Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCCTTTAAAGTGCAGAAGTCAGAAGCATTGTTACTAACTTTCAACAATTTTTATTCCTTTTCATGATAGATATCAAAGTGAAGACCGCTCGCTGGTATCGAAGTATTTCTTAAAGCCATTTTGGCAAAGATTTTGTCACATATTTCCCACGTGGATGGCGCCCAACATCATCACATTATCAGGATTTGCTTTTATAGTTATCAACGTGTTGACTGTATTCTATTACGATCCAAACCTTAACACAGATACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTCCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGACCCTTAGGAGAACTATTCGATCATAGTATTGATGCCATTAATTCTACTCTGTCTATTTTCATCTTCGCATCCGAAACTGGAATGGGATTTTCGTATAACTTAATGTTATCCCAATTTGCGATGCTGACGAATTTTTACTTAAGTACTTGGGAAGAGTACCATACACACACATTATACTTAAGTGAGTTTTCTGGACCCGTGGAAGGCATCCTGATTGTTTGCGTTTCATTGA  >  BK006934/354887‑355467
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                    
GCCTTTAAAGTGCAGAAGTCAGAAGCATTGTTACTAACTTTCAACAATTTTTATTCCTTTTCATGATAGATATCAAAGTGAAGACCGCTCGCTGGTATCGAAGTATTTCTTAAAGCCATTTTGGCAAAGATTTTGTCACATATTTCCCACGTGGATGGCGCCCAACATCATCACATTATCAGGATTTGCTTTTATAGTTATCAACGTGTTGACTGTATTCTATTACGATCCAAACCTTAACACAGATACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTCCTATATCAAACG                                                                                                                                                                                                                                                                                          <  SRR13385772.351743/301‑1 (MQ=60)
                                       TTCAACAATTTTTAGTCCTTTTCAGTATAGATAGCAAAGTGAAGACCGCTCGCTGGTATCGAAGTATTTCTTAAAGCCATTTTGGCAAAGATTTTTTCACATATTTCCCACGTGGATGGCGCCCAACATCATCACATTAGCAGGATTTGCTTTTATAGTTATCAACGTGTTGACTGTATTCTATTACGATCCAAACCTTAACACAGATACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCA                                                                                                                                                                                                                                                     <  SRR13385772.148938/299‑1 (MQ=60)
                                                                 ATAGATATCAAAGTGAAGACCGCTCGCTGGTATCGAAGTATTTCTTAAAGCCATTTTGGCAAAGATTTTGTCACATATTTCCCACGTGGATGGCGCCCAACATCATCACATTATCAGGATTTGCTTTTATAGTTATCAACGTGTTGACTGTATTCTATTACGATCCAAACCTTAACACAGATACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGACCCTTAGGAGAACTATT                                                                                                                                                                                                                         <  SRR13385772.183171/301‑1 (MQ=60)
                                                                  TAGATATCAAAGTGAAGACCGCTCGCTGGTATCGAAGTATTTCTTAAAGCCATTTTGGCAAAGATTTTGTCACATATTTCCCACGTGGATGGCGCCCAACATCATCACATTATCAGGATTTGCTTTTATAGTTATCAACGTGTTGACTGTATTCTATTACGATCCAAACCTTAACACAGATACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGACCCTTAGGAGAACTATTC                                                                                                                                                                                                                        >  SRR13385772.1067830/1‑301 (MQ=60)
                                                                            AGTGAAGACCGCTCGCTGGTATCGAAGTATTTCTTAAAGCCATTTTGGCAAAGATTTTGTCACATATTTCCCACGTGGATGGCGCCCAACATCATCACATTATCAGGATTTGCTTTTATAGTTATCAACGTGTTGACTGTATTCTATTACGATCCAAACCTTAACACAGATACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGACCCTTAGGAGAACTATTCGATCATAGT                                                                                                                                                                                                               >  SRR13385772.142489/1‑300 (MQ=60)
                                                                                                   GAAGTATTTCTTAAAGCCATTTTGGCAAAGATTTTGTCACATATTTCCCACGTGGATGGCGCCCAACATCATCACATTATCAGGATTTGCTTTTATAGTTATCAACGTGTTGACTGTATTCTATTACGATCCAAACCTTAACACAGATACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGACCCTTAGGAGAACTATTCGATCATAGTATTGATGCCATTAATTCTACTCTG                                                                                                                                                                                       >  SRR13385772.649541/1‑301 (MQ=60)
                                                                                                                               AGATTTTGTCACATATTTCCCACGTGGATGGCGCCCAACATCATCACATTATCAGGATTTGCTTTTATAGTTATCAACGTGTTGACTGTATTCTATTACGATCCAAACCTTAACACAGATACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGACCCTTAGGAGAACTATTCGATCATAGTATTGATGCCATTAATTCTACTCTGTCTATTTTCATCTTCGCATCCGAAACTG                                                                                                                                                           <  SRR13385772.609411/301‑1 (MQ=60)
                                                                                                                                     tggctCATATTTCCCACGTGGATGGCGCCCAACATCATCACATTATCAGGATGTTCTGTTATAGTTATCAACGTGTTGACTGTATTCTATTACGATCCAAACCTTAACACAGATACTCCTCGCTGGACATATTGGTCTTACGCTGTATGTGTAGTTCTATATCAAACTTTCGATGGATGTGATGGTGTACACGCTCTCCGTATCAATCAATCTGGACCCTTAGGAGAACTATTCGATCATAGTAGTGAGGCCATTAATTCTACTCTGTCTAGTTTCAGCTGCGCATCCGAAACTGGAATG                                                                                                                                                      <  SRR13385772.1113184/295‑1 (MQ=60)
                                                                                                                                                               GCCCAACATCATCACATTATCAGGATTTGCTTTTATAGTTATCAACGTGTTGACTGTATTCTATTACGATCCAAACCTTAACACAGATACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGAACCTTAGGAGAACTATTCGATCATAGTATTGATGCCATTCATTCTACTCTGTCTCTTTTCATCTTCGCATCCGAAACTGGAATGGGATTTTCGTATAACTTAATGTTCTCC                                                                                                                           >  SRR13385772.709046/1‑301 (MQ=60)
                                                                                                                                                                     CATCATCACATTATCAGGATTTGCTTTTATAGTTATCAACGTGTTGACTGTATTCTATTACGATCCAAACCTTAACACAGATACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGACCCTTAGGAGAACTATTCGATCATAGTATTGATGCCATTAATTCTACTCTGTCTATTTTCATCTTCGCATCCGAAACTGGAATGGGATTTTCGTATAACTTAATGTTATCCCAATTT                                                                                                                     <  SRR13385772.631763/301‑1 (MQ=60)
                                                                                                                                                                     CATCATCACATTATCAGGATTTGCTTTTATAGTTATAAACGTGTTGACTGTATTCTATTACGATCCAAACCTTAACACAGATACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGCCCCTTAGGAGAACTATTCGATCATAGTATTGATGCCATTAATTCTACTCTGTCTATTTTCATCTTCGCATCCGAAACTGGAATGGGAATTTCGTATAACTTAATGCTATCCCAATTT                                                                                                                     >  SRR13385772.17386/1‑301 (MQ=60)
                                                                                                                                                                              ATTATCAGGATTTGCTTTTATAGTTATCAACGTGTTGACTGTATTCTATTACGATCCAAACCTTAACACAGATACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGACCCTTAGGAGAACTATTCGATCATAGTATTGATGCCATTAATTCTACTCTGTCTATTTTCATCTTCGCATCCGAAACTGGAATGGGATTTTCGTATAACTTAATGTTATCCCAATTTGCGATGCTG                                                                                                            <  SRR13385772.790740/301‑1 (MQ=60)
                                                                                                                                                                                               TTATAGTTATCAACGTGTTGACTGTATTCTATTACGATCCAAACCTTAACACAGATACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGACCCTTAGGAGAACTATTCGATCATAGTATTGATGCCATTAATTCTACTCTGTCTATTTTCATCTTCGCATCCGAAACTGGAATGGGATTTTCGTATAACTTAATGTTATCCCAATTTGCGATGCTGACTAATTTTTACTTA                                                                                             >  SRR13385772.1166065/1‑299 (MQ=60)
                                                                                                                                                                                                                                 CGATCCAAACCTTAACACAGATACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGACCCTTAGGAGAACTATTCGATCATAGTATTGATGCCATTAATTCTACTCTGTCTATTTTCATCTTCGCATCCGAAACTGGAATGGGATTTTCGTATAACTTAATGTTATCCCAATTTGCGATGCTGACGAATTTTTACTTAAGTACTTGGGAAGAGTACCATACACAACCATTATAC                                                         >  SRR13385772.1093566/1‑301 (MQ=60)
                                                                                                                                                                                                                                                      TACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGACCCTTAGGAGAACTATTCGATCATAGTATTGATGCCATTAATTCTACTCTGTCTATTTTCATCTTCGCA                                                                                                                                                                     <  SRR13385772.15172/172‑1 (MQ=60)
                                                                                                                                                                                                                                                                            TCTTACGCTTTAGGTGTATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGACCCTTAGGAGAACTATTCGATCATAGTATTGATGCCATTAATTCTACTCTGTCTATTTTCATCTTCGCATCCGAAACTGGAATGGGATTTTCGTATAACTTAATGTTATCCCAATTTGCGATGCTGACGAATTTTTACTTAAGTACTTGGGAAGAGTACCATACACACACATTATACTTAAGTGAGTTTTCTGGACCCGTGGAAGGCATCCTGATTGTTT              >  SRR13385772.661078/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                ACGCTTTAGGTGTATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGACCCTTAGGAGAACTATTCGATCATAGTATTGATGCCATTAATTCTACTCTGTCTATTTTCATCTTCGCATCCGAAACTGGAATGGGATTTTCGTATAACTTAATGTTATCCCAATTTGCGATGCTGACGAATTT                                                                                                    >  SRR13385772.518267/1‑211 (MQ=60)
                                                                                                                                                                                                                                                                                       AGGTGAATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGACCCTTAGGAGAACTATTCGATCATAGTATTGATGCCATTAATTCTACTCTGTCTATTTTCATCTTCGCATCCGAAACTGGAATGGGATTTTCGTATAACTTAATGTTATCCCAATTTGCGATGCTGACGAATTTTTACTTAAGTACTTGGGAAGAGTACCATACACACACATTATACTTAAGTGAGTTTTCTGGACCCGTGGAAGGCATCCTGATTGTTTGCGTTTCATT    <  SRR13385772.33746/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                        GGTGTATTTCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGACCCTTAGGAGAACTATTCGATCATAGTATTGATGCCATTAATTCTACTCTGTCTATTTTCATCTTCGCATCCGAAACTGGAATGGGATTTTCGTATAACTTAATGTTATCCCAATTTGCGATGCTGACGAATTTTTACTTAAGTACTTGGGAAGAGTACCATACACACACATTATACTTAAGTGAGTTTTCTGGACCCGTGGAAGGCATCCTGATTGTTCGCGTTTCATTGT  >  SRR13385772.256098/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                    
GCCTTTAAAGTGCAGAAGTCAGAAGCATTGTTACTAACTTTCAACAATTTTTATTCCTTTTCATGATAGATATCAAAGTGAAGACCGCTCGCTGGTATCGAAGTATTTCTTAAAGCCATTTTGGCAAAGATTTTGTCACATATTTCCCACGTGGATGGCGCCCAACATCATCACATTATCAGGATTTGCTTTTATAGTTATCAACGTGTTGACTGTATTCTATTACGATCCAAACCTTAACACAGATACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTCCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAATCAGGACCCTTAGGAGAACTATTCGATCATAGTATTGATGCCATTAATTCTACTCTGTCTATTTTCATCTTCGCATCCGAAACTGGAATGGGATTTTCGTATAACTTAATGTTATCCCAATTTGCGATGCTGACGAATTTTTACTTAAGTACTTGGGAAGAGTACCATACACACACATTATACTTAAGTGAGTTTTCTGGACCCGTGGAAGGCATCCTGATTGTTTGCGTTTCATTGA  >  BK006934/354887‑355467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑