Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTCTTTCCTTTTTTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑CGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCTTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGACTCTGTTTGTAAGTCACGTGAAATATTTCCTGTGGCTTTTACTAGTAATGTGCACGTGATGTGGCGTGATGGTCCTTTACCCGGAGTGCGGGACCCTGGTTCATGAAAAATTGTGTGAAATCAACTGCATTTTTGGAAGCGAAAAAGATGATGAACCTGAGTTGAATGGCTGTGGGAAAC  >  BK006939/342269‑342822
                                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                          
AAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAATTTTTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTCTTTCCTTTTTTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑CGCAGTTGGGAAACTTAGCTAGCTTCCCTTAACTTTGTTCATCTATCGCCTTTGTTCCATCTTCACATTCACAGTTTTCAATTGAGCAGACCGAGCTATTACGACCACAGTTTTGCGACCGGGGGATTGTGCGAAAGAGCCTCCATGACTGCGATTACTCGAGCGAAAAATATTAGCCCT                                                                                                                                                                                                                                                                                           >  SRR13385772.1130942/1‑301 (MQ=60)
 AATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAATTTTTTTTTGCTTGCCTTTTTTTCTTTCC‑TTTTTTTCTTTCCTTTTTTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑CGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGGGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGATCGAAAGAGCTGCCATGACTGCGATGACCCTAGCGAAAAATTTTGGCCCTTT                                                                                                                                                                                                                                                                                         >  SRR13385772.684889/1‑301 (MQ=60)
                 AAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAATTTTTTTTTTCTTTCCTTTTTTTCTTTCC‑TTTTTTTCTTTCCTTTTTTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑CGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAA                                                                                                                                                                                                                                                                         <  SRR13385772.894539/301‑1 (MQ=60)
                         ggAATGCTAGTAAAGATGGAAATATCTATCACGTATATAGAATTTTTTTTTCGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTCGTTCCTTTTTTTCTTTCCTTGTTTTCGTGCGCATTTGGGAAAACTAGCTATCTGCCCTTAGATTAGGTCATCTATCGCTTTTGTTGCAGATTCACATTCACAGTTCGCAAGTGGGCAGAGCGAGCTATGACTACCACAGTTGTGCGACCGGGAGAGAGAGCGAAAGAGCTGCGATGACTGCGATGACGCTAGCGAAAAATATTGGCCCTTTGCACGTGCGCGACTAAACGAGgtct                                                                                                                                                                                                                                                                <  SRR13385772.1278390/299‑5 (MQ=60)
                                  GTAAAGATGGAAATATCTATCACTTATATAGAATTTTTTTTTTCTTTCCTTTTTTTCTTTCC‑TTTTTTTCTTTCCTTTTTTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑CGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGT                                                                                                                                                                                                                                                        <  SRR13385772.474055/301‑1 (MQ=60)
                                          GGAAATATCTATCACTTATATAGAATTTTTTTTCTTTCCTTTTTTTCTTTCC‑‑‑TTTTTTTCTTTCCTTTTTTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑CGAAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATACAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAAACAGTTCGCTAGTAGTCCCCTTTCTT                                                                                                                                                                                                                                              >  SRR13385772.899144/1‑301 (MQ=60)
                                                     atcacttatatagaattttttttttctttcctttttttctttccTTTTTTTCTTTCCTTTTTTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑CGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTT                                                                                                                                                                                                                                       <  SRR13385772.628337/256‑1 (MQ=60)
                                                                          ttttctttcctttttttctttccTTTTTTTCTTTCCTTTTTTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑CGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGGCCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTT                                                                                                                                                                                                                  <  SRR13385772.576148/277‑1 (MQ=60)
                                                                                        tttctttccTTTTTTTCTTTCCTTTTTTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑CGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCAGTTTCTGGTTTTTTCCCTTTACCGGTCCACATTTTTTCACCTGACTCCGG                                                                                                                                                                                                   >  SRR13385772.31597/10‑301 (MQ=60)
                                                                                                           TCCTTTTTTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑CGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGCAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTagtcgaactcgtt                                                                                                                                                                                                                             >  SRR13385772.272910/1‑243 (MQ=60)
                                                                                                                                        CAGTTTGTAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTGCCAGATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGTAGATAGAGAGAAAGAGCTGCCATGACTGCTATGACTCTAGCGAAAAATATTGGCCCTTTGCACG                                                                                                                                                                                                                                                                                    <  SRR13385772.6238/185‑1 (MQ=60)
                                                                                                                                              GTAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTGCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTGACCGGCCCACATTTTTTCACCTGACTCCGGTCCGGACGTACGACGCTGTTTGTAAGTCACGTGAAATATTT                                                                                                                                                          <  SRR13385772.1215570/301‑1 (MQ=60)
                                                                                                                                                                              ATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGACTCTGTTTGTAAGTAACGTGAAATATTTCCTGTGGCTTTTACTAGTAATGTGCCCGTGAT                                                                                                                          >  SRR13385772.787015/1‑301 (MQ=60)
                                                                                                                                                                                       gtttattgcatattcacaagtacagttcacaagtgggcagaccgagattttactacctaaggTTTGCGACAGGGAGATAGGGCGAAAAGGCTGCTATGACTTCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTTCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGACTCTGTTTGTAAGTCACGTGAAATATTTCCTGTGGCTTTTACTAGTAATGTGCACGTGATGTGGAGTGA                                                                                                                 <  SRR13385772.200719/239‑1 (MQ=60)
                                                                                                                                                                                                  ATTCACCTTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGACTCTGTTTGTAAGTCACGTGAAATATTTCCTGTGGCTTTTACTAGTAATGTGCACGTGATGTGGCGTGATGGTCCTTTA                                                                                                       <  SRR13385772.425287/300‑1 (MQ=60)
                                                                                                                                                                                                                    CAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGACTCTGTTTGTAAGTCACGTGAAATATTTCCTGTGGCTTTTACTAGTAATGTGCACGTGATGTGGCGTGATGGTCCTTTACCCGGAGTGCGGGACCCTG                                                                                    >  SRR13385772.249734/1‑301 (MQ=60)
                                                                                                                                                                                                                     AATTGAGCAGAACGAGCTATGACTACCACAGTTGTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGACTCTGTTTGTAAGTCACGTGAAATATTTCCTGTGGCTTTTACTAGTAATGTGCACGTGATGTGGCGTGATGGTCCTTTACCCGGAGTGCGGGACCCTGG                                                                                   <  SRR13385772.861168/301‑1 (MQ=60)
                                                                                                                                                                                                                           GCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGAGAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGACTCTGTTTGTAAGTCACGTGAAATATTTCCTGTGGCTTTTACTAGTAATGTGCACGTGATGTGGCGTGATGGTCCTTTACCCGGAGTGCGGGACCCTGGTTCATG                                                                             >  SRR13385772.1225746/1‑301 (MQ=60)
                                                                                                                                                                                                                            CAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGACTCTGTTTGTAAGTCACGTGAAATATTTCCTGTGGCTTTTACTAGTAATGTGCACGTGATGTGGCGTGATGGTCCTTTACCCGGCGTGCGGGACCCTGGTTCATG                                                                             >  SRR13385772.779426/1‑300 (MQ=60)
                                                                                                                                                                                                                             AGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGCCTCTGTTTGTAAGTCACGTGAAATATTTCCTGTGGCTTTTACTAGTAATGTGCACGTGATGTGGCGTGATGGTCCTTTACCCGGAGTGCGGGACCCTGGTTCATGA                                                                            >  SRR13385772.594966/1‑300 (MQ=60)
                                                                                                                                                                                                                                ACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGACTCTGTTTGTAAGTCACGTGAAATATTTCCTGTGGCTTTTACTAGTAATGTGCACGTGATGTTGCGTGATGGTCCTTTACCCGGAGTGCGGGACCCTGGTTCATGAAAA                                                                         >  SRR13385772.1134081/1‑300 (MQ=60)
                                                                                                                                                                                                                                 CGATCAATGACTACCACAGTTTTGCGACCGGAAGATAGAGCGAAAGAGCTGCCATAACTGCGATGACTCTGTCGAAAAATATTGGCCGTTTGCAATTTCGCGACTAAACGATTTCGATAGTAGTCCCTTTTCTTTTTTTTTCCCTTTACCGTCCCACATTTTTTCACCTTACTCCGGTCCTGACGTACGACTCTGTTTGTAAGTCACGTTAAATATTTCCTGTTGCTTGTACTAGTAATGTGCACGTGATGTGGCGTGATGGTCCTTTACCCGGAGTGCGGGACCCTGGTTCATGAAAAAT                                                                       <  SRR13385772.985966/301‑1 (MQ=60)
                                                                                                                                                                                                                                  GAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGACTCTGTTTGTAAGTCACGTGAAATATTTCCTGTGGCTTTTACTAGTAATGTGCACGTGATGTGGCGTGATGGTCCTTTACCCGGAGTGCGGGACCCTGGTTCATGAAAAATT                                                                      <  SRR13385772.579264/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                  GATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATACTGGCCCTCTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTACCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGACTCTGCTTGTAAGTCACGTGAAATCTTTCCTGTCGCTTTTACTAGTAATGTGCACGTGCTGTGGCGTGATGGTCCTTTACACGGACTGCGGGACCCTGGTTCATGACAACTTCTGTGAAATCAACTGCATTCTTGGAACCGAA                                       >  SRR13385772.997759/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                              GAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGACTCTGTTTGTAAGTCACGTGAAATATTTCCTGTGGCTTTTACTAGTAATGTGCACGTGATGTGGCGTGATGGTCCTTTACCCGGAGTGCGGGACCCTGGTTCATGAAAAATTGTGTGAAATCAACTGCATTTTTGGAAGCGAAAAAGATAATGAAC                          >  SRR13385772.499027/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                             CGATGACTCTAGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGACTCTGTTTGTAAGTCACGTGAAATATTTCCTGTGGCTTTAACTAGTAATGTGCACGTGATGTGGCGTGATGGTCCTTTACCCGGAGTGCGGGACCCTGGTTCATGAAAAATTGTGTGAAATCAACTGCCTTTCTGGAAGCGAAAAAGATGATGAACCTGAGTTGAATGGCC           >  SRR13385772.307690/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                       AGCGAAAAATATTGGCCCTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGACTCTGTTTGTAAGTCACGTGAAATATTTCCTGTGGCTTTTACTAGTAATGTCCACGTGCTGTGGCGTGATGGTCCTTTACCCGGAGTGCGGGACCCTGGTTCATGAAAAATTGTGTGAAATCAACTGCATTTTTGGAAGCGAAAAAGATGATGAACCTGAGTTGAATGGCTGTGGGAAAC  >  SRR13385772.1256051/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                          
AAATATTGAATACGTAAAAGAGAAACTAATGCTAGTAAAGATGGAAATATCTATCACTTATATAGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTTTCTTTCCTTTTTTTCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑CGCAGTTGGGAAAACTAGCTAGCTTCCCTTAAATTAGTGCATCTATCGCATTTGTTCCATATTCACATTCACAGTTCTCAATTGAGCAGAACGAGCTATGACTACCACAGTTTTGCGACCGGGAGATAGAGCGAAAGAGCTGCCATGACTGCGATGACTCTAGCGAAAAATATTGGCCTTTTGCACGTTCGCGACTAAACGAGTTCGATAGTAGTCCCGTTTCTGGTTTTTTCCCTTTACCGGCCCACATTTTTTCACCTGACTCCGGTCCTGACGTACGACTCTGTTTGTAAGTCACGTGAAATATTTCCTGTGGCTTTTACTAGTAATGTGCACGTGATGTGGCGTGATGGTCCTTTACCCGGAGTGCGGGACCCTGGTTCATGAAAAATTGTGTGAAATCAACTGCATTTTTGGAAGCGAAAAAGATGATGAACCTGAGTTGAATGGCTGTGGGAAAC  >  BK006939/342269‑342822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑