Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTGATTTTACCGTTCCAGTAACCTTCAGTGGCCTTCTTTAATTCTCTGTTTGGACCGATTCTTGGGAACCCTAAGACAGCAGATTGAACCATTTTTGATATGTACTTTGAAATTATATTGGTATTTTGTTTCTTAGAGTGTTGTCAATGCTCTTAGATGCTTGCTTTTTTATGATAAAGGAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCTTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGAC  >  BK006939/342076‑342643
                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                                        
GTGATTTTACCGTTCCAGTAACCTTCAGTGGCCTTCTTTAATTCTCTGTTTGGACCGATTCTTGGGAACCCTAAGACAGCAGATTGAACCATTTTTGATATGTACTTTGAAATTATATTGGTATTTTGTTTCTTAGAGTGTTGTCAATGCTCTTAGATGCTTGCTTTTTTATGATAAAGGAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCctttttttctttt                                                                                                                                                                                                                                                                              >  SRR13385771.193680/1‑288 (MQ=60)
       TACCGTTCCAGTAACCTTCAGTGGCCTTCTTTACTTCTCTGTTTGGACCGATTCTTGGGAACCCTCAGACAGCAGATTGAACCATTTTTGATATGTACTCTGAAATTATATTGGTATTTTGTTTCTTAGAGTGTTGTCAATGCTCTTAGATGCTTGCTTTTTTATGATCAAGGAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGCTCGAAATATCTATCACTTATATAGAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCctttttttctttcctttttt                                                                                                                                                                                                                                                                       >  SRR13385771.1334838/1‑281 (MQ=60)
                                                            CTTGGGAACCCTAAGACAGCAGATTGAACCATTTTTGATATGTACTTTGAAATTATATTGGTATTTTGTTTCTTAGAGTGTTGTCAATGCTCTTAGATGCTTGCTTTTTTATGATAAAGGAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TTTTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCC                                                                                                                                                                                                                                            >  SRR13385771.1575932/1‑301 (MQ=60)
                                                                       TAAGACAGCAGATTGAACCATTTTTGATATGTACTTTGAAATTATATTGGTATTTTGTTTCTTAGAGTGTTGTCAATGCTCTTAGATGCTTGCTTTTTTATGCTAACGGAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACTAATGATAGTAAAGATGGAAATATCTAACACTTATATAGAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTCTTTCATTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCctttttttctttactttttatatttcgcagttgggaaacctagctagctttccttaacttcattcatatatcgcatttgttcc                                                                                                                                                                                                        >  SRR13385771.1534375/1‑217 (MQ=60)
                                                                                       ACCATTTTTGATATGTACTTTGAAATTATATTGGTATTTTGTTTCTTAGAGTGTTGTCAATGCTCTTAGATGCTTGCTTTTTTATGATAAAGGAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTCTTTCTTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCctttttttctttcttttttttctttagcgtttgggaaacttacatggtttcctttaacttagttctcttatcgcttttgttcccttttccaattccaggt                                                                                                                                                                                       >  SRR13385771.876669/1‑201 (MQ=60)
                                                                                               TGATATGTACTTTGAAATTATATTGGTATTTTGTTTCTTAGAGTGTTGTCAATGCTCTTAGATGCTTGCTTTTTTATGATAAAGGAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TTTTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAAT                                                                                                                                                                                                          <  SRR13385771.1065635/300‑1 (MQ=60)
                                                                                                     GTACTTTGAAATTATATTGGTATTTTGTTTCTTAGAGTGTTGTCAATGCTCTTAGATGCTTGCTTTTTTATGATAAAGGAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TTTTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGAAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCCCAGTTCTCAATTGAGC                                                                                                                                                                                                     >  SRR13385771.1649062/1‑299 (MQ=60)
                                                                                                               ATTATATTGGTATTTTGTTTCTTAGAGTGTTGTCAATGCTCTTAGATGCTTGCTTTTTTATGATAAAGGAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTtct                                                                                                                                                                                                                                                                                                                       <  SRR13385771.189671/161‑4 (MQ=60)
                                                                                                                  ATATTGGTATTTTGTTTCTTAGAGTGTTGTCAATGCTCTTAGATGCTTGCTTTTTTATGATAAAGGAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TTTTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACGAGCTAGCTTCCCTTAAATTAGTG                                                                                                                                                                                                                                                     <  SRR13385771.138340/238‑1 (MQ=60)
                                                                                                                            TTTGTGTCTTAGAGTGTTGTCAATGCTCTTAGATGCTTGCTTTTTTATGATAAAGGAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TTTTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGT                                                                                                                                                                             <  SRR13385771.1067591/300‑1 (MQ=60)
                                                                                                                                                           GTTGCTTGCTTTTTTAAGATAAAGGAAGAGTTTAACAAAAATATTGAATAAGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCAATTTTATAGAA‑ATTTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCTCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGATG                                                                                                                                              <  SRR13385771.113474/300‑1 (MQ=60)
                                                                                                                                                                  GCTTTTTTATGATAAAGGAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TTTTTTTTTTCTTTCCTTTGTTTCTTTCCTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGAC                                                                                                                                       <  SRR13385771.1085879/300‑1 (MQ=60)
                                                                                                                                                                           TGATAAAGGAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TTTTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACT                                                                                                                             >  SRR13385771.1714345/1‑301 (MQ=60)
                                                                                                                                                                               AAAGGAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACCAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TTTTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAG                                                                                                                                                                                                                  <  SRR13385771.455938/212‑1 (MQ=60)
                                                                                                                                                                                   GAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TTTTTTTTTTTTTTCCTTTTTTTCTTTCCTTTTTTTTTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTATTGCATCTATCGCATTTTTTTCATATTCACATTCCCAGTTTTCAATTGAGCAGAACGAGCTATGACTACCCCATTTTTGCGACCGGGAGATAGAGCGAAAAGGGTGCCATGACTGCGCTGACTCTAGCGG                                                                                                                      >  SRR13385771.828974/1‑300 (MQ=60)
                                                                                                                                                                                   GAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TTTTTTTTTTCTTTCCTTTTTTTCTTTACTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAAATAGCTAGCTTCCCCTAAATTAGTGCATCTAACGCATTTGTTCAATATTCACCTTCACAGATCTAAATTAAGAAGAAAGAGCACAGAATACCACAGTTTTGCGAACGGGAGATAGAGCGAAAGCGATGCAATGAATGCGATGACccatgcga                                                                                                                      >  SRR13385771.1720098/1‑292 (MQ=60)
                                                                                                                                                                                                 aaaatattgaattctataaagaggggctgattctagtaaggatgggattctctatcccttatatggtattttttttttctttccgttttttcttgccTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCGGTTGGGAAACCTGGCTGGCTTCCCTTAAGTTCGTGCATCTTTCGCATTGGTTCCATATTCACATTCACAGTTCTCAATTGAGCGGAACGAGCTATGACTACCGCAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCT                                                                                                        <  SRR13385771.1155034/204‑1 (MQ=60)
                                                                                                                                                                                                           TACGTAAAAGAGAAAATAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TTTTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCCGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCAAATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGCACAATATTGGCCCTTTGCACGTTCG                                                                                             >  SRR13385771.720242/1‑301 (MQ=60)
                                                                                                                                                                                                            ACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TTTTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGC                                                                                            <  SRR13385771.1589196/301‑1 (MQ=60)
                                                                                                                                                                                                                  AAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TTTTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTTGGTAAAGTAGCTAGCTTCCTTTAAATTAGTGCTTCTATCGCATTTGTTCCATATTCACTTTCACAGTTCTTAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGGGATAGAGCGAAAGAGCGGCCATGACTGCGATGACGCTAGGTAAAAATATGTGCCCTTTGCACGTTCGCGACTA                                                                                       >  SRR13385771.526707/1‑300 (MQ=60)
                                                                                                                                                                                                                    GAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TTTTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAAC                                                                                    <  SRR13385771.1820671/301‑1 (MQ=60)
                                                                                                                                                                                                                             ATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TTTTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCAAAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGGTAGAGCGACAGAGCTGCCATGACTGCGATGCCTTTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGCCTAAACGAGTTagc                                                                            >  SRR13385771.590045/1‑297 (MQ=60)
                                                                                                                                                                                                                                    TAAAGATGGAAATATCTATCACTTATATAGAA‑TTTTTTTTTTTCTTTCC‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTCTTTCCTTTTTTTCTTTACTTTTTTTTTTTCGCAGTTGGGAAAACTAGCTAGCTTTCCTTAAATTATTGATTTTATCGCATTTGTTCCATATTCACATTCACAGTCTTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTtcgaacgggtgattaggtgaaatgactgcaaagattgcgctggctctggtgaaaaagattggctctttggagggtcgcggcttaaggagttcgatgatagg                                                                     >  SRR13385771.193100/1‑200 (MQ=60)
                                                                                                                                                                                                                                     AAAGATGGAACTATCTATCTCTTATATAGAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTTTTTTTTCCTTTTTTCCCCTTTTTTTTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑C‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTGCCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTC                                                                    <  SRR13385771.366594/300‑1 (MQ=60)
                                                                                                                                                                                                                                       aagatggaaatatctagcacttatatagaagtgtttgtttctttccttttgttctttccTTTTTTTCTTTCCTTTGTGTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCGATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCTAAAAATATTTGCCCTTTGCACTTTCGCGACTATACGAGTTCGATAGTAGTCCC                                                                  <  SRR13385771.484325/242‑1 (MQ=60)
                                                                                                                                                                                                                                               aatatctatcacttatatagaattttttttttctttcctttttttctttccTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCTCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTTTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCCCCGTTTTTCGACCGGGCGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGG                                                          >  SRR13385771.1693324/52‑301 (MQ=60)
                                                                                                                                                                                                                                                     ATCATTTATATAGAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTTTTTTTTCCTTTTTTCCCCTTTTTTTTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑C‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTCCGCAGTTGTGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTGGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTT                                                    <  SRR13385771.1494471/300‑1 (MQ=60)
                                                                                                                                                                                                                                                              tatagaattttttttttctttcctttttttctttccTTTTTTTATTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGTATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCGGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTAC                                            <  SRR13385771.1111390/264‑1 (MQ=60)
                                                                                                                                                                                                                                                                                        ttttctttccTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCCCAGTTTTTCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTCCCGGCCCACATTTTTTAACCTGACTCCG                 >  SRR13385771.157979/11‑301 (MQ=60)
                                                                                                                                                                                                                                                                                               tccTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGCGATAGAGTGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTG           >  SRR13385771.798411/4‑300 (MQ=60)
                                                                                                                                                                                                                                                                                                ccTTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCAAAGTTCTCAATTGAGCAGAACGAGCTATGCCTACCACCGTTTTGCGACCGGGAGATAGAGCGCAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTCTTTTCCCTTTACCGGCCCACATTTTTCCACCTGACTCCGGTCCTGCC         >  SRR13385771.1548771/3‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                    TTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTA      <  SRR13385771.1183752/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                       TTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGATAGCTTCCCTTAAATTAGTGCATCTCTCGCCTTTGTTCCACCTTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTCGCGAAAAATATTGGCCCTTTGTCCGTCCGCGACTCAACGAGTTCGATCGTAGACCCGTGTCTGGTTTTTTACCTCTACCGGCCCACCTTTTTTCACCTGACTCCGGACCTGTCGTACGAC  >  SRR13385771.456990/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                                        
GTGATTTTACCGTTCCAGTAACCTTCAGTGGCCTTCTTTAATTCTCTGTTTGGACCGATTCTTGGGAACCCTAAGACAGCAGATTGAACCATTTTTGATATGTACTTTGAAATTATATTGGTATTTTGTTTCTTAGAGTGTTGTCAATGCTCTTAGATGCTTGCTTTTTTATGATAAAGGAAGAGTTTAACAAAAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAA‑TT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTCTTTCCTTTTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑TTTCGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCTTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGAC  >  BK006939/342076‑342643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑