Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAATAAAATATCATTGTGCCGTTGCCGCCCTACCTGCCAAGGGTCAAAGAAGGCACCTTTATACGATGCCACCTTTTTATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTGGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCAACATGTACAAAGTGTTGGAACGGTAAAGACCAGTGCAAATCTGATAAAACTTTAAAATAACATGGACAAATTTATGTCCAGGATT  >  BK006938/358979‑359562
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                             
AAATAAAATATCATTGTGCCGTTGCCGCCCTACCTGCCAAGGGTCAAAGAAGGCACCTTTATACGATGCCACCTTTTTATAGTATTCTACTACAGATTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAAAAATGGGTCAATGTTGGTATACTTAGT                                                                                                                                                                                                                                                                                             >  SRR13385771.4162/1‑301 (MQ=60)
AAATAAAATATCATTGTGCCGTTGCCGCCCTACCTGCCAAGGGTCAAAGAAGGCACCTTTATACGATGCCACCTTTTTATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGT                                                                                                                                                                                                                                                                                             >  SRR13385771.552458/1‑301 (MQ=60)
       ATATCATTGTGCCGTTGCCGCCCTACCTGCCAAGGGTCAAAGAAGGCACCTTTATACGATGCCACCTTTTTATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCC                                                                                                                                                                                                                                                                                      >  SRR13385771.760356/1‑301 (MQ=60)
         ATCATTGTGCCGTTGCCGCCCTACCTGCCAAGGGTCAAAGAAGGCACCTTTATACGATGCCACCTTTTTATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGT                                                                                                                                                                                                                                                                                    <  SRR13385771.1906487/301‑1 (MQ=60)
               GTGCCGTTTCCGCCCTACCTGCCAAGTGTCAAAGAAGGCACCTGTATACGATGCCACCTTTTTATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGGCAATGTTGGGATACTTAGTGAATTCCGTTCTTT                                                                                                                                                                                                                                                                               <  SRR13385771.1074601/300‑1 (MQ=60)
                               GCCTGCCAAGTGTCAAGGAAGGCACCTTTAGACGATGCCACCTTTTTATAGTATTCTACTACAGATGCATCGTTCACCAGTTACGGTTCATTCTACTAAATTAGTATGGCGGTTTGCATGTAAGGAAGCAGGAAGTACAAGATCAGTAGAACAAAAAGTTCTACTGTTTGGAATTTAGTTGAACAGGTGACGAAAGCTCTGCTACTAAGACAGTGGCAAAAAATAACAATATTTAAGCATAAGTAATGGGTCAATGTTTGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTC                                                                                                                                                                                                                                                               <  SRR13385771.647533/300‑1 (MQ=60)
                                       AGGGTCAAAGAAGGCACCTTTATACGATGCCACCTTTTTATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGCAGCATGAATTACAAGATCAGTAGAACAAAACGTTCAACTGTTTGGAATTTAGTTGAAAATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAACAAATAACCATATGTAAGCATCAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGACGCGGATTTTCCTATTCGTT                                                                                                                                                                                                                                                      >  SRR13385771.324994/1‑301 (MQ=60)
                                       AGGGTCAAAGAAGGCACCTTTATACGATGCCACCTTTTTATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTT                                                                                                                                                                                                                                                      <  SRR13385771.377714/301‑1 (MQ=60)
                                             AAAGAAGGCACCTTTATACGATGCCACCTTTTTATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATG                                                                                                                                                                                                                                                <  SRR13385771.1021258/301‑1 (MQ=60)
                                              AAGAAGGCACCTTTATACGATGCCACCTTTGTATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTGTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGT                                                                                                                                                                                                                                               <  SRR13385771.220001/301‑1 (MQ=60)
                                                       CCTTTATACGATGCCACCTTTTTATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTC                                                                                                                                                                                                                                       >  SRR13385771.1333357/1‑300 (MQ=60)
                                                                                 GTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCC                                                                                                                                                                                                            >  SRR13385771.548147/1‑301 (MQ=60)
                                                                                        ACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTT                                                                                                                                                                                                       <  SRR13385771.1053138/299‑1 (MQ=60)
                                                                                           ACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTAT                                                                                                                                                                                                    <  SRR13385771.371078/299‑1 (MQ=60)
                                                                                               AGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGTGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCA                                                                                                                                                                                              <  SRR13385771.950000/301‑1 (MQ=60)
                                                                                                                                 AATTAGGATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATTAGATCTGATGACTGTTTCCCAATCACCTTACA                                                                                                                                                            <  SRR13385771.166621/301‑1 (MQ=60)
                                                                                                                                                  GCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGT                                                                                                                                            >  SRR13385771.1172047/1‑300 (MQ=60)
                                                                                                                                                   CATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTAC                                                                                                                                          >  SRR13385771.1495649/1‑301 (MQ=60)
                                                                                                                                                                 TGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGA                                                                                                                               >  SRR13385771.1743603/1‑298 (MQ=60)
                                                                                                                                                                      TACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCAT                                                                                                                                                        <  SRR13385771.1482181/268‑1 (MQ=60)
                                                                                                                                                                                                       TGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTGTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCA                                                                                       <  SRR13385771.279848/300‑1 (MQ=60)
                                                                                                                                                                                                              TAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCAATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCAACATGTA                                                                                <  SRR13385771.1151280/300‑1 (MQ=60)
                                                                                                                                                                                                                          TGACGAACGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCAACATGTACAAAGAGTTGGA                                                                    >  SRR13385771.417025/1‑300 (MQ=60)
                                                                                                                                                                                                                                       GCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCAACATGTACAAAGTGTTGGAACGGTAAAGACCAG                                                      <  SRR13385771.253995/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                             ATAAGAAATGGGTCGATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTGTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCAACATGTACAAAGTGTTGGAACGGTAAAGACCAGTGCAAATCTGATAAAACTTTAAAATAACATGGACAAAT                <  SRR13385771.1479285/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                           AATGTTGGGATACTTAGTGACTTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTGCCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTGTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCAACATGTACAAAGTGTTGGAACGGTAAAGACCAGTGCAAATCTGATAAAACTTTAAAATAACATGGACAAATTTATGTCCAGGATT  <  SRR13385771.1908234/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                             
AAATAAAATATCATTGTGCCGTTGCCGCCCTACCTGCCAAGGGTCAAAGAAGGCACCTTTATACGATGCCACCTTTTTATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTGGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCAACATGTACAAAGTGTTGGAACGGTAAAGACCAGTGCAAATCTGATAAAACTTTAAAATAACATGGACAAATTTATGTCCAGGATT  >  BK006938/358979‑359562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑