Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAATAAAATATCATTGTGCCGTTGCCGCCCTACCTGCCAAGGGTCAAAGAAGGCACCTTTATACGATGCCACCTTTTTATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTGGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCAACATGTACAAAGTGTTGGAACGGTAAAGACCAGTGCAAATCTGATAAAACTTTAAAATAACATGGACAAATTTATGTCCAGGATTCTCCGA  >  BK006938/358979‑359568
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                   
AAATAAAATATCATTGTGCCGTTGCCGCCCTACCTGCCAAGGGTCAAAGAAGGCACCTTTATACGATGCCACCTTTTTATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAG                                                                                                                                                                                                                                                                                                    <  SRR13385772.532982/300‑1 (MQ=60)
                         CGCCCTACCTGCCAAGGGTCAAAGAAGGCACCTTTATACGATGCCACCTTTTTATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGA                                                                                                                                                                                                                                                                          <  SRR13385772.55655/301‑1 (MQ=60)
                                             AAAGAAGGCACCTTTATACGATGCCACCTTTTTATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATG                                                                                                                                                                                                                                                      <  SRR13385772.260191/301‑1 (MQ=60)
                                                                             TATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAA                                                                                                                                                                                                                                                                               <  SRR13385772.345874/244‑1 (MQ=60)
                                                                                   ATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACA                                                                                                                                                                                                                <  SRR13385772.1004307/301‑1 (MQ=60)
                                                                                   ATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATATTCAC                                                                                                                                                                                                                 >  SRR13385772.290038/1‑300 (MQ=60)
                                                                                   AGTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATGCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATGTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTT                                                                                                                                                                                                                                                           <  SRR13385772.838950/258‑1 (MQ=60)
                                                                                           ACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATT                                                                                                                                                                                                         <  SRR13385772.99152/300‑1 (MQ=60)
                                                                                                     CGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACCAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATA                                                                                                                                                                                                  >  SRR13385772.570594/1‑297 (MQ=60)
                                                                                                       TTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCT                                                                                                                                                                                            >  SRR13385772.289910/1‑301 (MQ=60)
                                                                                                                TACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTG                                                                                                                                                                                    <  SRR13385772.1138224/300‑1 (MQ=60)
                                                                                                                  CTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTT                                                                                                                                                                                 >  SRR13385772.70842/1‑301 (MQ=60)
                                                                                                                        ATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAAT                                                                                                                                                                           >  SRR13385772.944036/1‑301 (MQ=60)
                                                                                                                                     AGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCA                                                                                                                                                               <  SRR13385772.1015233/300‑1 (MQ=60)
                                                                                                                                        ATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATAT                                                                                                                                                            <  SRR13385772.1270710/300‑1 (MQ=60)
                                                                                                                                             GTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTAT                                                                                                                                                                                                                                                         >  SRR13385772.301230/1‑202 (MQ=60)
                                                                                                                                                                      TACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATA                                                                                                                               <  SRR13385772.1073915/299‑1 (MQ=60)
                                                                                                                                                                         AAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGTATTTTCTTAATCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGT                                                                                                                          <  SRR13385772.569223/301‑1 (MQ=60)
                                                                                                                                                                               AGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATCAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGG                                                                                                                    >  SRR13385772.935704/1‑301 (MQ=60)
                                                                                                                                                                                         AAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTCTTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTT                                                                                                          >  SRR13385772.371288/1‑301 (MQ=60)
                                                                                                                                                                                         AAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTT                                                                                                          <  SRR13385772.147261/301‑1 (MQ=60)
                                                                                                                                                                                                             TTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCAACATGT                                                                                       <  SRR13385772.318727/300‑1 (MQ=60)
                                                                                                                                                                                                                            ACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATATTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCAACATGTACAAAGTGTTGGAACG                                                                       >  SRR13385772.715920/1‑301 (MQ=60)
                                                                                                                                                                                                                                                             ATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCA                                                                                                                                                                         <  SRR13385772.1264353/170‑1 (MQ=60)
                                                                                                                                                                                                                                                               AACAATATGTAAGCATAAGAAATGGGTCAATGTTGTGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCAACATGTACAAAGTGTTGGAACGGTAAAGACCAGTGCAAATCTGATAAAACTTTAAA                                     <  SRR13385772.1174577/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                         AAGCATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCAACATGTACAAAGTGTTGGAACGGTAAAGACCAGTGCAAATCTGATAAAACTTTAAAATAACATGGAC                          <  SRR13385772.327793/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                             ATAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATTACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCAACATGTACAAAGTGTTGGAACGGTAAAGACCAGTGCAAATCTGATAAAACTTTAAACTAAC                                >  SRR13385772.654037/1‑291 (MQ=60)
                                                                                                                                                                                                                                                                              TAAGAAATGGGTCAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCAACATGTACAAAGTGTTGGAACGGTAAAGACCAGTGCAAATCTGATAAAACTTTAAAATAACATGGACAAATT                     >  SRR13385772.713168/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                          CAATGTTGGGATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCAACATGTACAAAGTGTTGGAACGGTAAAGACCAGTGCAAATCTGATAAAACTTTAAAATAACATGGACAAATTTATGTCCAGGAT         >  SRR13385772.273161/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                   GATACTTAGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTCTTCTTATTATCAACATGTACAAAGTGTTGGAACGGTAAAGACCAGTGCAAATCTGATAAAACTTTAAAATAACATGGACACATTTATGTCCAGGATTCTCCGA  >  SRR13385772.247186/1‑299 (MQ=60)
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                   
AAATAAAATATCATTGTGCCGTTGCCGCCCTACCTGCCAAGGGTCAAAGAAGGCACCTTTATACGATGCCACCTTTTTATAGTATTCTACTACAGAGTCATCGTTCACCAGTTACTGTTCATTCTACTAAATTAGTATGGCGTGTTGCATAGAAGGAAGCATGAATTACAAGATCAGTAGAACAAAAAGTTCAACTGTTTGGAATTTAGTTGAACATGTGACGAAAGCTCTGCTACTAAGACAGGGGCAAAAAATAACAATATGTAAGCATAAGAAATGGGTCAATGTTGGGATACTTGGTGAATTCCGTTCTTTTTAGAAGCGGATTTTCTTATTCGTTTATATGTTGCCATTCATTACCCTATCATATTATGAATCTTCACATTTTATTTTCCATAAGATCTGATGACTGTTTCCCAATCACCTTACATCATATATGATAATGTACAATTGATATGAAGAATAGCAGTCGATGGATGATATTTTATTCTTATTATCAACATGTACAAAGTGTTGGAACGGTAAAGACCAGTGCAAATCTGATAAAACTTTAAAATAACATGGACAAATTTATGTCCAGGATTCTCCGA  >  BK006938/358979‑359568

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑