAAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTGAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACTGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGG                                                                                                                                                                                                                      <  SRR13385772.1100550/276‑1 (MQ=60)

                                                        ATTCTACTTCTGGGAAAGGCATTTTTAATCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCA                                                                                                                                                                                                                  <  SRR13385772.693765/300‑1 (MQ=60)

                                                                                TTACTCGATCTCGTTAATATATGCATCAAGAAAAAAAAAAATAAAACGCGAAGAGCTAAAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACC                                                                                                                                                                                           <  SRR13385772.643742/300‑1 (MQ=60)

                                                                                 TACTCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAA                                                                                                                                                                                         <  SRR13385772.693367/300‑1 (MQ=60)

                                                                                                                       AATAAAACGCGAAGAGCTAAAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAA                                                                                                                                                                                                                             <  SRR13385772.943044/227‑1 (MQ=60)

                                                                                                                           AAACTGGAAGAGCT‑AAAAAAAAAAAAGAAATCCTACTATAAATAACCGAGTAGAAGCGAGTTTTGGTATTGAAAGGTCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCAGTCAAGCCGCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGT                                                                                                                                              <  SRR13385772.16871/301‑1 (MQ=60)

                                                                                                                                CGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTG                                                                                                                                         >  SRR13385772.450416/1‑301 (MQ=60)

                                                                                                                                 GAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCA                                                                                                                                                                                                                                         <  SRR13385772.1100880/204‑1 (MQ=60)

                                                                                                                                       CT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCCCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGAAACCGAAATATGAAAACAAGCCATTCAAGCCCCCCACAAGGGTTGGATCAAATAAGTAgaccggcagagcccacgtccgaacaccagtcactcaaacccaacctgcatgccgtctcccgcttgaataaa                                                                                                                                   >  SRR13385772.983056/1‑229 (MQ=60)

                                                                                                                                               AAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATTGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAA                                                                                                                              >  SRR13385772.1138964/1‑298 (MQ=60)

                                                                                                                                                           CCTACGATAAATAACCGATGAGAATCTAGTTTTTGTATTGAAATGGCTGTAATAAGCGTTAAACCTCGACTAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGATAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACGCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCG                                                                                                               <  SRR13385772.400926/301‑1 (MQ=60)

                                                                                                                                                                  AAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTA                                                                                                        <  SRR13385772.132774/301‑1 (MQ=60)

                                                                                                                                                                                           TTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGA                                                                                <  SRR13385772.941213/300‑1 (MQ=60)

                                                                                                                                                                                                  GAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATAATCTG                                                                        >  SRR13385772.1069637/1‑301 (MQ=60)

                                                                                                                                                                                                          GGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGAGCCGACAGGAGGTAAAAAACAGCTC‑GTGTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATGCAAGCCGCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATAATCTGTCCTCAAA                                                                <  SRR13385772.837905/301‑1 (MQ=60)

                                                                                                                                                                                                             AATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATAATCTGTCCTCAAATGA                                                             <  SRR13385772.439384/301‑1 (MQ=60)

                                                                                                                                                                                                                  GCGTTAACCCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATAATCTGTCCTCAAATGAAAACA                                                        <  SRR13385772.139754/301‑1 (MQ=60)

                                                                                                                                                                                                                     TTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACAGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATAATCTGTCCTCAAATGAAAACACT                                                      >  SRR13385772.850486/1‑300 (MQ=60)

                                                                                                                                                                                                                                   AGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCAATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACACCAGCCCCTATATCTAAAGCCAAACTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGCACCTACTTTAAATCTTGACAACAAGCCGAATAATCTGTCCTCAAATGACAACCATAGATATTTTACTATC                                       >  SRR13385772.127499/1‑301 (MQ=60)

                                                                                                                                                                                                                                                 ACAGGAGGTAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACGTTAAATCTTGCCAAGAAGCCGAATAATCTGTCCTCAAATGAAAACACTAGATATTTTACTATCATGTACAGGAAGC                          <  SRR13385772.1186797/300‑1 (MQ=60)

                                                                                                                                                                                                                                                         TAAAAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATAATCTGTCCTCAAATGAAAACACTAGATATTTTACTATCATGTACAGGAAGCCTACTACC                  >  SRR13385772.907780/1‑300 (MQ=60)

                                                                                                                                                                                                                                                            AAAACAGCTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGcagtggcggttggtttgagttgtgtgtactta                                                                                                         >  SRR13385772.940856/1‑178 (MQ=60)

                                                                                                                                                                                                                                                                   CTCGG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATAATCTGTCCTCAAATGAAAACACTAGATATTTTACTATCATGTACAGGAAGCCTACTACCAAAAAGCACA        >  SRR13385772.1073934/1‑300 (MQ=60)

                                                                                                                                                                                                                                                                     cgG‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATAATCTGTCCTCAAATGAAAACACTAGATATTTTACTATCATGTACAGGAAGCCTACTACCAAAAAGCACA        >  SRR13385772.606330/3‑298 (MQ=60)

                                                                                                                                                                                                                                                                         GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTAGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATAATCTGTCCTCAAATGAAAACACTCAATATTTTACTATCATGTAAAGGAAGCCTACTACCAAAAAGCAAAAGACTT  >  SRR13385772.291848/1‑301 (MQ=60)

ACGCGCTGTTGGAGGTATCTCTATGGATGTGGCTTGAAATATGGATGTCTTGCCTACTTCTACTTCTGGGAAAGGCATTTTTACTCGATCGCGTTAATATATGCATCAAGAAAATAAAAAATAAAACGCGAAGAGCT‑AAAAAAAAAAAAGAAAACCTACTATAAATAACCGATTAGAATCGAGTTTTTGTATTGAAATGGCGGTAATAAGCGTTAAACCTCGACGAAGAGAGAAGATCCTACAGGAGGTAAAAAACAGCTC‑G‑GTATATCAAACGGTATTTGATTCCGGTACTACTCAAATGCAGATACCGAAATATGAGAACAAGCCATTCAAGCCTCCAAGAAGGGTTGGATCAAATAAGTACACACAACTCAAACCAACCGCCACTGCAGTCACAACAGCCCCTATATCTAAAGCCAAAGTTACTGTCAACTTGAAAAGAAGCATTTCGGCGGGACCTACTTTAAATCTTGCCAAGAAGCCGAATAATCTGTCCTCAAATGAAAACACTAGATATTTTACTATCATGTACAGGAAGCCTACTACCAAAAAGCACAAGACTT  >  BK006936/382916‑383478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`